LOC103031359



Basic Information


Item Value
gene id LOC103031359
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information


Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 65183357 ~ 65211505 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence


>XM_007259490.3
AGAATGGGCAGACATTCTGAAGATGGTCAGAAAGGTTACTTGTGTACAGCAGTGAGAATGAACTTATAATATTATACTCTTTTATCATGTTCTTCGTTCTCCAGATCAGATGATAATGAGTGAAGCAGCCCACTGGACTGGAAACATCTTCCTGTTAAACTTCAGGCATGTCAGGACAAGCTCATATCTACACCTCAGTGGACACTGCAGACCATCCTAGATCAACACTTCCAGAAGACTCTCCCCTGACCTTCAGCAGAGCAGATCACTTCTCTCACTGTCTGTTTACAGATGTTTACTGACAGACAAGTAATATCTTCAAATTTCAGTTTCTTTTTGTCCTCTGTCAACGTGTGAGTTTTTCAACACTTGCCTGATTATATGCTGTTTTAAGcatgcaTCGCTCAGACTGGATGATGTGGCCGAAGGAGGCtcagaggagagaggagaagagggcTGAGGCGCGGCTGGCTGAGGGCTTGCAGAGACTTGATGAGGCCAAACATTACCATCTCAACACACTAAGCCGAGAGCAGCGCACTCTACACCGTCACCTCCTGGCCATCAAGACAGGGAACCGGTGGAGAGGATTACATGCTATGGGATCACGACACACCAATCGTGACCTCAGCCACCCTGCTGTGTCCTTTCAGAAGACCCTGTTACCCATAATCCCTCCTACAGGCAGGGATCTGGACAGATACAGgccAGCGAAGCCTCAGTCCAGCTGCTCTCTCCAGGCTCGTGTTCAGGAGTTTATCAGCAGTGGGGAGAACAGGGCCGATAACACCACAGCTCCACTCTGTCTACCTGAACTCAAACTCCAGCCCCCCCACACACTGTCCCCAGCtgctcctgagagagagagcagggaaagagacacacacaggaACAGAGTGAGGGAGGGTCAAAGTTCAATGTGGGAAACGGCAAAAGACAGGCCAAAAGACAGTCAGAAAGTAAGGGAACAGGCAATGGTGTTAAAGAAAGCAGACAAGGACAGTGAAAAAGCAGAAGAAATTGATGAAGCCACGCCCCCATCTTCCCCCCTCTCTGAGACCCTCTGTGCTGATGGTCGGTTGAGGACTGTTCACGTTCTGCCTAATTTTGCTCAGGCCCTTGCTGAGGCACGCAAAGCCAGATACATTAGACACCGCGGCCGACCTCCACAGGAAAGAGAGCTGAGCATTAAAGAGATATTCCCAAAAAACTCCAGAGACACATTCAGCAAACACTGATTATAACACACAACCCAACATTAATCAGgcctttttaaggtttttttttgttttgttttgtaaataccatatacagtacataagaTTCTCCATCACACTGTTTCACACAAGCAGGATCAGATAGAAACCCTGCAGCATGCTCTAACGTTTACTAAAATGTCATATGATAGAGTACTAAACTTAATTTCCAATAACATTTTCTCGCATAATGCATTCTAGATGTTTAAATTGTTAACTATCTGGTAAAACCCAGTTAATTCCCAACAGTGTTAGAGTTTAAATTAGCACATATATTTACTTTAAGTAAATGTTATTGATAGTTAGATTCAACTTTCAGAAATTTAATGAAATGCAATCCAAATAAACTGTTAGCAAATGTTCTAGTAAAAGTTTTTCTATGCTGTAACCTTCAGACAGTTTCAATATATTGGTGGTACACAGCAGGAGAAAGGAGTTGGGGAGGGTGATAAATAACTCTGAAGTATTTGACCAAGATTAGCTATATGTTTGCACAAGCAATCAGAACATCTCTGCTACAAAagaattaaaaacttttttactgcacctgtgtttaatcacaactgtgcaaaatgtgtgtaaacattACAACTAACACCATAGATGGGGTTAATGTAACAGGCAAGGTGCTAGTTGTAATGTTTGTCTATTAAACTGACCCAGAATTTAACACAGTTAATAAAATGCAATTCTATACTGTTTGAATCAGGTTTGAAACATGTTTTCCAgcataaataaattttaaaaaaagctgcATCTAAATAATTATGCTTAGTAAAACTACTCTTTGCACTGGGGCTGTGAGAGTAAAATATCCTCTTTGCCCCTGCACAAGTACCAGTATAATGAAACTGGGTTGCGATCTTCTTTACTAGATGATATGtgtgggaaaaaagagagaaacagagaatgaATAAGAATAATCCCACCAGCAGTGCCTATGAATAGTGCAGCAGTTTAGATATCCTAGCAACAACAAAACAGTACATTACAAGACTGTAGATATGAGTGTTCATAATTAACACAATGTGGATAATGTATTACTCTGAGAACTGAGgttactaactttagcagctgTCAGCACGTTGCAATGCAGCACCTTGTGTACAGTGACAGTAATAAGCATAATTTCTTCTTCAGATTAAagagatttaaaacatttttgtcatttgttaTACATTGAATACTAAGGTTTTCCCTTGTGTTAAATTGCCATATTAGATTTTGTGTAACAGCAACAATAGACAGAGTAAGGTTCAACATACTGGTTTAATAATTGCTTTGATATCTAGAAACTTATTATGTAACTATAACTGTCAAACTATTGTAATTAACCTGCATATTTATAAATTTGTGCATGAATCACATTTTGTCTGACAGTTGTCCTATTGAGTGATAAAAAAGGCCCTTAAACTACATTGGCATTAAGTTGCTGCACCAATTTTTCTCTAATATGTGGTGTTTCTTACTATGACATCAACTTCTTGTTAGTGAAACTATAGACATATAAACTTTAAAATtctg

