mmachc (mmachc)


Basic Information

Item Value
gene id mmachc
gene name mmachc
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 65061824 ~ 65067398 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007259496.3
CCAAAGGTCTGTCTGGTGATCAGTGTGTTTCCATATGGCGACCTCCAGTCACAATGTGGATAATGTTGTTCGCACTCTGAGGGAGTCTTTAAAGACGTTAGGTTTTGAAGTATATCCTTTTAAGATTGGATGGTACAATGCAGTTGTTTCTCAGGCCCATCAACTCAAGTATTCAGCGGACACTCTAGCAGTGGTGGTGCTCAGTACTCCATCCATGTTTGAAAATTCATTCCTGCCATTCCTTCAGAGATGTTCCTGGAAAGACATTAGAGATCCTGTAGACCAGTGTGTAGCTCATGCCATCTCCACCTGTGTTTCTGAGCATTTCTCTGACCAGTCTGTGGACATCAGTTATGACTATGAGATGCAGTCGAACAGAAAACCAAAATTTCTGGCTCAGACTGCAGCTCATGTAGCAGGAGCAGCTCGCTATTACCAGCACACAGATATCGAAAATCCGCCATGGGGAAACAAGAAGATGTTTGGAGTCTGTATACACCCTCGGCTGGGGGGCTGGTTTGCTATCCGTGCTGTGCTGGTGTGGAAGGATGTTGAAGTGGGCAAAGAACTGCAGCAGGTACCCCCTCCTGACTGTGTTAGCTCACAGGAGGCCAGGATAAAGCTGCTGGAGAAATTTAACTACAACTGGCAGGACTGGACCTACAGAGACATTGTACCCACAGAGGAGAGCTATTCTACCCGACAGAGGGAGTATTTCATTACTCCTCCAGCTCAGCGAGGGGCACTGCTCAGACAGTGGGGTTTTATACCAGAGACAGAGACTAAAACAGTGAACAATATCTGACAGAAGATGTTTTTCAGCAACTTCTATTGCTGTGTATATAAATCCAGACATTTTCGTTTTCAGTTTGAGAAGCATCTGCACACATAATTTAATAATGATTTACTTGATTACTTATGTTTCCAGGAATTgttcacaataaataaataaatatacaataggatctgcttttgtttatttagagcaGGGGTTCCCAACCTTTTGCTACTCATACAGTgataaatagcaataaaaaacataGGCCTACCTTATTGACCATTTTCTTAAAGCGGTTGgaattgtattttttcttttgatttaggCTGCTCCTCTTGGTTCTTTTGGTTAGAGATACACAGGCTTCAGGGACTTTCGTTTCCAAATACcctgtttttaaccatttatccATGATGTGTAATGCTGCAATTATACTCTCATTATTAACACAACTAGCGTGTTAATCTACTATATCTGCCGGTGACTGCACTGTGCCAAACCAATCAACTAGCTCGAcccaaacatgttttatttgccAAATAAATGAACTTATCGTCTTATTAATTAACTTCACACCTTAAATTACATTTGCTGAactattgatatttttaaaataatttttactttgcaaaatagaaaaaaattgaCCTACAGTTCTCTTGCAGTACCTCTGCGGCCCCTTGGGAGCTGCGGCCCACAGATTGAAAACCATTGATTTAGAGACTTTTAAAAATCCACTTGGACCACTTGGGCCTACAGCTTCAACCCAGCATGGTTCTGCCACTGTCCACAGAACAGAAGAACAGATCCAGCAAAGCCAAAGCCCCTGTTTTCTAAAGAGGGTtttgattggcctgttctctacaCTTCCAGCCAATGCTTTTCTATTGCCCTTAAAGCTGAATTCACTTGTTagaatgtgtatgtgtatacagttaaaatctggattttttttaattatcatattttattatgttgcaTGTTTATTACACTGATGTTGCAGGTGGTCCCAAAACACAAATATGTATCCACTCTAATAAATTAATGATTTCACCAAACATCAAATATAACAACTGTTTCTTTTggagttaaatatttttttattgcacgTGTATTGTCTTAATCTACTGTATACTGCGGATACATAACTAGTACATAAACAAAACGCAGACAATCTAATCTGGCTAAAATTGGGATTTTTCCTATTCTAATCAATTCACATCACTGCCACTTTTGATTCGCCCACCTGCTGTGCACCAGTGTATGGAAATACCTGATTGGTTAATCTGTCAGAGAAACTCAATCAATCCGGTGAGGGGACTGATTGAGCTCTTCATCATCCAGGAGCAGGTAAATATAATATGATGAAGGAGGCGGTTTGGCGGTTTGTTATTGTTGACTGGTCGAGTGAACAGAGTTAAACTGTGAGTATAAAGACATGGTGGAGCGTTATCCTGTGATGGAGATGAACAGGAGGTGCGCTATAATACTGATTAGACACGGGGAAAAAGTTATGAAGGATGAAAATGAGGAGGAGAGTGGATGAAGTTCATGGTCGTACCTTGGAGGAAAGTGAATAAGCTGATGGTGGGGGGAGTGAACCGAGAACTTGAGctttactgtgtttattttaaaacattggtGAAGAGAAGGAGAATCCAGGAGTTTTAACTGGTTGACTGTGAGTTAGAGATGTTCCAGTGTTTGGCGCGGCGTGTAGCAAGAGAGCCTTTTAAACTCCTCGTGTCGTAGctgctgttttatataaagACGTTCTACTGTATATTAAGGGTATTTCGTGCGCGCGTGTGTATATGTAagttttttgtatttctctTAAATATATTCCGTTTTTCAATGCTTTAAACCTCGGAATTCAGAGAAAGATTATTAGAAATGGCtcttagagagaaagaaacgtAAACTGAAACAGATCTATAAAACTGAAGGCGAGTCAAAAAAGACCTGAATAaaactctcttctcttttccctGATTATTATATCTATTGTGTGACCTAAAACCGCGTTGAAtctccaaaaaacacaaaaacagagaaTCAGCCAATAGCACGGCGGCGCTGAGTTACCCAGGATGCACTGCGGGTTTCAAACCGCTGAGTTTTAGGATGTTTACCGTACTTTGTAGATAAAATGAGAGTTCGAAAAAACACAAATTGTGCTGTTTGTAGATGTTAGTGTGTTGATGTACAgactgtggtggtggtggtggtggtgtttttttttattaaccatGGAGtggaagtgtgagtgtgttggtgtggtgGTGAGGTTCTAGCTGGTGATCTTCAGTACACTCTTGTTTCTCTTCAGATCGCATAAATCTTTCGCCTTTTACTAAAGATTTCCGTGGGGAGGAACATTATGAGTATCAACTAATTTTTTGATGCCCTGCCGAAAGGCGGGGTT

