LOC103038194


Basic Information

Item Value
gene id LOC103038194
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 64694962 ~ 64702540 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007259513.3
AATCAGAGAGCGGTTCAGTGTGTGGAGTAGAGATTTGAAAACTGAGAGAGGGGCTAACGTTAGGTCTGAACTTGTAAATCAGATAACTACAGATAAGTTACTCTGATTATCCTTAATTACGGTTTTATAGTTATAATGGAGGAGCGGCGAGGTGCGGCCGGCCAGGGGCTCCGGGATACACACGTTTTTGAGCAGTTCAAGAGAAACGATGAAGTGTTCAGGAACACAATGGAGGCGATTTTCCAGAAGTATTCAAACTTGGATGAGCCAGGACCTGATGTCTGCTTTAAAACGATGACCTTCAGCACCAGCAAAGGTGTAGTGCCCCTCCAGAGTGCAGAAGCAGAACGGGAGCTACAACATTTGAGGaaTCGTGCTGAGCAGTCTGTATTGGtgttgGATTACTCTAAGGATGACCAAATGGATGTAACACAGAGCACTGAGAATGACATTGACTCTTCCCTTGAAACAGAAAACGGCGATGTCAGCATGTGGCATGGTACTGAATCATCTCAGCTGTCTGTAAACTCAGTAAGTGGGTCTCGAAGCTGCTTATGGGATCTCTCTCAGCctgaggaagaggatgaggatCTGGAGAGAACACTGAACAGCCACAACAAAACCCTGCTCGACATTTATCCCAGCATGCTTAACCAGATCGGAGAGGTGTACAGACGGCAGCATGTGACCAAAGCAGCCAGTGCTGTGTTGCGCCGGTATCGGCGCCAGTGCTGGCATTCTTCACAAGCACAGAGTCGCAACCATGTTCTTAGCAAGAGCTTTAAGCACACAGCAAATAGGACAATGGAGAGTTCAGTTTTTGTCCAGAAACTACCCCACAATGACATAACCAGCTATCATGAAGATGAGTCTAGCTCTAGTCGGGAAGCTCTAGTTGGCAGAAGCAGTCTGAAGCCTTCACCCATGAAGATAAACAAAAACTCATTCCTTGCCTCTAGCAGAAGCAATCAGGAGCTTTCACCATTGATGACTAAGAGAACTTTATCCCTTGCCTCTATCAGAAGCAGTCCGGAAATGTCATCATTGAGAGCCATGCGAGATTTATCCACTGCTTCCACTAGCAAACATCTGGAGCTTTCCCCATTGACAACTAAGAGAAATGTATCCCTTGCCACCATTAGAAGCAGTCGGGAGCTTTCCCCATTGAAGGCCATCCGAAATGCGTCTCTtgccaccagcagcagcagtcaggAGCTTTCACCGTTGAAGGCCATTCGAAATGCATCTCTTGCCACCAGCAGCAGTCGGGAACTTTCCCCATTAAAGGCAATCCGAAATGCATCTTTTGCCACCACCAGCAATCAAGAGTTTTCGCCAGTAAAGACCATCCATAACTCGCCCTTTGTTTCCAgtgcttgtttttattcacCTAGAAGAGctgatggtgagaacagtcctGCTTGCGAAAGTCGATCCCAATGGAAAAGTTCAGGTTTGCATTTGAATAGACAGCAACAGCATCAACCTGTTCGGGTCTTGGACCTTTCAACACCTCCATCTTCTGCATACGACACTCAGCTTGATTGGATGCCAGATTCTAGTGGTTTTCTTCCCTCTGCCGTTTTGAGCCACAGACGTTCTATGCCTAATTCACCACTGAAAGTAGGAACAAGTGTCTCGTTAACAGGCCAAGGAGGCAGACCACTCATACCTTCGTCATCTCATCACTGTGCCTCACAGTTAGGGCAACAGTTTTCTGGTGCCTTTGTGGAGAGGGAGTGCTTCCACGACCATGAATATTCTTCAATCCCGTCCCCAAGAAAAACTCTTACTGTTTATCCATCTTTTGATGGTAGAAGTCCTCTTAAACGAAGAGTGTTTAGTCTAGAACAGGAACAGCCAACATCATCCATGTACTATTCTGAACAAACTGTACCTGTGAATCACACCGCCACCTTACAGACATACAAACCTCCTTACAGAAGTCAGCAAGAAGTGTCGTCTTCGCCCTACCGTTCTCCTCGTGTGCTTTCTGACCGCCAAGAGAACCATGCTATGTCGGAGGTCCTCCAACACAGCACCAAACTAACAAAACTTTATCGATCCTTCTCTGACAACCAGTCCACATCATCTTTTGTATCCAACATGTGTAGCAGGCAGATTGATGGACAGTTTAGGAGCCTCTACCACTATTTCATCTGTCGAGGCAATTCCCCCTCGTGCCGAACCTCCTCTTGTCACCTATGTGAGAGGCAGTCTCAAACGGGGGATCAAAAACCTTCTTCTATTTTGTCCAACGTGTCTGCCTTGGCTCTAACACCTGTTGGGAGTCAGATGAGGAAGCGACGCAGGCAGCCTGAAGTAGAGGAATCCACAAGAATCAAGCGCTTTCGTGAGAGTTGTTCcccaaagcagcagcagcagcagcaatttACCAAATATACAAGTCCAGCAGTGGCCAATCCTACTGAGGAAAAGCGCATCTGGAACAGGGCACTTCTGCTTCAGTGTCCCAGCCCTGGATTTCTGAGAGCCAGCGGAAGCACCAGAAAAAGCTCAAAGTCCCAAACAAGCTTGCAGAATCATTCATACTCCCCATCTTGGAGGGACACGTCTAGTTTTGTTCATGCAGCTGAAGCAACATCACCTGTGAGAGCATGCAATCAAAGTGGAGTTTCACTTTCACCAAGTGTGTCAAGAAGACGACTAATTTACGGGCCTCTCCAATGAGCTCTCCACAGTCTGCTTTAACAGATCCATTCATGCATCCCCCAGTTTACTAATACCAAGTGTCTCTGAAAGCATGTTCATtctacaaataataaataatgatggaactaattatatacatatagtgAATTGTTTTAGGGCAGCAAATAGATTTTCTTGTTAATGCATGTTATAGTTTAAACCATTATCTGGATTTTAAGCAAAAAACAAGCCTGTTTGACAAAAGCAGTGGACCTTCATCCTGTTTGTGGTGTGTAATTCTCCAGTTCTAATGTTTATACACATCAGTTATGCATTTCCTGAGTTGTATAATGAGTCGTTCAGTATTTTGACTTAGGTAAGAGTTTAAGATGCACTGTTTGtcaagctaaaaaaatatatatacatattcttATGGTATATTCAATAAAGAAATCTTTTCAGTATCTTGGAGAACTTCAAAAGTCCAAAGTGATAAGTCTCATAGTAACGTTCCTTAGTTATTCTCTTGTAAAACATTGGTTCCATGGCTTTAATGTTCTAGAATTGTAAGTAAATTGAATAACACTTTAACAAGTGTATTTATCTACACCTGCAGTATAGAAGACACCAGACATGTGGTCTTAGATCTGTCTAGGTGAGATCTGCTtgactgtaaataataatgcaaaatgtTTACATGTATGTTGAAATGTGAAATTTTAATAAATGGTTTTGCTTGTT

