jun (jun)


Basic Information

Item Value
gene id jun
gene name jun
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 65606592 ~ 65608774 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007259476.3
GGAGAGCGCGGCGGAGGAGCTCACAGCACACACGGGACAGGGAGAGGGAGgtacggagagagagagagagagaaagagcggaGAGGagtttaaaacagagaaacaacacacacagtagTCCCGTGAACAGACTGACAGCGCGAGAGAGGCGCAAGACCTCGTAGTTCCGACTGTTTTTACaacttttttcaaactttttccTCTCGCGGGAcaacgagagacagagagagagaggacgagGCTCGAGAAGTTTGGGAAGCGGCTGCTAGCTCCTGCCCTTCTCCTCTTCTATTCTGAGAGACAACACTTCATTCACCAAGAGAGGCGAGCGCTTCTGAGTCGGACTTCCAGCTGAACTCCtcacacagtgagagagagctgTGGTGAAGATCTCTACCGCTCGCTGGTGAGTGAAACGGCTCCTCCACTCTCAGACAAAGTTTTGGTTTCTCCTTCTATGTCGACCAAGATGGAAACTACTTTCTACGACGACTCGCTGAGCGCAGCCTTTTCGCAGCACGACGCCGCCGCTTTCGGATACAACGCCAAGGTGCTGAAGCACAGCATGACGCTCAACCTCACCGACCCGGCCGGCACGCTCAAGCCGCACCTGCGGGCCAAGGCCAGCGACCTCCTCACGTCGCCGGACGTGGGCTTGCTTAAGCTGGCCTCTCCGGAGCTCGAGCGGCTCATCATCCAGTCCAGCAACGGGCTCATCACCACCACGCCCACGCCCACCCAGTTCCTGTGCCCCAAGAATGTCACGGACGAGCAGGAGGGCTTCGCGGAGGGCTTCGTGCGGGCCCTGGCCGAGCTGCACCACCAGCACATGCCCGGGACCTCGGCGCCCCCTCAGACCAGCACCACGGTCAACAGCTCCATGGCGGCGGCCCCGGCCGCGGCAGCCTACAGCTCGGCCCCGCCGCGCGCCGACCCGCCGGTCTACGCGGACCTGAGCACCTTTAACCCTGCCATCAGCAGCAGCGCGGCCCCGGGCTTCCCTGCCGTCAGCTACACCACCACGGCGCCTCAGCCCCTGGCGCCTCCACCACAACAGCAACAGGCGCCACAGCCGCTCCCCGTCCAGCACCCGCGGCTACAGGCACTCAAGGAGGAGCCGCAGACGGTGCCCGAGATGCCCGGGGAGACCCCGCCGCTGTCGCCCATCGACATGGAGAGCCAGGAGCGCATCAAGGCCGAGCGCAAGCGCATGCGTAACCGCATCGCCGCGTCCAAGTgccgcaagaggaagctggagcGCATCTCACGCCTGGAGGACAAGGTGAAGACGCTCAAGTCTCAGAACTCCGAGCTCGCGTCTACGGCCAACATGCTGCGCGAGCAGGTGGCCCAGCTCAAGCAGAAAGTCATGAACCACGTGAACAGCGGCTGCCAGCTGATGTTGACGCAGCAGCTGCAGACCTTCTGAAGCGGGAGCTCCAAGGAGCTGCGGAGAGGGCGCCGAGGAAAGAAGGGACAAACGGGCTGAAAGGACACGCTTGTGTAAAAGGGGCTGTGCACCAGAGCCTGCGGCGACGGGGGGCCGGTGAAGCCGTAAAGTGCTCCAGGACTCTCCCGGGGACCCTGTCTGGCCGCGTGCCGTGCAAAAGGACGTCCAGATGTGGAGCTTACCAGACCTCCACCAAGCTGGGTCCACAGCACCAGACAGCATGAAAGACTCACACTGTtacttttattactgttgttttctAATGACGAAAGAAAGAGACTCAACCTTGTTCACTTTGACCAAGTCGTGCATGGACCGAAGCGTACAGGCGCACTCAGTATTAGAAAAAGAGAACTGCATTAGGGACTCTGCTCGGCCCATGTTGGCGGGCCACAGCAGGAAGTTGCGTCctataaagttaaaaaaagaccCTTTGATAAGAGCTGCCTGACTTCTGAGTTGCAAAATGTCATTTTTGTTCTTCTTCAGATGAATCAAATCGACGTTATTTGAGATAGTCAAGCTTTCGACTTTTCTTTCGAAGtttctttttctaaaaagtTTCTTAATGAGGTTTCACTCATTGTTATTTGTAAATAAGATCAACAGGGAGTACTTAAGTTTACCATTTGTAATAAAAAGTGCTAcgtaatttttttatgtttgttttctgaGCTGATCAGAAACTAATCAATATTTATGAACTGTAATAAAGGATGTCAAACGAAAACAA

