chst14 (chst14,LOC107665414)


Basic Information

Item Value
gene id chst14
gene name chst14,LOC107665414
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 64591657 ~ 64602638 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007259517.3
GTTTGGTTTTGAatggagcccctaaggtgacatcatgttaaaaaaaaataatggtgtggccacgacttattaaggtgtgggaacaagcTAATTAAGCCATATAAATCGTCTGTGCACTTTAATTATCTCTTACCTGTGCCTTAATTTTCTTATACCTGTGCCAAATGAATGATCTCGTTCCACAATTTAATAAGTCATCCCCACAAATAATTAACTCGTTTCAGGCCTTAATAAGTCGTCTATACTaattaattatctcattcccatgccttaataagtcttACCCACTAATTAATTATCTTAttccacaccttaataagttgtcCCCACAAATgaattatctcgttcccacgcctttACAATTCCCACTTATTACAATTATATCGTTCTtacaccttaataagtcgtcCCTACAAGTGAATTCTCtggttcccacgccttaataagtagTACACACAAATGAATTAactcgttcccacaccttaataagctGCGTTCAGACattctcatttattttcacGTCACGTGATGTCACTTTAGGAGCCTGTAGTTTTGTTTgtatacttttaaaacaatCATAATTTATCAGTTGTGCTCCAGAACAAATCATATAAAAAGAGAGTagcataacatattataaagacattttatagtatacacatttaaaacagggaTTCTGTGCTTCTTCTTAACCTGACAGTTAAAAACAGAGCCTGCCTCTTTTTCTCCGCCCCCCGTGTAATGAACTACGTTTCCCATGATGCAGCGCGCCCTGTACTTTTTTCTTCACTCTTTTTTGGGGGAGAAGAGAGAAGTTGGTGTTTCGCTGGGAGGAGGCGAAGGAGGAGAGTTATGGGTCTGCGGTAAATCCGGAGACACTCCTTATTAAACTCTGGGAACAAAGAGCGCAGAGCTccgtgtctctccctctctctgtctctctctctctctcagcccgGGGTCGGGGTCGGTCATGCCGCCTCGGAGGCCGGACGGCGGGCTGAAGCGGGTCAGCGTGTCGCGGAGCTCCGCTCGACACTCGGCCGTGCTGCCCTCCGTGCTCACTTTCGCCGTGATCGTGGCGTCCGGcggcctgctgctgctgatcgAGAAGGGCATGCTGAACGGAGTGGACACGCCGCCGCCGCTCGCGGGCGGCCGGAGAGCGGACTTCTTCTCCGGCAGGCAGCAGGAGCCCGGTGCGGACGTGGAGTCACAGTTTTTGCAGGAGATACGCAACCGCACCATAAGGGCCATGTGCGGCCAGAAGAACACGGCTCGCAGCGTGTGGTCCCTAACCCCCCTGCAGAGGAAGACCCTGCTGCAGCACATCCTGGTGAATGACGAGCATCGTTTCCTCTACTGCTACGTGCCCAAGGTGGCTTGTTCCAACTGGAAGCGCGTGCTGAAGGTGCTGAGCGGTTCCCTGGCGCACGTGGACGTCAAGGTGAAGATGAATCATCGTGCCGACCTTGTCTTCCTTTCTGATCTTCAGCCAGAGGAGATCCGGCACCGGCTGCGGCACTACTTCAAGTTCACGTTCGTGCGTGACCCCATGGCGCGCCTGCTCTCAGCCTACCGCAACAAGTTTGGGGAAATTGAGTCTTACCAGCGCAAGTACGGTGCGGAGATTGTGCGCAGGTACCGTAAGACCCGCACGAAGGACAAGAGGACGATAGCAGGTGACGATGTGACGTTCACGGAGTTTGTGCGCTACCTGCTGGATGAGGACGTGGAGCGCATGAATGAACACTGGATGCCCATGTACAACCTCTGCCAGCCATGTGCGGTGGAATACGACTTTATAGGGTCGTACGAGCGTCTGGAGAGCGACGCAGCGTACGTTCTGGAGCGCGTGGGGGCGCCGGCACACGTGCACTTCCCTGAACGCCAAACGTGGTACAAGCCTGTTACAAAGGAAACTCTTCATTACTACCTGTGCAGCGTGCCTCAGAAGCTGCTGCGAGAACTTCTGCCCAAATACATCCTAGACTTTTCCCTCTTCGGATATCCGCTGCCCAACATAACCACTGAGTACTGTCGGCACTAGCAAAGACTAGACCTGGAAACTTTTCACTTGTACAGTTCTGTATTAcaccttttaactttttttacactatgaaaattataatgttttggtagttttttactctttttttaaatattatattgtacagATTTGGAACCGGTTTTATTACAACAAATCAGAGCTACAATATTTAATTTGTAACCACTATGTAGAACTGGAATTACtgcacatctgtagaaggaggcaATGTTActaatgtgaaatatttttatgtatatcaTAAGCAGTTACATTGTCTTATATATGGGTGTTGAATATATTGTGCTGGGCACAAAAACTGATTTTATAGAAGATGAAGATCTGGCTTGTGACTTGTGAATTGTATACATTAGCTGCCACTTGCAGGACAAGAGGAAAAAGAGCAAACAAGGAGTAGATATTTCAGCACAAAACACTCGATTACCTAAGCAGCCTAAGGTTCCCTTTATTGagctaaatagctagctaagctaactcttTAATGCATACCTTGTTTTGCGaaggtaatgtaatgtaatttcaagAATAATTAGCTTGGTCTGGTTTAAGTTTCAGGTTTACAGTCAGACCTAGGATGTTTTGGTGATGCTGGCTTTTTACAAAAAGTAGTTTTTATGCTCAAGGTCAGTTTgaacaaagaaaaaatcaatattattatatatttatgcttGTTGCTTGTCTGCATATGTGGTTTCTTTGTTCAAAAAAGTCAGATCATCACTTACTTGATGAGTTATATTGATTCCAtgcattttcttgtttttatctCTAGAATTTTTGAACCAGAGTTCAAGGCAAATTTGATCataatacacaatattattttttctgcatATTGTGGCTTTCATCAGTGCTTTAAAGAACACTGAGCAACTGTACATTTCTACACAAGAGTGTAATTTTCACTGTTGTAGGTATGGGGTAGTATATGGATAGTAGTTTTATAATCTGCCagtactgttgtgttttgtctgtgtgttgCAGAAATATTGTACATCAtgaatgtctttaaatatcttcattttttttttttttaccatatcactCACCCCCCTTTCTTCAGTGGGTGTTAGTTAATTTAGTGTTCACTACTTTATGGGTTTAATCAAGTCTTTATAGGCAAGTCAGTTCACTTGCTGGCTATCTTTGCAATGCAGCCAGGAGCTTATATCCCCTCATGCAAAATTACCatttaaacaacacattttACATTGCTGATAAAACCTGCCAAAAATCGAATGAACAGTTTGTGACGTTTGGCTCAAACATGGACAAGAGCTGTGACTTTTAGGCGTGTTATAGCTGCTGCgcctgcacagatctccacagcaAGGATCCTCTACACacaagcagcaagctgattgacTTTATCCTTAATCGAGTACCTTGATTAGCGTTACGAAAACTCCCATTTGTAAAACTGTCAGTGGCTTGTCTCCTCTTTAAAAAGGTCTCtggtttattctaatattaaatCTAAAGAGTTAACCATAGCAATGAAATGGGCCAGACTTACTAATTAGCTATCCTAACCACATACTTTGGTGCATGTTCTAATTTTTTGGTGCTTGCACCTTTCTGGACTACAGTTAGACAATCAGCAGTAAGGGGAAGCACAAAGCTAAAAATTAACAATCATTTAGTGAACAATCAAATACGCAAGtgttgaagttttttttcttaattttaagtTCTTAATTATGAGCACTAAAGACAGCATCTCACCATTTCGAGGGTAcagaagatagatagaagaagATAGAAGATGCTGTAACTTTGTTTACTAATGTGTTTTTGAGGAAAGATTTTCGCAACAACCAAATACCAATCTTAGGTTCCTTTTTGAAGTTCCCCAGAATTTTAATGTTGAGACTTTTAAAGGGTCCCTAAGGGTTCATAATGtggtcctgaagcagcattTTAAGATATCCTTAGAGATTGGCCCAAAGAAAATAGGGAGGTCAAGTTGATGGGAtgttaaaaacagaatttaaaaacagggtcagacatttctgaaatctttgtcaattttaaaatgacagttaTAATGTTACaatgtccattttttttatttatttagggttTCTTTTAAGGTTTGAATTTTTTATCAAGGTGACCTTTCTTGTGATTAAACACTACTGGACTTTCCCGAAGCATTTTTATACAAAGACAATGGTTAAATGATGGAACAAAACGAACACTGTTCTGgttactgtgcctttaagagtatgtatgtaaatattgtaagtcgctttgaaAAAAAGAATCTGCCACATGTAATGTAAATGACCAGTGTTATGACTGACTGTCATGTATCATTCCTTATTCAAAAGCAGTCCAGGTTTCTTATGTATTTAGTGTGAATAAGCGGGATAACTGCTgtacattaaatgtatttaaatcattttttatttttgtgacaTGACAAAATTACCAAATTTGCACCACAGGGACCGGGGGTGTACATACTATATCAGACTCTGTTTCCACAGTGTTGACCTATTATATTTTCctattaaatctattaaatacaaggct

