LOC103038926


Basic Information

Item Value
gene id LOC103038926
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 51455657 ~ 51460083 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007258975.3
TCTTGCGGTTAAGGCGACATGCTGTATAATGGGGTGACGGCACGTAGGAGGGATTATTCATAGCGACACTACCTGCCTTGTTCTGCTCTGGATTTTCACCACTGCTTTCTGCAATAACAATGAACGGTGAATATGATTATGAAAGTGAGCCAACACAAGCCTGGACATCACCACCAGACTATTTGTCTAATGAGACAGAAGACTATGAGGCGGGTTTCTGTCAAAAGAGATGGGTCAGGGACTTCCGTGGCTCCTACGAACCCCTCCTCTATTGGTCCATCTTCGTGGTAGGAGGTGTGGGCAACCTGCTTGTCGTGTGGATCTACACCACCGTCAAACACCGCCTCAAGACCATGACCGACGTCTACTTGCTCAACCTGGCCATCGCTGACCTCTGCTTCCTGGGTACCCTGCCTTTCTGGGCCACAGACGCCACCCAGGGCTGGGTGTTCGGCTCTGTCGTCTGCAAGGTAGTCTCTGCCGTCTACAAGATTAACTTCTTTGCCAGCATGCTCCTGCTCACCTGCATTAGCGTGGACCGCTACATCGCCATCGTCCGCGTGACCCAGGCCCAGAACTTCAAGAGCAGGCGGATGTTCTACAGTAAGCTGGCCTGTATGGTTGTGTGGTTGCTCTCTTGCCTCTTGTCTCTGCCTGAGTTTCTGTTTGCTGAGGTTAGGCAAAGTTCAAGCGGTGATTCTTGCAGCCTGGTCTATACCGCCAACAACAATAACCTCACCAAAGTCCTGGTCCTGTGCCTGCAGATCTCTATAGGCTTCTGTCTTCCTCTGCTGGTCATGGTGGCCTGCTACTCGGTGATCATCCGCACTCTGATGCAAGCTCGCAGCTTCGAGAAGCACAAAGCTCTTAGGGTCATCTTTGCCGTGGTGGCGGCATTCGTGATCTCCCAGCTGCCATACAACAGTCATCTGGTCGTAGAAGCGGCGCAGGCTTACAACACAACCATGACAGATTGCAAGACCGTTATAGCCTTTGACATTGCGGGTCAGATCGTGAAGAGTTTGGCCTATACGCACTGCTGTCTGAACCCTATCCTGTACGCTTTCATCGGGGTGCGCTTCCGGAAGGATCTGTTGCACCTCTGCCAGTGCTTGACCAGGATGGGTGGCATCAACAAGCTTCCAGCGGTTCCCAAGAGACCTTCTGTCATGTCTGATACGGACACCACCCCTGCACTGTCTTTGTAACCTTCTAGTGTTAACCAATGACGTACTAAGCAGTTTCCAGTTCATATACTCTCTTCAGAGGCTGGACAGTCACCAATAACCGTTCACACAACATACGCCTTATAACTCCATCCACATATACAGCATATATTCATTCTGCTCTCTTTTCACACATTACAGAAACAGAACTTCTGATATAGGACAATCTCTCAGCAGCAACCGCAGCATGTTATCTCAGACATCATATCCAAATAAGCAACTTTCTTCTGCAAAAGTAGGCTAGAATAAGCTTTAAAGACACTTCCTGAATATTTGAGGTATTGAGAAATGCTTGTATAGTAGTTTTcatcataacaaaaaaaaaaagtatgtctaATATATCTCATAACAGTTATGTGTCAATTCAATGAGATTATTTCACATCAAACTGGATAAAACAAGTAGTTAGtctcaaaatataaaatataaaaaatataaatggatTGACTTGATGACATCTACAATTGTTCCGGGTTTAAAGAttgtatatttatgtaaatatgtgtaaagaaaaagttgtgtttttttttattaattctttttGTTTGATTTACACCTATtctcaaataaaatacaatgaaaaaca

Function

GO:

id name namespace
GO:0030098 lymphocyte differentiation biological_process
GO:0042110 T cell activation biological_process
GO:0030217 T cell differentiation biological_process
GO:0046649 lymphocyte activation biological_process
GO:0045321 leukocyte activation biological_process

KEGG:

id description
ko04060 Cytokine-cytokine receptor interaction
ko04660 T cell receptor signaling pathway
ko04658 Th1 and Th2 cell differentiation
ko05340 Primary immunodeficiency

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007258975.3 True 1812 mRNA 0.45 3 51455657 51460083

Neighbor

gene id symbol gene type direction distance location
gli3 gli3,LOC102779559,LOC108444237,LOC107675308 coding downstream 34265 51245789 ~ 51421392 (-)
pnrc1 NA coding downstream 277306 51174484 ~ 51178351 (-)
pm20d2 pm20d2 coding downstream 281267 51149463 ~ 51174390 (-)
ankrd6 ankrd6 coding downstream 600342 50779334 ~ 50855315 (-)
map3k5 map3k5,LOC107653159,LOC107660504 coding downstream 752539 50582347 ~ 50703118 (-)
LOC103045300 NA coding upstream 5201 51465284 ~ 51481876 (-)
lztfl1 lztfl1,LOC107701792 coding upstream 24685 51484768 ~ 51495272 (-)
LOC103029105 NA coding upstream 804965 52265048 ~ 52272380 (-)
cgrrf1 NA coding upstream 914433 52374516 ~ 52382949 (-)
LOC103031417 gjd2b,LOC103031417,LOC108414321,LOC107582173,LOC107740303,LOC105892965 coding upstream 978374 52438457 ~ 52445807 (-)
G27523 NA non-coding downstream 270415 51184728 ~ 51185242 (-)
G27504 NA non-coding downstream 411450 51039630 ~ 51044207 (-)
G27502 LOC108427479,LOC103380695 non-coding downstream 424356 51029156 ~ 51031301 (-)
G27461 NA non-coding downstream 483001 50954618 ~ 50972656 (-)
G27454 NA non-coding downstream 569761 50885531 ~ 50885896 (-)
G27619 NA non-coding upstream 300841 51760924 ~ 51761490 (-)
G27621 NA non-coding upstream 325979 51786062 ~ 51789157 (-)
G27623 NA non-coding upstream 382851 51842934 ~ 51844943 (-)
G27626 NA non-coding upstream 439464 51899547 ~ 51900123 (-)
G27628 NA non-coding upstream 446004 51906087 ~ 51906467 (-)
pcmt1 pcmt1 other downstream 715223 50725063 ~ 50740434 (-)
LOC103034285 NA other downstream 915985 50522899 ~ 50539672 (-)
G27400 NA other downstream 924018 50481889 ~ 50531639 (-)
G27258 NA other downstream 1816213 49638759 ~ 49639444 (-)
G27145 NA other downstream 2564629 48886994 ~ 48891028 (-)
LOC103040973 NA other upstream 833797 52293880 ~ 52321920 (-)
G27821 LOC108413844,LOC108411774,LOC108411773,LOC108417426,LOC108417958 other upstream 1326389 52786472 ~ 52849906 (-)
trnal-cag NA other upstream 2161988 53622071 ~ 53622358 (-)
akap7 NA other upstream 2282797 53742880 ~ 53907412 (-)
LOC103040805 NA other upstream 2589712 54049795 ~ 54055697 (-)

Expression


Co-expression Network