LOC103034427


Basic Information

Item Value
gene id LOC103034427
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 64926535 ~ 64934468 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007259501.3
ATAGCGTACAGTGATGCAGGcagacagcatttctctcagtctctgctcttacacacacacttctcatcAACATGCACACCTGTCACAACTCCTACAACAGGCCTCCTCTGGTCTCAGAGAGTAGAAGTCAGGGTCAACCGCAAGGCCAGCACGTGAGAAACGGAGAGGACTCCTCTCAATCATGCGTTACTGCAGCCAACAGGGACCTCCACTGCCCAGTGTGCTTACAGTCATCCATCTTTCCAGTGGAGACAAACTGTGGGCATCTGTTCTGTGCTCCCTGTCTCATATCTTACTGGAAACACGGATCCTGGTTAGACGCTATCAGCTGTCCTTTGTGCCGGCAGAAGGTGAGTGTGATGTCTCATCTCTTTGGTGAAGGCAGACTGGACAGGAAGCAGACAGAGGTGCTGGACCACATTAGAGACTATAATAAACGCTATTCCGGCGCACCACGGAGGCTGAGTGATTACCTGTGTGATGCTCCTCTATTCCTGCTGCTCATATTCCGGACTCTGGGCAACATGGGCGGACTGGTGTGGCTCTTCCTGCTCAGGGTGGCAGTGTGTGGATTCGGGGCTGCTGCCTCTCTCGTCTCCCCACTGGAGGCCGTTTCTGGACCCTTCAATGGGGCGGTGGGGCTCCTGGACGACCTGGCGGTGgtcttcctcctcctcatctCAATTCTTAACATCCACCAGCAGATGGGAGCAGAGAGGACACCCAGAAGAAACACGGTCACACAGGGAATTCTGACAGACACGCTATAAACGGGAGGACAAAGGACAACTGGACTGATAAGCAGGATAAATGAACtctatggtagtataggggtcCTGCTGGGCTGCTACACAAAGATGGTTTACAGCATACAAGCTTTTAAACTGGAGTATAAGTGTATAAATAGCAACACTGCGGTCTAGATGTCAGTTTCAAATGATATCTGCACTCTACATGTATATTGCACTACCAATACCCTCCAGAACAGACTGTGATACAAGCCAGAGCTTTTTAACGAAACTTGAGATAcctacaattaaaaaaacaaaacaaa

Function

GO: NA

KEGG:

id description
ko00040 Pentose and glucuronate interconversions
ko00053 Ascorbate and aldarate metabolism
ko00830 Retinol metabolism
ko00980 Metabolism of xenobiotics by cytochrome P450
ko00982 Drug metabolism - cytochrome P450
ko00983 Drug metabolism - other enzymes
ko04146 Peroxisome
ko05204 Chemical carcinogenesis - DNA adducts

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007259501.3 True 1054 mRNA 0.50 6 64926535 64934468

Neighbor

gene id symbol gene type direction distance location
LOC103035066 NA coding upstream 35882 64880938 ~ 64890653 (+)
LOC103035382 LOC108415267 coding upstream 49820 64869851 ~ 64876715 (+)
LOC103036008 LOC103036008,LOC108415307 coding upstream 58122 64859330 ~ 64868413 (+)
LOC103041527 LOC103041527 coding upstream 69710 64848648 ~ 64856825 (+)
LOC111190912 NA coding upstream 92458 64826695 ~ 64834077 (+)
mmachc mmachc coding downstream 127356 65061824 ~ 65067398 (+)
trnad-guc_4 NA coding downstream 139133 65073601 ~ 65073672 (+)
trnad-guc_5 NA coding downstream 140103 65074571 ~ 65074642 (+)
trnad-guc_6 NA coding downstream 140648 65075116 ~ 65075187 (+)
LOC103041220 LOC108414547,LOC108258072,LOC107597850,LOC107721804,LOC107581484,LOC107658162,LOC107712838 coding downstream 173042 65107510 ~ 65146627 (+)
G30683 NA non-coding upstream 17081 64892398 ~ 64909454 (+)
G30646 NA non-coding upstream 93698 64720955 ~ 64832837 (+)
G30643 NA non-coding upstream 102386 64811379 ~ 64824149 (+)
G30644 NA non-coding upstream 103876 64730064 ~ 64822659 (+)
G30664 NA non-coding upstream 134736 64789121 ~ 64791799 (+)
LOC111190945 NA non-coding downstream 29844 64964312 ~ 64982401 (+)
G30710 ipo13,LOC105910849,LOC107573327 non-coding downstream 50010 64984478 ~ 64987306 (+)
G30718 NA non-coding downstream 116356 65050824 ~ 65159264 (+)
G30722 LOC108415433 non-coding downstream 123051 65057519 ~ 65059450 (+)
G30726 NA non-coding downstream 142004 65076472 ~ 65080951 (+)
kit kit other upstream 656840 64231244 ~ 64269695 (+)
G30362 NA other upstream 1580842 63335734 ~ 63345693 (+)
LOC103035278 NA other upstream 1995402 62926018 ~ 62931133 (+)
LOC103045797 NA other upstream 2073247 62821743 ~ 62853288 (+)
LOC103046322 clic5b,LOC108411995,LOC107678823,LOC107726746,LOC105897798,LOC103355727,LOC108258161,LOC107743284 other upstream 2990452 61926080 ~ 61936083 (+)
LOC103033886 LOC108257901,LOC105910874 other downstream 87951 65022419 ~ 65046978 (+)
LOC103031672 NA other downstream 143312 65077780 ~ 65086780 (+)
trnad-guc_9 NA other downstream 164034 65098502 ~ 65098573 (+)
trnad-guc_10 NA other downstream 164823 65099291 ~ 65099362 (+)
G31000 NA other downstream 894313 65828781 ~ 65837365 (+)

Expression


Co-expression Network