Function

symbol description
chst14 Predicted to enable N-acetylgalactosamine 4-O-sulfotransferase activity. Predicted to be involved in dermatan sulfate proteoglycan metabolic process. Predicted to act upstream of or within carbohydrate biosynthetic process. Predicted to be located in Golgi membrane. Predicted to be integral component of membrane. Is expressed in head; midbrain hindbrain boundary; notochord; pectoral fin; and spinal cord. Human ortholog(s) of this gene implicated in Ehlers-Danlos syndrome musculocontractural type 1. Orthologous to human CHST14 (carbohydrate sulfotransferase 14).

NR:

description
carbohydrate sulfotransferase 14-like

GO:

id name namespace
GO:0050655 dermatan sulfate proteoglycan metabolic process biological_process
GO:0016051 carbohydrate biosynthetic process biological_process
GO:0000139 Golgi membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0001537 N-acetylgalactosamine 4-O-sulfotransferase activity molecular_function

KEGG:

id description
K08105 D4ST1; dermatan 4-sulfotransferase 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007259517.3 True 4606 mRNA 0.41 2 64591657 64602638

Neighbor

gene id symbol gene type direction distance location
exoc1 exoc1,LOC107683916,LOC107555758 coding upstream 2039 64572370 ~ 64589618 (+)
LOC103022915 NA coding upstream 173214 64412269 ~ 64418443 (+)
tmem165 tmem165,LOC107665411,LOC107755243,LOC107601909,LOC107573988,LOC107683960 coding upstream 179956 64399672 ~ 64411701 (+)
srd5a3 NA coding upstream 194028 64394209 ~ 64397629 (+)
pdgfra pdgfra coding upstream 447333 64111719 ~ 64144324 (+)
kiaa1211 kiaa1211 coding downstream 26535 64629173 ~ 64673511 (+)
LOC103038194 NA coding downstream 92324 64694962 ~ 64702540 (+)
LOC103037884 paics,LOC108415209,LOC107555752,LOC107556158,LOC108257759,LOC107721365,LOC107683924,LOC107665310,LOC107737306 coding downstream 109535 64712173 ~ 64728301 (+)
LOC103042444 NA coding downstream 129021 64731659 ~ 64742240 (+)
LOC103042125 NA coding downstream 140016 64742654 ~ 64749709 (+)
G30589 NA non-coding upstream 45535 64544303 ~ 64546122 (+)
G30588 LOC107659282 non-coding upstream 48236 64542115 ~ 64543421 (+)
G30587 NA non-coding upstream 61494 64529930 ~ 64530163 (+)
G30543 NA non-coding upstream 135225 64454774 ~ 64456432 (+)
G30540 NA non-coding upstream 166255 64423509 ~ 64425402 (+)
G30615 cep135 non-coding downstream 10322 64612960 ~ 64614108 (+)
G30617 cep135 non-coding downstream 12789 64615427 ~ 64622338 (+)
G30640 ppat,LOC106560282,LOC107683925 non-coding downstream 106685 64709323 ~ 64719038 (+)
G30646 NA non-coding downstream 118317 64720955 ~ 64832837 (+)
G30644 NA non-coding downstream 127426 64730064 ~ 64822659 (+)
kit kit other upstream 321962 64231244 ~ 64269695 (+)
G30362 NA other upstream 1245964 63335734 ~ 63345693 (+)
LOC103035278 NA other upstream 1660524 62926018 ~ 62931133 (+)
LOC103045797 NA other upstream 1738369 62821743 ~ 62853288 (+)
LOC103046322 clic5b,LOC108411995,LOC107678823,LOC107726746,LOC105897798,LOC103355727,LOC108258161,LOC107743284 other upstream 2655574 61926080 ~ 61936083 (+)
LOC103033886 LOC108257901,LOC105910874 other downstream 419781 65022419 ~ 65046978 (+)
LOC103031672 NA other downstream 475142 65077780 ~ 65086780 (+)
trnad-guc_9 NA other downstream 495864 65098502 ~ 65098573 (+)
trnad-guc_10 NA other downstream 496653 65099291 ~ 65099362 (+)
G31000 NA other downstream 1226143 65828781 ~ 65837365 (+)

Expression


Co-expression Network