tmem200a (tmem200a,LOC107697489,LOC107570881,LOC107653146,LOC107560495)


Basic Information

Item Value
gene id tmem200a
gene name tmem200a,LOC107697489,LOC107570881,LOC107653146,LOC107560495
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 54163102 ~ 54190321 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007259686.3
agagagagagagagagagagagagagagaggattgaCTGGGAGGACGCTGCGCGCGGAGCTGGTGTTTGGAGACAGTACTGGAGTAGTGAGGGAGAGCGTTGTGGATCAGGAGGAGGAGATGAGCGCTTCACTCCGCTCTTCAGCTATAACTCTGGACCCGCTGCTGGACTCACGGAGCGCCCGGGAGGAGTAACGTTAATCATCGCTGTGGCGCGCGGGGGGCGCGCGCGTGGAGATGGAGAGCGGAGCCGCGCGCGCGCTGCTCGGCGAGCCTGCGCCCCGTGGATCTACTGCACCTGTACAAAGTTCCAGAAGCGCGCGGGAACATGCGTGATGGAGCGATAGGAGCTCGAGGCTTTGCGCTCAGAGAGgCCTGTGTGTCAGTTTAAGCAATGATTGCAACTGGAGGAGTGATCACAGGCCTCGCGGCCTTGAAGAGGCAAGACTCTTCCCGCTCGCAGCATCATTTGCCCATCCAGAGTCCATCCGCTCAACCTGAGAAGAAGCGACAGAAGCGTAAACCTCGCACAGATGTGGTTGTGGTACGTGGAAAAATACGACTGTATTCTGCCTCTGGCTTCTTTTTGGTCCTGGGCGTTCTGATCCTTATGGTGGGCATTGCCATGGCTGTATTGGGCTATTGGCCTCACAAGGACCATCAGAGGTCACTAGAGACTAAGCTCTCTAGCAACGACACACAGTTGGCGGGGGAACAGGTGGGAACGGTAGCACAGTTTTTCGAGCAACACCTGCATTCAGAGAAAATGAAAATGCTCGGACCCTTCACAATGGGCATTGggatatttatctttatctgtgCTAATGCAATCTTACATGAGAACAGAGACCGAGAAACTAAGGTTATCCACATGCGGGACATGTACTCAACTGTCATAGACATCCATAGCTTGAGGATAAAGGAGCAGAAGTGTATGAACGGGGCCTACATGGGGCCCTACATGGACCATGAGATCCGAAACTTTGGTTATGAGAGCCAGTATGCTTCACGGCTAGCTGCCAACACGCTAATGTCATTTTCTGGCTTTGGCGGAGATGTTCGACTCTCCCGGCGCACCAGCTCGGCTGAGGACGAGGAAGGTCTAATGGGGGAGGCCAAAGGTGGCTCGAGCTTGTTGTCACCTGGCTATAGGGAACGTGCTGGCTCTATCTTCGGGTTCCAGCCGGAGGGAATTCGTCACTGGGAAGACAAACGTAGAGACCTGAAGAAGTGCCAGACACGGTCCATCGTCTCATCCTCCATTAGCGCTTTCACTCTCCCAGTGATCAAGCTCAACAACTGTGTCATCGATGAACCTGATATCGACAACATCACTGAAGATTCTGAGCAGCTGCGGGACCGGTCAAGACCTCCATCCATGGAGTCCTTGGCTGTCCCTGTGCCAGATATTTCCAAAGCCTTTAAGCCCCCTGGTACCTTGCTGCTCCGGAGCAACTCTGCTATAGAATGCCCCACATCTGGTTCCTCACAGTCCTCCCTGTCCCCTGGATCCACCAGCGGCTGCTTTCTGTCTCCTGGGGCAGCCAGGAAAGACTTTGGATCCAATAACTCTCTGCACATGTTGTCTGCTCACTCTAAGTCTCTGGACCTGGAGCGTGGTCACACCACGCTAACTGTCCAGCCAGAACAGCGCAAGCACCCCAGCTGGCCCAGGCTGGACCGCAGCAACAGTAAAGGCTATACCAAACTGGAGAATAAAGAAGACCCGATGGACAGGCTGCTGGTTCCTCCGGTGGCTATCAAAAGGGACTACACCAAAAAGGAGAAGCTGCTCATGATCTCCAGATCACACAACAATCTGAGTTTTGAACACGATGAGTTTATGAGCAGCACTCTAAAAAGAGGGACTTCTGAGACCAGATTTTAATACGGACCTAAACTGaggccttacacacacacatccatgctccaacacacacacacacacacacacacacacattcgcaCAATGTCACAGTGGCTACAACATTTTGCAATACATGAATCTACCATTCTCTGATATTCCCGCAGTGATTATGTGAACTCATGAACACTCAAGTCCCACGGACTGCAAGCTCAGGTGGTCATTCTGATCGACACAGACATAACAGATTGTTTCTGAAAACAAATTATTGAGTTGTGAAATTTTTATCCCCACATAGCGAGTAACCAGAAGTTTATAGTCAGGATATCCAGCAAAGCAGAGGATGAAGCAGTGTAAATAGACAGCAGTGTACTGTGTTTCTGTTGTCTTTGCTAACCGTTCAGACAGgacctgttgtttgttttgAGTAGCGTGTGTGCGTGCATTGTTGTACCAGAGCAGGACAGTTATTTTGCTATgaggttttaaataatttattgttcagAAACACATTGCTATTTTTGAAGTCATCAATGTATTATTTATCTGTTTCTCAGAATAAAAGTAAACCTTTCACATAA

