echdc2 (echdc2)


Basic Information

Item Value
gene id echdc2
gene name echdc2
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 65212693 ~ 65224500 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007259489.3
TGGTGATGGTCCTGTACTCACAGTGGAGCGGACACACTTCTTTCTCCAGACTGAGAAAGTTTAGATATGGGACAGGAGGAGCTCACTGTGGGAGAGAGGTTCAGGAAAGCAGGTTAATGTTAGTTATCTGGTTAAACAAacacaaggagagagagagaggtgctgAGTCAGTGTTGAGGGCTGGAGGTGCTATGGGAACAGCGTTTGCGGAAATGGAGAGAAACTGAAACTGGGTAAACAGACTGGGAGTCTGAGCACGGGCTCTGTGGTAAACTCGGGAAGTTGGCGGCGGGGAAGAAACAGGCCACGACCTCCTCAGTTCATAACTTTTCCCTTCCGCCTgaactcactcattcactcactctctcagtcACTCGCTCGCTCGCTGCGCTCAGACACACCGCTCCATGGCGGCGCTGCGGAGGCTCTCAGTGGGGTTCTGTGCGCTGCTCCGGGGTCCCGGTCCGGCGGCTCCTCATGGCTCCTTCTCTCACACCGTCACAGTGCCCAGGACCGGGAGGTGCTGTGTGCGGCCGCTGTGCAGTAAAGGGCCGGACTCAGGCTCTGTGGAAGTGGACCTGAGGCGGCTGGAGGGTGGAGACAGTGGTATAGTGGAGGTGCTGATGTGTCGGCATCGGGCGCGGAACTCACTGGGCCATGCGTTTGTGGGTCAGATGCGAGAGTTGGTGTCAGGCTTGCACTATGACTCTGCAGTCCGTGTGGTGGTCTTTAGGAGTCTGGTGCCAGGAGTATTTTGTGCAGGGGCAGATCTTAAGGAGAGAGCTCAGATGAGTAACCCTGTGGCTGAGAAGTTCGTGCATGGTCTTCGCTCTCTAATGAATGAAATAGCTGCGCTGCCCATGCCGACCATCGCCGCTGTGGACGGCTTTGCTCTTGGAGGCGGGCTGGAACTGGCACTGGCCTGTGACCTCCGCACCGCAGcaTTCTCTGCACAGATGGGCCTGATTGAGACCACACGAGGTCTTCTTCCAGGGGCAGGGGGCAGTCAGAGGTTGCCTCGGGCAGTGGGCTTTGCAGTGGCTAAGGAGCTGATCTTCACTGGGCGACGTGTGGGGGGGCAGCAGGCTCTGGAGCTAGGGCTGGTCAACCGGGCTGTCCCACAGAACGAGAGCGGAGACGCTGCCCATAAAGAAGCTCTGAACCTGGCCAGAGAGATCATCCCTCAGGGTCCAATCGCAGTGAGGATGGCAAAGGAGGCCATGAACCGAGGGATCGAGGTGGACATCGCTTCAGGAATGGCTATCGAGGGCATGTGTTATGCCAGGGTCATTCCAACCCGAGACAGACAAGAGGGAATGGCTGCTTTTATAGAGAAGAGAACTCCCAGATACACTGGAGAATGAGCAGGCAAAATGACACGCACAATAACACACATTTCATgatttcaaaagagaaaaagaaacagccGTTTTACTGGTTgctgtaatataaatataaaggatGGATATATGTTGTGTTTTTCTTAAGCTCTTGAATGGAATTTAGACATGAAGAGCAGATTTAGGTGTAGATTCTGTACTGCTTTGTGAATGTTAATAAACTATATGTACAAATA

Function

symbol description
echdc2 Predicted to enable enoyl-CoA hydratase activity. Predicted to be involved in fatty acid beta-oxidation. Predicted to be active in mitochondrion. Is expressed in brain; otic vesicle; pronephros; and sensory system. Orthologous to human ECHDC2 (enoyl-CoA hydratase domain containing 2).

NR:

description
PREDICTED: enoyl-CoA hydratase domain-containing protein 2, mitochondrial

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0003824 catalytic activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007259489.3 True 1576 mRNA 0.54 9 65212693 65224500

Neighbor

gene id symbol gene type direction distance location
LOC103031359 NA coding upstream 1188 65183357 ~ 65211505 (+)
LOC103041220 LOC108414547,LOC108258072,LOC107597850,LOC107721804,LOC107581484,LOC107658162,LOC107712838 coding upstream 66066 65107510 ~ 65146627 (+)
trnad-guc_6 NA coding upstream 137506 65075116 ~ 65075187 (+)
trnad-guc_5 NA coding upstream 138051 65074571 ~ 65074642 (+)
trnad-guc_4 NA coding upstream 139021 65073601 ~ 65073672 (+)
LOC103029237 LOC103029237,LOC108414737,LOC107658161,LOC107597864,LOC107669143,LOC107721808 coding downstream 22031 65246531 ~ 65249310 (+)
ralgps2 ralgps2,LOC107739854,LOC107712857,LOC107658172 coding downstream 22835 65247335 ~ 65454308 (+)
fam20b fam20b,LOC107669149,LOC107712860,LOC107658171 coding downstream 232237 65456737 ~ 65490821 (+)
LOC111191945 NA coding downstream 624627 65849127 ~ 65849762 (+)
plpp6 plpp6,LOC107683852,LOC107581521,LOC107669136,LOC107712867,LOC107739850,LOC107597802 coding downstream 630434 65854934 ~ 65862128 (+)
G30718 NA non-coding upstream 53429 65050824 ~ 65159264 (+)
G30726 NA non-coding upstream 131742 65076472 ~ 65080951 (+)
G30722 LOC108415433 non-coding upstream 153243 65057519 ~ 65059450 (+)
G30710 ipo13,LOC105910849,LOC107573327 non-coding upstream 225387 64984478 ~ 64987306 (+)
LOC111190945 NA non-coding upstream 230292 64964312 ~ 64982401 (+)
G30763 NA non-coding downstream 145908 65370408 ~ 65371798 (+)
G30767 NA non-coding downstream 179022 65403522 ~ 65441108 (+)
G30771 NA non-coding downstream 205734 65430234 ~ 65432399 (+)
G30772 NA non-coding downstream 206959 65431459 ~ 65433073 (+)
G30774 NA non-coding downstream 221854 65446354 ~ 65446930 (+)
trnad-guc_10 NA other upstream 113331 65099291 ~ 65099362 (+)
trnad-guc_9 NA other upstream 114120 65098502 ~ 65098573 (+)
LOC103031672 NA other upstream 125913 65077780 ~ 65086780 (+)
LOC103033886 LOC108257901,LOC105910874 other upstream 165715 65022419 ~ 65046978 (+)
kit kit other upstream 942998 64231244 ~ 64269695 (+)
G31000 NA other downstream 604281 65828781 ~ 65837365 (+)
G31355 NA other downstream 1989805 67214305 ~ 67215186 (+)
LOC103027733 NA other downstream 2258835 67483335 ~ 67506898 (+)
G31407 NA other downstream 2272703 67497203 ~ 67497697 (+)
hmcn1 hmcn1,LOC107698379,LOC107732365,LOC106560561 other downstream 2466941 67691441 ~ 67844634 (+)

Expression


Co-expression Network