Function

symbol description
mmachc Predicted to enable FAD binding activity; cyanocobalamin reductase (cyanide-eliminating) activity; and demethylase activity. Acts upstream of or within embryonic viscerocranium morphogenesis. Predicted to be located in cytosol. Predicted to be active in cytoplasm. Human ortholog(s) of this gene implicated in methylmalonic aciduria and homocystinuria type cblC. Orthologous to human MMACHC (metabolism of cobalamin associated C).

NR:

description
methylmalonic aciduria and homocystinuria type C protein

GO: NA

KEGG:

id description
K14618 MMACHC; cyanocobalamin reductase (cyanide-eliminating) / alkylcobalamin dealkylase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007259496.3 True 3206 mRNA 0.40 4 65061824 65067398

Neighbor

gene id symbol gene type direction distance location
LOC103034427 NA coding upstream 127356 64926535 ~ 64934468 (+)
LOC103035066 NA coding upstream 171171 64880938 ~ 64890653 (+)
LOC103035382 LOC108415267 coding upstream 185109 64869851 ~ 64876715 (+)
LOC103036008 LOC103036008,LOC108415307 coding upstream 193411 64859330 ~ 64868413 (+)
LOC103041527 LOC103041527 coding upstream 204999 64848648 ~ 64856825 (+)
trnad-guc_4 NA coding downstream 6203 65073601 ~ 65073672 (+)
trnad-guc_5 NA coding downstream 7173 65074571 ~ 65074642 (+)
trnad-guc_6 NA coding downstream 7718 65075116 ~ 65075187 (+)
LOC103041220 LOC108414547,LOC108258072,LOC107597850,LOC107721804,LOC107581484,LOC107658162,LOC107712838 coding downstream 40112 65107510 ~ 65146627 (+)
LOC103031359 NA coding downstream 115959 65183357 ~ 65211505 (+)
G30722 LOC108415433 non-coding upstream 2374 65057519 ~ 65059450 (+)
G30710 ipo13,LOC105910849,LOC107573327 non-coding upstream 74518 64984478 ~ 64987306 (+)
LOC111190945 NA non-coding upstream 79423 64964312 ~ 64982401 (+)
G30683 NA non-coding upstream 152370 64892398 ~ 64909454 (+)
G30643 NA non-coding upstream 237675 64811379 ~ 64824149 (+)
G30726 NA non-coding downstream 9074 65076472 ~ 65080951 (+)
G30763 NA non-coding downstream 303010 65370408 ~ 65371798 (+)
G30767 NA non-coding downstream 336124 65403522 ~ 65441108 (+)
G30771 NA non-coding downstream 362836 65430234 ~ 65432399 (+)
G30772 NA non-coding downstream 364061 65431459 ~ 65433073 (+)
LOC103033886 LOC108257901,LOC105910874 other upstream 14846 65022419 ~ 65046978 (+)
kit kit other upstream 792129 64231244 ~ 64269695 (+)
G30362 NA other upstream 1716131 63335734 ~ 63345693 (+)
LOC103035278 NA other upstream 2130691 62926018 ~ 62931133 (+)
LOC103045797 NA other upstream 2208536 62821743 ~ 62853288 (+)
LOC103031672 NA other downstream 10382 65077780 ~ 65086780 (+)
trnad-guc_9 NA other downstream 31104 65098502 ~ 65098573 (+)
trnad-guc_10 NA other downstream 31893 65099291 ~ 65099362 (+)
G31000 NA other downstream 761383 65828781 ~ 65837365 (+)
G31355 NA other downstream 2146907 67214305 ~ 67215186 (+)

Expression


Co-expression Network