Function

symbol description
jun Enables DNA-binding transcription factor activity, RNA polymerase II-specific. Contributes to DNA-binding transcription factor activity and beta-catenin binding activity. Involved in regulation of transcription by RNA polymerase II. Acts upstream of or within several processes, including hematopoietic progenitor cell differentiation; response to cadmium ion; and response to methylmercury. Part of transcription regulator complex. Is expressed in several structures, including digestive system; hematopoietic system; mesoderm; musculature system; and sensory system. Human ortholog(s) of this gene implicated in pulmonary tuberculosis. Orthologous to human JUN (Jun proto-oncogene, AP-1 transcription factor subunit).

NR:

description
transcription factor AP-1

GO:

id name namespace
GO:0060070 canonical Wnt signaling pathway biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0046686 response to cadmium ion biological_process
GO:0051597 response to methylmercury biological_process
GO:0005634 nucleus cellular_component
GO:0005667 transcription regulator complex cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0008013 beta-catenin binding molecular_function

KEGG:

id description
K04448 JUN; transcription factor AP-1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007259476.3 True 2183 mRNA 0.56 1 65606592 65608774

Neighbor

gene id symbol gene type direction distance location
LOC103027150 LOC108415562 coding downstream 5053 65598312 ~ 65601539 (-)
LOC103027761 NA coding downstream 9133 65592679 ~ 65597459 (-)
LOC103027441 NA coding downstream 20023 65582983 ~ 65586569 (-)
LOC103029766 angptl1,LOC107658173,LOC107739855,LOC107669140,LOC107712858 coding downstream 188111 65370370 ~ 65418481 (-)
zyg11b zyg11b,zyg11,LOC107712854,LOC107669142,LOC107721807,LOC107658153 coding downstream 360903 65225005 ~ 65245689 (-)
LOC103026271 prdx6,LOC107712864 coding upstream 230106 65838880 ~ 65847180 (-)
myoc myoc coding upstream 322549 65931323 ~ 65941098 (-)
vamp4 vamp4 coding upstream 338860 65947634 ~ 65965285 (-)
itpa itpa coding upstream 377751 65986525 ~ 65989450 (-)
nt5e nt5e,LOC107562347,LOC107660511,LOC107680304,LOC107554926 coding upstream 782863 66391637 ~ 66430046 (-)
G30980 NA non-coding downstream 14538 65591823 ~ 65592054 (-)
G30942 fam20b,LOC107597857,LOC107712860,LOC107658171,LOC107669149 non-coding downstream 131927 65473137 ~ 65474665 (-)
G30919 NA non-coding downstream 152332 65281419 ~ 65454260 (-)
G30900 NA non-coding downstream 447308 65154118 ~ 65159284 (-)
G30869 NA non-coding downstream 583640 65022352 ~ 65022952 (-)
G30990 NA non-coding upstream 68736 65677510 ~ 65681603 (-)
G31021 NA non-coding upstream 119705 65728479 ~ 65728703 (-)
G31029 NA non-coding upstream 224804 65833578 ~ 65835223 (-)
G31049 NA non-coding upstream 262290 65871064 ~ 65872082 (-)
G31051 NA non-coding upstream 266413 65875187 ~ 65875426 (-)
trnad-guc_8 NA other downstream 508919 65097602 ~ 65097673 (-)
trnad-guc_7 NA other downstream 513443 65093078 ~ 65093149 (-)
LOC103036530 cyp2p7,cyp2j20,LOC108415355 other downstream 807416 64774684 ~ 64799176 (-)
scfd2 scfd2 other downstream 1842919 63528281 ~ 63763673 (-)
usp46 usp46 other downstream 2121571 63433792 ~ 63485021 (-)
LOC103031958 myo6 other upstream 1253691 66862465 ~ 67044318 (-)
G31424 NA other upstream 1815098 67423872 ~ 67432424 (-)
G31437 NA other upstream 1894975 67503749 ~ 67528337 (-)
arpc5 arpc5,arpc5b,LOC103045524,LOC107599090,LOC107698380,LOC107732423,LOC104921830 other upstream 2246832 67855606 ~ 67885433 (-)
LOC103046133 LOC108439589 other upstream 2323786 67932560 ~ 67940713 (-)

Expression


Co-expression Network