myoc (myoc)


Basic Information

Item Value
gene id myoc
gene name myoc
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 65931323 ~ 65941098 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007259469.2
CCTTTTCAGACTGTATAAATAACTCCTGCCTGGGGTCCCCAGGCTCAGAGAAACAGCCTCCAGACCTGACAACACTGGGATCCCAAAGAACTATCAATCACCCCAAAACCCAGACTCTGCGCAGACCTGACACCGACCTGTGCACACTCAACTGGGAAAAGCAAGGACAGGGGgaagcagtgagagagataaaagagactAAGTAGAGGCTACGCTTCACTGGCACCAAGGCAGTGCTTCATCAGTCTGTCTCTCATTTCACTCAGGAGGGAAAGAGGAAGGAACAGATTAGTGACGGTGCTGCAGAGGGCAGAAGATCAGAAGGAAGACACAGTAAAGAAGTGAGGTGAGAAATCAGAAAAGGGAGCATCCGTgaggaaaggaaaagagaaaaacagcttCTCTGTGCCGCAGACTTCTATGATCTACTTGAAAATGTGGTCCCTGGCTGTAGTTTGGATCTCCAGCCTGCTTGTAAGTGCCCAGGCTCAGGGCACTGCCAGCCTCTGGAAAGGGAATGACCGCAGCGGCCGCTGCCAGTACAGCTTTACCGTGGACAGCCCAAAAGAAGCCAGCTGTCCCTCAGCAAGCACTGGACCTGAGATGGAAGCCCTGAAAGCACGTCTGGGACTGCTAGAGGTGCTGGTAGCCCGCCTGGCAGGAGGAGAGGCACCAGGAACTGTGGCTGGTGCAGGACTTCAGGAAGCCCACAGTCAGGCCATGAGGGACAAGGCTCAGCTACAGCGGGAGAAGACCCAGTTGCAGCGGGAGAAGGACCGGCTGGCCCAGCAAGTGGAGGACCTCCAAAAGAGAGTGGCAGAGCTTCAGAAGGAGGCAGAGAGGTTGAGGAGCAGACCCTGCCCACAGGCGCCTCCTCCCAGTGTGCCACAGCATGACAGTGGTCTCCGGCCTGGAGCTGgcccttctctctctcatctggCGTCCAGACCAGGCAGGACACAAGGAGACACAAGCAGCCTTAGAGACTCCTCTTGGCACTATGGAGGTCCAGCATACCAGGAGCTAAAGGCTGAAGTGGCTGAGGTTCCTGCCCCAAGCCCAGAGAACCCTGAGGATAATACAGGCTGTGGTGAGCTGCTGTCTGTGGGAGAGCCGGTGTCTCATCGTAAGGCAGACAGCATTGCCGGTAAGTACGGTGTGTGGATGCAGGACCCAGAGCCTGAGGCACCATACGGGCCAGGAATGCTGTGGCGCGTCGACACAGTAGGCTCAGAGGTGCGACAGCTCTTCGGCTATGAAGACATGCAGCAGCTGTCTCGTGGCTTCCCCACCAAGGTTCTGCTTCTGCCCGAGGCCATGGAGAGCACAGGGGCCGCCATGTACCGCGGCTCTCTCTACTACCAGCGCCGTCGCAGCCGCACCCTCATACGCTACGACCTGGCCTCGGAGAGCGTGGCTGCCCGCAGAGATCTGCCCCACGCCGGCTTCCACGGCCAGTTCCCCTACTCCTGGGGCGGCTACACGGACATCGACTTCGCCGTGGACGAGGAGGGGCTGTGGGTCATCTACAGCACCAACAAGGCCAAGGGCGCCATCGTGCTCTCCCAGTTGGACCCACACAGTCTCGAAGTTTTGAGGAGCTGGGAGACCAACATCCGCAAGACCACAGTGGCCAACGCCTTCATGATCTGCGGGAGGCTTTACACCGTGGCCAGCTACACCTCTCCCAACACCACAGTCAACTACAGCTTCGACACGAGCACCAGCCAGAGCAAAGCCATGACCGTGCCGTTCAAGAACCGCTACCGCTACAACAGCATGGTCGACTACAACCTGGTCCAAAGAAAGCTCTTCGCCTGGGATAACTACCACATTGTGTCGTACGACGTGCGGCTTGGCAAGCAACAGTAAAGCGCTACACAGTAGAGGTGGTTGCAGAACCATCATTATTATAAGAGGGGTTAACAGGTTGGAGACTGCACAAACATGTCTTGCTGGCATTGGGATTGTTCATAATACTACACTTCTACGCAATCATGGATGTAAAAATTCTATAGCTTTAATAAAGGTTTTTCTTAAATCAAACACACATAAATGCCAGCAAGGTCAAATAATTGTTTTCCTAATACATCATGAAGTTAAAAAGCCAAGTTGAATAAACTTCAGGGAAACCCCAGGCTCACCTCACTCTATTTGTAATGCAAATCAGGCTTTGAAAAGCAGACGCCCCAATCCAGATTTGGTGTCTTCTATTGCCAAGCCAAAAATGCACCCGCTGAAATATACAGATAACCAGTCATATAAAGCTGCTCTGGTCTTCCAAAACCTGTTACGTTGTTTGCTATTAAATGTTCAATAatgcagtttgtgtttgtgGTAAAAGCGCTCATCATGCAGTGCCACTCCCAAAAGCCATTTGGTTTAACTgggattttgtgtgtgtgttttttttttcttccaaagaGATTATTTTTCTACCTTTGCTTGTATGCCACATCTTGTGCATTCTGTGTACAGCACTGACACGAAGGCAAGAACAGCCAGTTTATTAACATTAAACTATAGTACACTTTTCCAGATAACTCACAGCTTTGAAAACATTTCTGATCTGCGAACACAGCATGGTACTGAGTTAATAGTATTCATTAAGTTATATTTCAAGTTTAAATTcataaacacagaataaagatttcttttttatatcaaa
>XM_007259470.2
CCTTTTCAGACTGTATAAATAACTCCTGCCTGGGGTCCCCAGGCTCAGAGAAACAGCCTCCAGACCTGACAACACTGGGATCCCAAAGAACTATCAATCACCCCAAAACCCAGACTCTGCGCAGACCTGACACCGACCTGTGCACACTCAACTGGGAAAAGCAAGGACAGGGGgaagcagtgagagagataaaagagactAAGTAGAGGCTACGCTTCACTGGCACCAAGGCAGTGCTTCATCAGTCTGTCTCTCATTTCACTCAGGAGGGAAAGAGGAAGGAACAGATTAGTGACGGTGCTGCAGAGGGCAGAAGATCAGAAGGAAGACACAGTAAAGAAGTGAGGTGAGAAATCAGAAAAGGGAGCATCCGTgaggaaaggaaaagagaaaaacagcttCTCTGTGCCGCAGACTTCTATGATCTACTTGAAAATGTGGTCCCTGGCTGTAGTTTGGATCTCCAGCCTGCTTGTAAGTGCCCAGGCTCAGGGCACTGCCAGCCTCTGGAAAGGGAATGACCGCAGCGGCCGCTGCCAGTACAGCTTTACCGTGGACAGCCCAAAAGAAGCCAGCTGTCCCTCAGCAAGCACTGGACCTGAGATGGAAGCCCTGAAAGCACGTCTGGGACTGCTAGAGGTGCTGGTAGCCCGCCTGGCAGGAGGAGAGGCACCAGGAACTGTGGCTGGTGCAGGACTTCAGGAAGCCCACAGTCAGGCCATGAGGGACAAGGCTCAGCTACAGCGGGAGAAGACCCAGTTGCAGCGGGAGAAGGACCGGCTGGCCCAGCAAGTGGAGGACCTCCAAAAGAGAGTGGCAGAGCTTCAGAAGGAGGCAGAGAGGTTGAGGAGCAGACCCTGCCCACAGGCGCCTCCTCCCAGTGTGCCACAGCATGACAGTGGTCTCCGGCCTGGAGCTGACTCCTCTTGGCACTATGGAGGTCCAGCATACCAGGAGCTAAAGGCTGAAGTGGCTGAGGTTCCTGCCCCAAGCCCAGAGAACCCTGAGGATAATACAGGCTGTGGTGAGCTGCTGTCTGTGGGAGAGCCGGTGTCTCATCGTAAGGCAGACAGCATTGCCGGTAAGTACGGTGTGTGGATGCAGGACCCAGAGCCTGAGGCACCATACGGGCCAGGAATGCTGTGGCGCGTCGACACAGTAGGCTCAGAGGTGCGACAGCTCTTCGGCTATGAAGACATGCAGCAGCTGTCTCGTGGCTTCCCCACCAAGGTTCTGCTTCTGCCCGAGGCCATGGAGAGCACAGGGGCCGCCATGTACCGCGGCTCTCTCTACTACCAGCGCCGTCGCAGCCGCACCCTCATACGCTACGACCTGGCCTCGGAGAGCGTGGCTGCCCGCAGAGATCTGCCCCACGCCGGCTTCCACGGCCAGTTCCCCTACTCCTGGGGCGGCTACACGGACATCGACTTCGCCGTGGACGAGGAGGGGCTGTGGGTCATCTACAGCACCAACAAGGCCAAGGGCGCCATCGTGCTCTCCCAGTTGGACCCACACAGTCTCGAAGTTTTGAGGAGCTGGGAGACCAACATCCGCAAGACCACAGTGGCCAACGCCTTCATGATCTGCGGGAGGCTTTACACCGTGGCCAGCTACACCTCTCCCAACACCACAGTCAACTACAGCTTCGACACGAGCACCAGCCAGAGCAAAGCCATGACCGTGCCGTTCAAGAACCGCTACCGCTACAACAGCATGGTCGACTACAACCTGGTCCAAAGAAAGCTCTTCGCCTGGGATAACTACCACATTGTGTCGTACGACGTGCGGCTTGGCAAGCAACAGTAAAGCGCTACACAGTAGAGGTGGTTGCAGAACCATCATTATTATAAGAGGGGTTAACAGGTTGGAGACTGCACAAACATGTCTTGCTGGCATTGGGATTGTTCATAATACTACACTTCTACGCAATCATGGATGTAAAAATTCTATAGCTTTAATAAAGGTTTTTCTTAAATCAAACACACATAAATGCCAGCAAGGTCAAATAATTGTTTTCCTAATACATCATGAAGTTAAAAAGCCAAGTTGAATAAACTTCAGGGAAACCCCAGGCTCACCTCACTCTATTTGTAATGCAAATCAGGCTTTGAAAAGCAGACGCCCCAATCCAGATTTGGTGTCTTCTATTGCCAAGCCAAAAATGCACCCGCTGAAATATACAGATAACCAGTCATATAAAGCTGCTCTGGTCTTCCAAAACCTGTTACGTTGTTTGCTATTAAATGTTCAATAatgcagtttgtgtttgtgGTAAAAGCGCTCATCATGCAGTGCCACTCCCAAAAGCCATTTGGTTTAACTgggattttgtgtgtgtgttttttttttcttccaaagaGATTATTTTTCTACCTTTGCTTGTATGCCACATCTTGTGCATTCTGTGTACAGCACTGACACGAAGGCAAGAACAGCCAGTTTATTAACATTAAACTATAGTACACTTTTCCAGATAACTCACAGCTTTGAAAACATTTCTGATCTGCGAACACAGCATGGTACTGAGTTAATAGTATTCATTAAGTTATATTTCAAGTTTAAATTcataaacacagaataaagatttcttttttatatcaaa

