zyg11b (zyg11b,zyg11,LOC107712854,LOC107669142,LOC107721807,LOC107658153)


Basic Information

Item Value
gene id zyg11b
gene name zyg11b,zyg11,LOC107712854,LOC107669142,LOC107721807,LOC107658153
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 65225005 ~ 65245689 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007259482.3
CCCCGCCTCCCTCCGCTGAGATGTGGTTCCCGTGTGTCGACCTTGTTTACTTGCTGAGGCGCAGCTGCAGATTCACACCGAGAGAAATAACGCTCAGAATGCGCTCTATCGCTTCACCATGACCCGACACACACCGGCCGCGGAGGCTGAAGCTCCTGCAGGAGGTGTTTCGGGCGGCAGAGGACGCGGTGGTGCTTCGTGCGGATCAGATATGCTGTTTCTTTACCAACAAGTCGTGCTGAGCCGTCTGACTGCTGGCTGAGCGGCTAGTCCGCTAACCGGGGCCGCCTGCGCTGCGCTCGGGTAGACAGATAGCTCTAGCGCTAATTCTGGACTGCCCGTCCCCCCAGTGTGGATCCTAAACGCTCTCTAGCTAACCTACATACTCACCACTCATAAACATGGACGAGGCATCCCCAGCGTCTCTGACTGACCTGTGCCTGTCGCTGGTGAGCTCCAGGCTGGAGTTGTTCTGTAAGAAGTTTGATGACGGCTTGCTGTGCCTGCGCGAGCCTCTGATCTTCCCTCAGGAGCTCGCTGATCAACTGCTCTGCAAGATGGCCACAGAGGGCTTGCTGAATGACAGCACAGTGGGCATATTCTGCAGTTGCCAGCAGCTCCGGCTGCGGCGTGCCTGCATCCGCACTGCCCGCATCTCAGCCGAAGCCTTCCAGCGTGCCCTCTGCCCTCATCGGCTGCTTGAGCTGGATGCCTCGCGGGTCAATGCTGACCTCACCATCACTGACATCCTGCTTGGCCTCTCTGCCAACAAGGGCGTGTGTGAGAGTCTGCAGCGCCTGGTCTTGAACGGTCTTACGATGTCGTCTTTGGAGGAGCCCAGCCgccgctgcttcagctccctGCAGGGCCTGCGAGCGCTCAGCATCTCCAACGTGGACTTTTATGATTCAGGCCTGGCTGATGTGTGCTCGCTGCCTCGCCTGGAGAGTCTGGATATCTCCAACACCTCAGTGACCAACCTCACACCACTGTTGGGGCTCAGGTCTAGGCTCCGCTACCTCACCATGCATCAGCTCAAACGGCTAGAGATGACCACCGCACAGCTCTTGGCAGTGCTTAGTCAGCTGGAGGGCTTGCAGCATTTAGACATCTCAGATGACAAGCAGTTCACATCAGATGTTGCACGCCAGCTGCTGGAAACGTCAGGCATCCTCCCAGCACTGGTGTCGCTGGACATTTCAGGGCGGAAGCAGGTGACTGATGCGGTGGTCAGGGCTTTCGTGGAGGAGAGGCCAGGCATGACCTTTGTTGGTCTGTTGGCTACCGACGCAGGCTTCTCTGATTTCCTGTCTGGAGAGGGCAGCTTAAAGGTGACCGGGGAGGCCAACGAGACTCAAATTTGCGAGGCTTTGCGGCGctacagtgagagagagggtttTGTTAGAGAGGCCCTCTTCCATCTCTTCAGTCTCACACACGTGATGGAGAAAGCTCGGCCTGACATCCtcaaaCTGGTGGCTCTGGGAATGAAAAACCACCCCACCACTCTGAACGTGCAATTGGCAGCCAGTGCCTGTGTCTTCAACCTCACCAAACAAGACCTGGCTTTTGGAATGCCTGTTCGTCTTCTAGGCAATGTCACCCAGCTGCTGCTAGAGGCCATGAAGACTTTCCCTAATCACCAACAGTTGCAGAAGAActgcctgctctctctctgcagtgacCGTATCCTGCAGGAGGTACCCTTCAACAGGTTTGATGCTGCCAAGCTGGTCATGCAGTGGTTATGTAACCATGAAGATCAGAACATGCAGAGGATGGCAGTGGCCATCATATCCATCCTGGCTGCCAAGCTGTCTACTGAACAAACAGCACAGTTAGGAGCGGAGCTGTTTATTGTTAAGCAACTCCTGCACATTGTGCGTCAGAAGACATCTCAGGGCACGGTAGACGCTACTTTGAAGTTCACACTCAGTGCCCTGTGGAACCTGACAGACGAGTCACCAACCACCTGTAGACACTTCATAGAGAACCAGGGCCTGGAGCTTTTCATCAAAGTCCTGGAGTCCTTCCCTTCAGAGTCTTCCATCCAGCAAAAGGTCCTTGGTTTACTGAATAACATAGCTGAGGTGGGAGAGCTGCATGCAGAGTTAATGGTGCAGGGCTTTCTGGACCATATCCGAACTCTGCTGCACAGTCCTGAAGTGGAGGTCAGCTACTTTGCTGCAGGAATACTTGCCCACCTCACATCACGTGGGGAAACAGTGTGGACCCTCAATCTGCCCCTCAGAGccgcactgctggagcagctgCACTCAGCGATTCTGAAATGGCCCACGCCGGAATGTGAGATGGTGGCATACAGGTCGTTTAACCCTTTCTTCCCCCTGCTGGAGTGTTTCCAGACCCCAGGGGTTCAGTTGTGGGCAGCCTGGGCTATGCAGCATGTGTGCAGCAAGAACGctgcacGGTACTGCAGCATGCTGCTTGAGGAAGGAGGCCTGCAGCACCTGGAGGCAGTGAGGTCACATCCTGACACACACAGTGATGTGAGACGATTGGCTGAGAGCATTCTGGACAGTCTTCATCGCCATCAAGTACGAACAGGCTACATAGGCACAACGcaagcacacacaaacagagAGCGAGATGTCACATGATGTGGATATCCTGTCACCAGTCTCGGGATGGCGCACAGCGTACCTACCTGAAAAGTGTGTTTTTGAGCGAGAGTGTTTGTGAGTgcgcctgtgtgtgtttctacatCCTCCTTCCCCTTTTATGCTCTCTCCCACCTCCAGTGAGGGGCATTGGGGGGAGAGTTACAAAGCGTTTGTTTGCACAaagcaaattatttatttttctgtgtcgTCTCTGTTTAGAAAGaatcaatgttattttattgtaccaTCTCTGTTACCAGAACATTTATGGGTGGAGAGGGGCAGGGACTAAAGGGAATAGCATAGCAAAGCAGGTGGgaaagtgtgtgtctgtgtgtgtgtgtgagcatgcaTGCCTGCATGCGCTCAAAGAGCATGCTTTAGTTCCTCTGGGTGATTTATTTACGTAGTTGGATTGATTCAAACACAGTTTCTGCTTCAGAATTAAGCTGGTCGGACAGATCCTCGTCCCCATGGACACAAATGGCAATAATTCTCGGTCAGTCGTACAGATGGGTAACAGTGTATATGAATATAGAGTTTTTATTGTCTTGAGATGGTGTTTATTGCTAAATGTTTATACTTCCATGTGAGTAgacgtgtgcatgtgtgtgtgtgttagcacaTATGCTTGAGTGTATGGCCGATAAATTAGGTTGTGACCTCTCTGTGTGTCATTGTATTTGACAGCATGAGAGGTTCGATGCGTATCTagtttatatatactgtacactgtactgtatatggtaTCTACTGTAGAGGGTGTGCTGTTATAAGGAGCGCTATGCTGTGTTGCACAAAAAGAAATACTGCTATCCTGGTTTTTGGGTTTACTGAGCAAAATGgtacaaatggagaaaattaAAAGCCaaattgaagattttttttcctcgGTTTCTCCAGTGAGCGGCCTCAAGGCTGATAGATTATGCGGATGTTGTCAAATTATGCTGGACACCTATCAACCTCTCTGACATTTTAACTTGGTCAGCCAGACCTTTTCTTCTCATTCAAATGTTGCTCTGCTTACCTAACTCACTCTGAGAGATAGGACAAGAGACTACATGCAGAGCCGCTGGGAATTCCAACTTTTTAGCTCCTGAAGGAAAAATCCTGAGTTACTGCGAGAACCACTGTTCCTTCCATAAGGACAATGGAAAGCTCCAGTTACTCAACACCATGatgtctcttctcttccttGGGAAACAATGCCAACAAGTCAACAAAATCTTCACGTCATTTTCTCTCTAGAACTGCTCATTGGTTTAACTTTCAAGTGTTTGTGTTATTAGATCAAATAAGATGTTGACGGATAAATGAATCTTGTCTGGAAGGAAGAAAAATTGTTTACCTATGAAAATGCCCCCTGATTTGTTCTAAACCAACAAGCATTAtgactgtttttcttttctttctcctttggTGTCATTTTTAGTATGCTTAtgctttcttcttctgctgcatGGAGTTTTTATTTGGTAGAGTTATTTTCTGAAACATCACTTTTTATGAGGGGCCATGCACTTGAACTATCAGGTACTCTGTAATTTGGGAAACGCTGAGGAAAAACATTGTTGCTGAGTATCTGCATCCATTTAAGACCACAGCTTACATCTTCTACTTCAGCATGGTAATGCATCATCAAACTGCTCACAATGTGTTCAGATTTTTGTCTTTCCAGTCACTGGATCTGAATCCTGTAGAACACTTTGAGATTTGATAGACTGTCAGCTTCTTATTATTAAAGCGCTCTTTGAAAAATCAGCAGGAATTGTGCAATGCACAACATGGACCAGAATCTTAAATGAAAGTTTCCAAAATTGTGTGAATTTAGTTAGCTGTTTGCCTTTGCGCCTGggctttaaacataattttcGTTTGACATTTTTCTGGAATCTCCATCCAAGATGATGTGTAGTCCAGTATTACACATAATCCTGTCCTTGAGAGCAGTTCCAATGATGtttcaccaacaaaaaaagCTAGAAAACCCACCttgaaagtgtttttcattagaaTTTCAGTGGATGTCCTGATTTTCCCGAGCATTCCTAAATTACAGTCTCTTCACATCATTGTCTGTGGCTACATAAAATTCTCAGACTGCCAAATGTTAAGAAAATGTCCACTGGATTCTGTCCTCTGGATATATCTGGCTTTACATGTTGCTTGACAGCTGGTCATCAACAATTTTAAGGACTACTCCAGCCTGTATTAGTCCACTGCTTCTCTAATGTGAGACTGATTTCAGTGAACAGAAAAGAACAGAGATCTGCTGACTCAAAACAAAGTGTTTTGTTTTGGGCTTTAGCATGTACCCGCTGGTTTTCATATAAGTGTGTTTGGAGACAATGGGCAGCTTACTGTATTAGTGTACTAGTGTACTAATGGGTAGCTACACTGGAGTGTTTTTCTTAAAGCTCAATTCACTGGCTTTTTTCCATAGtcttaaaaacatattataatgtaaaaaaaaaagaaagagaaaagcctAATCCAGCCTGCCATAATACCTAGCTGTGAGCTCATATAAAGGACTGCCAGTGTAGTAGGACCAAATCTAGACCTCATCACCTCACCCTGATACAGACACCAGATTTTCTTCCTCTAACTGTGTTACTACTGGTACATGGCCCCTCATAAAATCTTTCCTGTGCACTATAGTAGTTATTTTTACCTACAGTGGGGATGTGGGGTGGGAGCCTATCCGGATAAAGCTAAAGCATCTTACTGCTGCTCAGATTCCCATTATATGCAAATATTGTTTCTTGAATAAAGAATGTAAACCTGT

