LOC103027150 (LOC108415562)


Basic Information

Item Value
gene id LOC103027150
gene name LOC108415562
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 65598312 ~ 65601539 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007259477.2
GATATTTGAATGCTTGGCAATAAATAAGACAGAAGCCATTTTATGCAGCTACTTACTACTATGTTCAGAGCTCTCTGCACATCTTCAGgtggtactgtatttaaatttcGGGTCTTATCATTTATGAACAGTGAGGAGCATGGGATCAACCAAGTTCACAAATCCTTATGCTCTTGAAGTGATCCGGACAAAGGAGAAAGAGCTAGTTGGTGGCATCTCCAACACTGAAGACTTATTGGATCTTCTCGTTGCTAATGGAGTCCTTCTACCTGAGAGCAGGGTTCTGGTGTCCAGTATCGCAGCACGAGACGAGAAGAACTCCAGAATGCTCAGCATTCTGGTCTCGCGAGGAGAACGAGCATGCCGGATCTTCTTTTACCCCTGCCTGAAGAGTGCCGAACCTGACCTGTATCAGAGCGTGAAGACATATGTAAGTGGACTAAATCAAAACATTAAGGACACACGAAGGCAGCTGATCGGGTATCTTCTAGAGAAAGATTGTAAGgggagtaaaataaaaaagaaaataaacacagaccATTCTAATGAGACTTTAAATCATGAATCAAAAAGGGCTGAGGAACCTGTCTCTTCAGAAGGATTAGAGAAGAACTCTACTAAACTCACCTCAAAAGATATTCTGAAAGCAGTGTCTACTGGTGACCTATCCCTGCTACAGGCACTTCTAAAAGAAACAGTTATCAGTGACAGAAACTCATCAAGTGATACTCTCCTACACATTGCTGCAGATCATGGTCAAGTGGCGGTTATAAATTTTTTGCTCCGTAAGGGAGCAAAACTGGATATGAGGGACCACCAAGGTCGCACTGCCCTACATAGGGCTGCAGAGGCTGGCCACATGGCTGCCTCCATGGCTCTTGTTAGGGCTGGAGCAGATATCCACGCCAAGGACCAGGCCTCCAAAACGCCCCAACATTTAGCTGCACAAAATGGTCATATAAATACTGTCAAATCACTGATAGCGGAGGAAGCAAAAAGCTGCAAAAATCAGACTACATTCCTGCACATGGCTGCAATGGAAGATGACCCGGTACTGGCCGACATTTTGCTGAAGAACGGCGCATCAGCAGACGCTCAAGACAGCCAAAGGAAGACACCCTTGTTTTATGCCATAAGCTGCGGGCACGAGAAAACAGCTGCTGTGCTGCTTCAGGCTGGTGCACAGGTTAATTCTGCAATCATCGAGGCAGCGTTTGACTTAAATAGGGAGTCTGTGCTGTCTCTGCTTTTGAGAAACATCAAGAACAGAATGTCTCAAAATGAGCTAAAGACTATTCTGTTTAAAGCAGTAAAGAGAAATTTGGATGGGGTTGTGGCTGCCCTCATTGAAATCGGAATAGATGTAAATGTGCGCGATGAACTGGGCTACACACCACTGCTTCTGGCCACAGAGCTGAGGAATGTGGAAGTGTTCAAAATGCTGGTCTCTAAAAAAGCCCACTTGGATAAGAAGCTACCTAACCAGACGTCTGCTCTTCATTTGGCTATCCAGAGTGGGAGTATGCAGATAACACAGATATTACTGGACAAGGGTATGGACCCCAACATAACCGGCCCCAAAGACCAGACACCTCTGCATCTTAGTGCCCTGTACAACCAGCCTACTCTGATGGCTCTGCTGCTCCGCAAAGGAGCTCAAGTCGACGCTGTCACTGATGGCCTGACTGCTCTTCATCTTGCCAGCCAGTGTGGGCACACAGAGGCAGTGGCCCAGCTGTTGGAGGGAAAAGCTGACGTGCACGCTTGGGACCGACAGAGCAGGACAGCCCTACACTGTGCAGCTGCTCAAGGTGAGGCAGGTGTCATAAAACTACTCCTCTATGCCGGAGCCGATGCCAACGCTGctgagaaggagaagaagactCCATTACACCTAGCAGCAACAGCAGGGCACGCTGAGGCCACCTCCACCCTGCTGGCTGGGAAGGCTAATGGTGCAGCTAAAGATATGGATGGCTGTTCGGCCCTGCATTACGCTGCTGGTAATGGGCATGAAAGTGTAGCTGCCACTCTCCTCACCTCTGGGAAGAATAAAAACGTGGATGATAGAAACGTGTGGAGGAGGACTCCTCTACATTTGGCAGCAGAGCACGGGCAAGACATCCTGGTGGATTTGCTACTGGAAAAACAAGCCAAGATCAATGCCATGGACAACAATAAAGACACGCCACTGCATTCTGCATGTCGTGGAGGGCACGTAGACACAGTGCAGAGATTAGTAAACTGGACTCAGGGGCAGAGAGCAAACCTGCATGCCACTAACAACGTGAAGAAAACAGCCCTACAGGTGGCAGAATCTGAGGACTCTCCTAACCACCAGAGCATTGCTACACTACTGAAgaagaaaatgtttattatcaaataatacatatacagtgACTCTGTAACCAGTGTATATCTAAAGCCAATGAGTTTGATAAaagacacatctttttaataaggttgatttttttaaatatttagtttaaaatgtgttgttttttttacgctTGACATTGACAACACCAATGATTAGCCTTATGATGAATATGTGTACATGTATGTTAAAGCAAAAGGACAGCTTTCTGCACCTACAATAAAAGCACTAACATGA