Function

GO:

id name namespace
GO:0006974 cellular response to DNA damage stimulus biological_process
GO:0070925 organelle assembly biological_process
GO:0033554 cellular response to stress biological_process
GO:0000226 microtubule cytoskeleton organization biological_process
GO:0006259 DNA metabolic process biological_process
GO:0006281 DNA repair biological_process

KEGG:

id description
ko03460 Fanconi anemia pathway

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007259513.3 True 3393 mRNA 0.44 10 64694962 64702540

Neighbor

gene id symbol gene type direction distance location
kiaa1211 kiaa1211 coding upstream 21451 64629173 ~ 64673511 (+)
chst14 chst14,LOC107665414 coding upstream 92324 64591657 ~ 64602638 (+)
exoc1 exoc1,LOC107683916,LOC107555758 coding upstream 105344 64572370 ~ 64589618 (+)
LOC103022915 NA coding upstream 276519 64412269 ~ 64418443 (+)
tmem165 tmem165,LOC107665411,LOC107755243,LOC107601909,LOC107573988,LOC107683960 coding upstream 283261 64399672 ~ 64411701 (+)
LOC103037884 paics,LOC108415209,LOC107555752,LOC107556158,LOC108257759,LOC107721365,LOC107683924,LOC107665310,LOC107737306 coding downstream 9633 64712173 ~ 64728301 (+)
LOC103042444 NA coding downstream 29119 64731659 ~ 64742240 (+)
LOC103042125 NA coding downstream 40114 64742654 ~ 64749709 (+)
LOC103041822 NA coding downstream 100684 64803224 ~ 64810333 (+)
LOC111190912 NA coding downstream 124155 64826695 ~ 64834077 (+)
G30617 cep135 non-coding upstream 72624 64615427 ~ 64622338 (+)
G30615 cep135 non-coding upstream 80854 64612960 ~ 64614108 (+)
G30589 NA non-coding upstream 148840 64544303 ~ 64546122 (+)
G30588 LOC107659282 non-coding upstream 151541 64542115 ~ 64543421 (+)
G30587 NA non-coding upstream 164799 64529930 ~ 64530163 (+)
G30640 ppat,LOC106560282,LOC107683925 non-coding downstream 6783 64709323 ~ 64719038 (+)
G30646 NA non-coding downstream 18415 64720955 ~ 64832837 (+)
G30644 NA non-coding downstream 27524 64730064 ~ 64822659 (+)
G30652 NA non-coding downstream 49693 64752233 ~ 64774978 (+)
G30653 NA non-coding downstream 50986 64753526 ~ 64755851 (+)
kit kit other upstream 425267 64231244 ~ 64269695 (+)
G30362 NA other upstream 1349269 63335734 ~ 63345693 (+)
LOC103035278 NA other upstream 1763829 62926018 ~ 62931133 (+)
LOC103045797 NA other upstream 1841674 62821743 ~ 62853288 (+)
LOC103046322 clic5b,LOC108411995,LOC107678823,LOC107726746,LOC105897798,LOC103355727,LOC108258161,LOC107743284 other upstream 2758879 61926080 ~ 61936083 (+)
LOC103033886 LOC108257901,LOC105910874 other downstream 319879 65022419 ~ 65046978 (+)
LOC103031672 NA other downstream 375240 65077780 ~ 65086780 (+)
trnad-guc_9 NA other downstream 395962 65098502 ~ 65098573 (+)
trnad-guc_10 NA other downstream 396751 65099291 ~ 65099362 (+)
G31000 NA other downstream 1126241 65828781 ~ 65837365 (+)

Expression


Co-expression Network