Function


GO: NA

KEGG:

id description
ko00533 Glycosaminoglycan biosynthesis - keratan sulfate

RNA


RNA id representative length rna type GC content exon number start site end site
XM_007259490.3 True 2780 mRNA 0.40 4 65183357 65211505

Neighbor


gene id symbol gene type direction distance location
LOC103041220 LOC108414547,LOC108258072,LOC107597850,LOC107721804,LOC107581484,LOC107658162,LOC107712838 coding upstream 36730 65107510 ~ 65146627 (+)
trnad-guc_6 NA coding upstream 108170 65075116 ~ 65075187 (+)
trnad-guc_5 NA coding upstream 108715 65074571 ~ 65074642 (+)
trnad-guc_4 NA coding upstream 109685 65073601 ~ 65073672 (+)
mmachc mmachc coding upstream 115959 65061824 ~ 65067398 (+)
echdc2 echdc2 coding downstream 1188 65212693 ~ 65224500 (+)
LOC103029237 LOC103029237,LOC108414737,LOC107658161,LOC107597864,LOC107669143,LOC107721808 coding downstream 35026 65246531 ~ 65249310 (+)
ralgps2 ralgps2,LOC107739854,LOC107712857,LOC107658172 coding downstream 35830 65247335 ~ 65454308 (+)
fam20b fam20b,LOC107669149,LOC107712860,LOC107658171 coding downstream 245232 65456737 ~ 65490821 (+)
LOC111191945 NA coding downstream 637622 65849127 ~ 65849762 (+)
G30718 NA non-coding upstream 24093 65050824 ~ 65159264 (+)
G30726 NA non-coding upstream 102406 65076472 ~ 65080951 (+)
G30722 LOC108415433 non-coding upstream 123907 65057519 ~ 65059450 (+)
G30710 ipo13,LOC105910849,LOC107573327 non-coding upstream 196051 64984478 ~ 64987306 (+)
LOC111190945 NA non-coding upstream 200956 64964312 ~ 64982401 (+)
G30763 NA non-coding downstream 158903 65370408 ~ 65371798 (+)
G30767 NA non-coding downstream 192017 65403522 ~ 65441108 (+)
G30771 NA non-coding downstream 218729 65430234 ~ 65432399 (+)
G30772 NA non-coding downstream 219954 65431459 ~ 65433073 (+)
G30774 NA non-coding downstream 234849 65446354 ~ 65446930 (+)
trnad-guc_10 NA other upstream 83995 65099291 ~ 65099362 (+)
trnad-guc_9 NA other upstream 84784 65098502 ~ 65098573 (+)
LOC103031672 NA other upstream 96577 65077780 ~ 65086780 (+)
LOC103033886 LOC108257901,LOC105910874 other upstream 136379 65022419 ~ 65046978 (+)
kit kit other upstream 913662 64231244 ~ 64269695 (+)
G31000 NA other downstream 617276 65828781 ~ 65837365 (+)
G31355 NA other downstream 2002800 67214305 ~ 67215186 (+)
LOC103027733 NA other downstream 2271830 67483335 ~ 67506898 (+)
G31407 NA other downstream 2285698 67497203 ~ 67497697 (+)
hmcn1 hmcn1,LOC107698379,LOC107732365,LOC106560561 other downstream 2479936 67691441 ~ 67844634 (+)

Expression



Co-expression Network