Function

NR:

description
PREDICTED: ankyrin-2-like

GO:

id name namespace
GO:0042981 regulation of apoptotic process biological_process
GO:0005622 intracellular anatomical structure cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007259477.2 True 2614 mRNA 0.46 2 65598312 65601539

Neighbor

gene id symbol gene type direction distance location
LOC103027761 NA coding downstream 853 65592679 ~ 65597459 (-)
LOC103027441 NA coding downstream 11743 65582983 ~ 65586569 (-)
LOC103029766 angptl1,LOC107658173,LOC107739855,LOC107669140,LOC107712858 coding downstream 179831 65370370 ~ 65418481 (-)
zyg11b zyg11b,zyg11,LOC107712854,LOC107669142,LOC107721807,LOC107658153 coding downstream 352623 65225005 ~ 65245689 (-)
trnad-guc_3 NA coding downstream 525499 65072742 ~ 65072813 (-)
jun jun coding upstream 5053 65606592 ~ 65608774 (-)
LOC103026271 prdx6,LOC107712864 coding upstream 237341 65838880 ~ 65847180 (-)
myoc myoc coding upstream 329784 65931323 ~ 65941098 (-)
vamp4 vamp4 coding upstream 346095 65947634 ~ 65965285 (-)
itpa itpa coding upstream 384986 65986525 ~ 65989450 (-)
G30980 NA non-coding downstream 6258 65591823 ~ 65592054 (-)
G30942 fam20b,LOC107597857,LOC107712860,LOC107658171,LOC107669149 non-coding downstream 123647 65473137 ~ 65474665 (-)
G30919 NA non-coding downstream 144052 65281419 ~ 65454260 (-)
G30900 NA non-coding downstream 439028 65154118 ~ 65159284 (-)
G30869 NA non-coding downstream 575360 65022352 ~ 65022952 (-)
G30990 NA non-coding upstream 75971 65677510 ~ 65681603 (-)
G31021 NA non-coding upstream 126940 65728479 ~ 65728703 (-)
G31029 NA non-coding upstream 232039 65833578 ~ 65835223 (-)
G31049 NA non-coding upstream 269525 65871064 ~ 65872082 (-)
G31051 NA non-coding upstream 273648 65875187 ~ 65875426 (-)
trnad-guc_8 NA other downstream 500639 65097602 ~ 65097673 (-)
trnad-guc_7 NA other downstream 505163 65093078 ~ 65093149 (-)
LOC103036530 cyp2p7,cyp2j20,LOC108415355 other downstream 799136 64774684 ~ 64799176 (-)
scfd2 scfd2 other downstream 1834639 63528281 ~ 63763673 (-)
usp46 usp46 other downstream 2113291 63433792 ~ 63485021 (-)
LOC103031958 myo6 other upstream 1260926 66862465 ~ 67044318 (-)
G31424 NA other upstream 1822333 67423872 ~ 67432424 (-)
G31437 NA other upstream 1902210 67503749 ~ 67528337 (-)
arpc5 arpc5,arpc5b,LOC103045524,LOC107599090,LOC107698380,LOC107732423,LOC104921830 other upstream 2254067 67855606 ~ 67885433 (-)
LOC103046133 LOC108439589 other upstream 2331021 67932560 ~ 67940713 (-)

Expression


Co-expression Network