Function

symbol description
tmem200a Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in forebrain; midbrain; and retinal ganglion cell layer. Orthologous to human TMEM200A (transmembrane protein 200A).

NR:

description
PREDICTED: transmembrane protein 200A

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007259686.3 True 2444 mRNA 0.50 3 54163102 54190321

Neighbor

gene id symbol gene type direction distance location
med23 med23 coding downstream 447194 53689367 ~ 53715908 (-)
LOC103035653 flrt2,LOC108444111,LOC107752686,LOC107706955,LOC107664820,LOC107570088,LOC107701229 coding downstream 753033 53333965 ~ 53410069 (-)
glrx5 glrx5,LOC106571612 coding downstream 1397258 52760053 ~ 52765844 (-)
LOC107197707 c25h14orf132,LOC108413331,LOC107549545,LOC107582175 coding downstream 1446035 52670111 ~ 52717067 (-)
LOC103041285 LOC108413330 coding downstream 1521518 52640295 ~ 52641584 (-)
tab2 tab2 coding upstream 277696 54468017 ~ 54524305 (-)
nus1 nus1,LOC107736830 coding upstream 451694 54642015 ~ 54652464 (-)
LOC103032288 LOC108424430 coding upstream 465083 54655404 ~ 54659026 (-)
dcbld1 NA coding upstream 504862 54695183 ~ 54732688 (-)
vgll2 vgll2 coding upstream 581954 54772275 ~ 54781380 (-)
G28110 NA non-coding downstream 113703 53980469 ~ 54049399 (-)
G28075 NA non-coding downstream 219842 53866055 ~ 53943260 (-)
G28093 NA non-coding downstream 281923 53878118 ~ 53881179 (-)
G28074 NA non-coding downstream 324889 53793218 ~ 53838213 (-)
G28082 NA non-coding downstream 329858 53830473 ~ 53833244 (-)
G28133 NA non-coding upstream 43816 54234137 ~ 54234756 (-)
G28134 NA non-coding upstream 43910 54234231 ~ 54238171 (-)
LOC103031114 NA non-coding upstream 68590 54258911 ~ 54265628 (-)
G28140 NA non-coding upstream 145528 54335849 ~ 54365033 (-)
G28145 NA non-coding upstream 210961 54401282 ~ 54403817 (-)
LOC103040805 NA other downstream 107405 54049795 ~ 54055697 (-)
akap7 NA other downstream 255690 53742880 ~ 53907412 (-)
trnal-cag NA other downstream 540744 53622071 ~ 53622358 (-)
G27821 LOC108413844,LOC108411774,LOC108411773,LOC108417426,LOC108417958 other downstream 1313196 52786472 ~ 52849906 (-)
LOC103040973 NA other downstream 1841182 52293880 ~ 52321920 (-)
LOC111188920 slc35f1,LOC107549682,LOC107743307,LOC107697151,LOC107678858,LOC107727669,LOC106571386 other upstream 366567 54556888 ~ 54623840 (-)
LOC103023935 snx9b,LOC103024560,LOC108424479,LOC108424433,LOC107603096,LOC107549701,LOC108257753,LOC107697150 other upstream 1075770 55266091 ~ 55314179 (-)
mixl1 lin9,LOC107678835,LOC107726751,LOC107697095 other upstream 1241760 55432081 ~ 55444669 (-)
LOC111189318 NA other upstream 1309579 55499900 ~ 55501760 (-)
G28501 nrbp1,LOC103372645,LOC105015343,LOC106537236,LOC102314540 other upstream 1412549 55602870 ~ 55606886 (-)

Expression


Co-expression Network