Function

symbol description
myoc Predicted to act upstream of or within positive regulation of cell migration; regulation of cell-matrix adhesion; and regulation of stress fiber assembly. Predicted to be located in several cellular components, including extracellular space; mitochondrial outer membrane; and rough endoplasmic reticulum. Is expressed in caudal fin skeleton; eye; and postcranial axial skeleton. Human ortholog(s) of this gene implicated in juvenile glaucoma; low tension glaucoma; ocular hypertension; open-angle glaucoma; and primary open angle glaucoma. Orthologous to human MYOC (myocilin).

NR:

description
myocilin-like

GO: NA

KEGG:

id description
K23027 MYOC; myocilin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007259469.2 True 2668 mRNA 0.51 4 65931323 65941098
XM_007259470.2 False 2602 mRNA 0.51 3 65931323 65941098

Neighbor

gene id symbol gene type direction distance location
LOC103026271 prdx6,LOC107712864 coding downstream 84143 65838880 ~ 65847180 (-)
jun jun coding downstream 322549 65606592 ~ 65608774 (-)
LOC103027150 LOC108415562 coding downstream 329784 65598312 ~ 65601539 (-)
LOC103027761 NA coding downstream 333864 65592679 ~ 65597459 (-)
LOC103027441 NA coding downstream 344754 65582983 ~ 65586569 (-)
vamp4 vamp4 coding upstream 6536 65947634 ~ 65965285 (-)
itpa itpa coding upstream 45427 65986525 ~ 65989450 (-)
nt5e nt5e,LOC107562347,LOC107660511,LOC107680304,LOC107554926 coding upstream 450539 66391637 ~ 66430046 (-)
mei4 NA coding upstream 606892 66547990 ~ 66674798 (-)
senp6 senp6 coding upstream 1112567 67053665 ~ 67079442 (-)
G31073 prrc2c,LOC107697494 non-coding downstream 6626 65924231 ~ 65924697 (-)
G31070 NA non-coding downstream 7956 65918392 ~ 65923367 (-)
G31053 NA non-coding downstream 45156 65885468 ~ 65886167 (-)
G31054 NA non-coding downstream 47710 65883267 ~ 65883613 (-)
G31052 NA non-coding downstream 50616 65878096 ~ 65880707 (-)
G31102 NA non-coding upstream 63795 66004893 ~ 66005868 (-)
G31108 NA non-coding upstream 83117 66024215 ~ 66069347 (-)
G31109 NA non-coding upstream 84952 66026050 ~ 66038372 (-)
G31118 NA non-coding upstream 132235 66073333 ~ 66076356 (-)
G31120 NA non-coding upstream 138846 66079944 ~ 66080258 (-)
trnad-guc_8 NA other downstream 833650 65097602 ~ 65097673 (-)
trnad-guc_7 NA other downstream 838174 65093078 ~ 65093149 (-)
LOC103036530 cyp2p7,cyp2j20,LOC108415355 other downstream 1132147 64774684 ~ 64799176 (-)
scfd2 scfd2 other downstream 2167650 63528281 ~ 63763673 (-)
usp46 usp46 other downstream 2446302 63433792 ~ 63485021 (-)
LOC103031958 myo6 other upstream 921367 66862465 ~ 67044318 (-)
G31424 NA other upstream 1482774 67423872 ~ 67432424 (-)
G31437 NA other upstream 1562651 67503749 ~ 67528337 (-)
arpc5 arpc5,arpc5b,LOC103045524,LOC107599090,LOC107698380,LOC107732423,LOC104921830 other upstream 1914508 67855606 ~ 67885433 (-)
LOC103046133 LOC108439589 other upstream 1991462 67932560 ~ 67940713 (-)

Expression


Co-expression Network