LOC103026271 (prdx6,LOC107712864)


Basic Information

Item Value
gene id LOC103026271
gene name prdx6,LOC107712864
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 65838880 ~ 65847180 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007259474.2
CACTGCACAGCGCTGGACTTGACCCCTGAGGCTCTAGAGTGTGATTGGGTAACTCAGCCTCTCCCATTCTCTTCATACTGAGtctgtgagggagtgtgtgagctgtagcacgctgctgctgctgctgagaggGACAGAAGCGCAGTCATGCCGGGGGTCCTGTTAGGAGACGTATTTCCTAATTTTGAGGCGAACACAACCGCCGGCAAGATCAAATTTCACGAATTCTTGGGGAACTCATGGGGCATCTTGTTTTCTCACCCCCGCGACTTCACCCCCGTGTGCACAACTGAGCTGGCCTGTGCTGCTAAGATCAGCGATGAGTTCAAGAAGCGTGATGTGAAGATGATCGCCCTGTCCATAGACAGCGTGGAGGACCATCTCGGCTGGAGCAAGGATGTGATGGCTCTTCATCCAGAGCAGGCAGCCTCTCCCCTGCCATTCCCCATTATAGCGGATGACAAGCGTGAGCTGTCAGTTCTGCTCGGGATGCTGGACCCTGATGAGCAGGACAAAGATGGTTTGCCCCTCACTGCTCGCTGTgttTTTGTTGTTGGACCTGATAAGAAGCTGAAGCTCTCCATCCTCTACCCTGCCACTACAGGGCGCAATTTCACTGAGATACTTCGAGTCATTGATTCTCTGCAGCTGACTGCAAAGAAGAAGGTTGCCACACCTGTGGATTGGAAGCCTGGAGATGATGTCATGGTTGTCCCTTCTCTTTCTGACGAAGAAGCTAAGAAGCTTTTCCCTGCTGGTTTCACCACCAAGGATATGCCATCTGGGAAAAAATACCTGCGCTACACCCCAAACCCTTAAACCGCTGCTAGGGGCCTGACAAATAGCACTTCCTTTCCACTCTTGGCCTGttgattttgtaattttattttgtataatttatcCACAATTATTTTTCTGCCTTTTACCAAAAATGTAATCATGAACAGATAGACAGAGCCAGACCTCAATCCTGAGACAAAGTGTACTATTACACACTGTGTTGCATAGTGccttatctttaataaaaacagcagggAATGTGTTGAACATGCATGTTAAACAAAATGGCTAATACAGTTCAAGTTAAATATGTTTGCACAACACTGGTATGTACTAGAGAATGAATGGGCCCATGTAGAAGTTTACTTTTATACTGCTTGAAATGTGAGAGAAGAAATAAGAGTTTATTTTGAACAGTAGTGTCAGATTGGGCAGACATGTCTTTAGGCTCCTGTTGTCTggctaaactgaaaaaaaaaaccctggatTGGGAAATACTCCCTAGATCACATGTGAGTTATGCAACAAGAGCATTGCGTTACCATAATACCATCTAGTGACCTAGATGAACCTTGATTCTGTTTATTAGAGTTCACTGGATGTTAATGTATCCCCTAACCCTGTTTATACTGTCCTTAAAAACTAGATTTCCACACCTTTTATTTCACAtcattatttgattttttttgtatgctgAGTTAGGATTACATCCGACTTTCCAAATCCAAATGAGTTAAATGTATTATACATATTTGTTGCAATTTATTTAGATCTATTGAAATTTTCTTGTTTGCACTAAAGTTGACACTCTGAAAATGTAAACTTTCTCATTATAGGAAATTTTCACACCAATTATGTAAAATGAGAATAGTAGCCTGTCGTTCCCTGGAAAAGCCAGCAGATGGCAGCAGAGGCTTGGTAATAGAAAAAACACTCTCTGCTGTGATCCTGAAACTCTATTCAGTAATGATCAACTTGAAGTAAAGACTTTGTGTCAGCAGTTTAAACTGGCAAATCTATAA

Function

symbol description
prdx6 Predicted to enable peroxidase activity and peroxiredoxin activity. Predicted to be involved in cell redox homeostasis. Predicted to be active in cytosol and mitochondrion. Is expressed in alar plate midbrain region; digestive system; immature eye; nervous system; and otic vesicle. Orthologous to human PRDX6 (peroxiredoxin 6).

NR:

description
peroxiredoxin-6

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0016209 antioxidant activity molecular_function
GO:0051920 peroxiredoxin activity molecular_function

KEGG:

id description
K11188 PRDX6; peroxiredoxin 6

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007259474.2 True 1802 mRNA 0.43 5 65838880 65847180

Neighbor

gene id symbol gene type direction distance location
jun jun coding downstream 230106 65606592 ~ 65608774 (-)
LOC103027150 LOC108415562 coding downstream 237341 65598312 ~ 65601539 (-)
LOC103027761 NA coding downstream 241421 65592679 ~ 65597459 (-)
LOC103027441 NA coding downstream 252311 65582983 ~ 65586569 (-)
LOC103029766 angptl1,LOC107658173,LOC107739855,LOC107669140,LOC107712858 coding downstream 420399 65370370 ~ 65418481 (-)
myoc myoc coding upstream 84143 65931323 ~ 65941098 (-)
vamp4 vamp4 coding upstream 100454 65947634 ~ 65965285 (-)
itpa itpa coding upstream 139345 65986525 ~ 65989450 (-)
nt5e nt5e,LOC107562347,LOC107660511,LOC107680304,LOC107554926 coding upstream 544457 66391637 ~ 66430046 (-)
mei4 NA coding upstream 700810 66547990 ~ 66674798 (-)
G31029 NA non-coding downstream 3657 65833578 ~ 65835223 (-)
G31021 NA non-coding downstream 110177 65728479 ~ 65728703 (-)
G30990 NA non-coding downstream 157277 65677510 ~ 65681603 (-)
G30980 NA non-coding downstream 246826 65591823 ~ 65592054 (-)
G30942 fam20b,LOC107597857,LOC107712860,LOC107658171,LOC107669149 non-coding downstream 364215 65473137 ~ 65474665 (-)
G31049 NA non-coding upstream 23884 65871064 ~ 65872082 (-)
G31051 NA non-coding upstream 28007 65875187 ~ 65875426 (-)
G31052 NA non-coding upstream 30916 65878096 ~ 65880707 (-)
G31054 NA non-coding upstream 36087 65883267 ~ 65883613 (-)
G31053 NA non-coding upstream 38288 65885468 ~ 65886167 (-)
trnad-guc_8 NA other downstream 741207 65097602 ~ 65097673 (-)
trnad-guc_7 NA other downstream 745731 65093078 ~ 65093149 (-)
LOC103036530 cyp2p7,cyp2j20,LOC108415355 other downstream 1039704 64774684 ~ 64799176 (-)
scfd2 scfd2 other downstream 2075207 63528281 ~ 63763673 (-)
usp46 usp46 other downstream 2353859 63433792 ~ 63485021 (-)
LOC103031958 myo6 other upstream 1015285 66862465 ~ 67044318 (-)
G31424 NA other upstream 1576692 67423872 ~ 67432424 (-)
G31437 NA other upstream 1656569 67503749 ~ 67528337 (-)
arpc5 arpc5,arpc5b,LOC103045524,LOC107599090,LOC107698380,LOC107732423,LOC104921830 other upstream 2008426 67855606 ~ 67885433 (-)
LOC103046133 LOC108439589 other upstream 2085380 67932560 ~ 67940713 (-)

Expression


Co-expression Network