Function

symbol description
zyg11 Predicted to be part of Cul2-RING ubiquitin ligase complex. Is expressed in female organism. Orthologous to several human genes including ZYG11B (zyg-11 family member B, cell cycle regulator).
zyg11b Involved in positive regulation of proteasomal ubiquitin-dependent protein catabolic process and protein quality control for misfolded or incompletely synthesized proteins. Part of Cul2-RING ubiquitin ligase complex.

NR:

description
protein zyg-11 homolog B

GO: NA

KEGG:

id description
K10350 ZYG11; Zyg-11 protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007259482.3 True 5415 mRNA 0.47 16 65225005 65245689

Neighbor

gene id symbol gene type direction distance location
trnad-guc_3 NA coding downstream 152192 65072742 ~ 65072813 (-)
trnad-guc_2 NA coding downstream 152790 65072144 ~ 65072215 (-)
LOC103032200 LOC108415433 coding downstream 163397 65048058 ~ 65061608 (-)
ipo13 ipo13,LOC107697216,LOC107593276,LOC107691006,LOC107745904 coding downstream 205770 64961081 ~ 65019235 (-)
pfas pfas,LOC107593806,LOC107737373,LOC107556148,LOC107665308,LOC107737297 coding downstream 268776 64935065 ~ 64956229 (-)
LOC103029766 angptl1,LOC107658173,LOC107739855,LOC107669140,LOC107712858 coding upstream 124681 65370370 ~ 65418481 (-)
LOC103027441 NA coding upstream 337294 65582983 ~ 65586569 (-)
LOC103027761 NA coding upstream 346990 65592679 ~ 65597459 (-)
LOC103027150 LOC108415562 coding upstream 352623 65598312 ~ 65601539 (-)
jun jun coding upstream 360903 65606592 ~ 65608774 (-)
G30900 NA non-coding downstream 65721 65154118 ~ 65159284 (-)
G30869 NA non-coding downstream 202053 65022352 ~ 65022952 (-)
G30857 NA non-coding downstream 338512 64885135 ~ 64886493 (-)
G30855 NA non-coding downstream 348335 64875838 ~ 64876670 (-)
G30823 NA non-coding downstream 404893 64813060 ~ 64820112 (-)
G30919 NA non-coding upstream 35730 65281419 ~ 65454260 (-)
G30942 fam20b,LOC107597857,LOC107712860,LOC107658171,LOC107669149 non-coding upstream 227448 65473137 ~ 65474665 (-)
G30980 NA non-coding upstream 346134 65591823 ~ 65592054 (-)
G30990 NA non-coding upstream 431821 65677510 ~ 65681603 (-)
G31021 NA non-coding upstream 482790 65728479 ~ 65728703 (-)
trnad-guc_8 NA other downstream 127332 65097602 ~ 65097673 (-)
trnad-guc_7 NA other downstream 131856 65093078 ~ 65093149 (-)
LOC103036530 cyp2p7,cyp2j20,LOC108415355 other downstream 425829 64774684 ~ 64799176 (-)
scfd2 scfd2 other downstream 1461332 63528281 ~ 63763673 (-)
usp46 usp46 other downstream 1739984 63433792 ~ 63485021 (-)
LOC103031958 myo6 other upstream 1616776 66862465 ~ 67044318 (-)
G31424 NA other upstream 2178183 67423872 ~ 67432424 (-)
G31437 NA other upstream 2258060 67503749 ~ 67528337 (-)
arpc5 arpc5,arpc5b,LOC103045524,LOC107599090,LOC107698380,LOC107732423,LOC104921830 other upstream 2609917 67855606 ~ 67885433 (-)
LOC103046133 LOC108439589 other upstream 2686871 67932560 ~ 67940713 (-)

Expression


Co-expression Network