LOC103035909


Basic Information

Item Value
gene id LOC103035909
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 39750022 ~ 39751990 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007259844.3
AGTGGTCCTTAACGGAGCTCAAACTAATGATATATGTTACTAAAAAATTCCACAATGTGTATTGTAAAACAATACCAATGTTATGTTGCATTTTAATAATGAAGTGCATTGTCATAAAAAATTCTATTAATTTCAGATTGATCACAAGAATGACACAACATGGGTTACAAAACGACCTTCAACCAAACTGTGATGATGGGAAACCCTCCACTCTGTTATGAATTTCTGAACAGTTCATGTCATGTCAGCATTGTTTATCCGAAAGAAGCTCAATATtcactttacattttatttggatttgTATCCCTTTTTACATTTCTGGGGAATTTGTTGGTGATCGTAACTATCATTCACTTCAAGCAGCTGCACACACCAACTAactacctcattctctctctggcCGTTGCTGACCTGTGCATAGGAGCGATTGTGATGCCTCCCAGCATGCTACGCTCTGTGGAGACTTGCTGGTATTTGGGAAGCATATTCTGTAAAATACACACCAGTCTTGATGTTACAATGTCTACTGCTTCAATTCTAAATCTGTGTATAATTTCTGTAGATCGATATTATGCTGTGTGTCACCCCCTTCTCTATCACAGTAAAATGACTCCTAATGCCACTCTACTAATGATATTTGTATGCTGGACCATTTCTGGTTTTGTGGGATTTGGAATGATCTTTCTTGAGCTTGGTATTTTGGGAGTTGAAGATTTTTACTACAGTAATGTTGCCTGTGAGGGCGGCTGTTTTCTGTTTCTAAGTAAAACAGCAAGTGCTGTATTCACAATGCTCTGCTTCTACATTCCAGCTGTGGTCATGATCagtttatatatgaaaatatttcaCATTGCTAAAAGACAAGCTCGACTAATACAAAATGCGCAAATCTTGTCTTCCCATCGACATACTTCAGTGGGTAAGACTGAGATAAAAGCTACTAAAACTTTAGCCATTGTCATaggtgtttttctgttgttttggaCACCCTTTTTTGTCTGTGCCTTAATTGATCCCTTTATTGGATACACAGTCCCAATAGTTTTGTTTGACTTCTTTACGTGGGTGGGATATGTCAATTCCACTTGTAATCCTATTGTGTACGCCTTATTTTATAGCTGGTTTAGAAAATCCTTCAGAATTATATTGGTGGGCAAAATATTTCAGCCCAATTCATCTAGAACTAAGTTATTTTGATTCTaagatacaaatacaaatatcatGAGCATTTAAATAGTCAACTAAACATTTTACTGCATATATTGAAGTCATTTACTACTGTCTCATAAAAAAGTCTATAGTCCTGTTATCATGGTGTTCACTGAAATGACAGTGTTCAACAAGTGGCTCAAGACTTTTATTACGTCTATATCATCTAAAAGTCTTGTGGTCATGGATGTCGGGCTTTTTTTTAGGCTATCATGGACATTAAGGACTAGTGTTTTCTCTAACTGTGTGGAAGCCTCTTTTTTTTACCTATAACATTGTGTGCATTTCTTGTATACCCAGCATAGCtattttcttatcttatttttatgtGTTGACTCTCTCTACCTATACTAATTTTGGGATGATTTCAAATAAATATGTCTTCCTTATTtaccagttttttttattttgacctGCTATGTGAATGTAGCACATTACATGCCATGCTATTTCAATTATACTGTACCTGATCTGCAGCACCAGCTGCTGACAAACTCTCTGAGCAGTTGTTTAGGGCCACAGCCACTAGAGGTGGCCACATGATCAGAGTGTGCTTTGCTTTTTGACCCtctctttatttaaacatatactatactataatgtaCTGACATACACATTTAAACCTACATATTAGTACAGaggtataaaataaacaatagaatTAA

Function

GO:

id name namespace
GO:0007165 signal transduction biological_process
GO:0016020 membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG:

id description
K05051 TAAR; trace amine associated receptor

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007259844.3 True 1874 mRNA 0.36 2 39750022 39751990

Neighbor

gene id symbol gene type direction distance location
LOC111191823 NA coding downstream 15054 39733847 ~ 39734968 (-)
LOC111191820 NA coding downstream 21437 39727514 ~ 39728585 (-)
LOC111194344 NA coding downstream 29300 39718689 ~ 39720722 (-)
LOC103035599 LOC103035599 coding downstream 44178 39704128 ~ 39705844 (-)
LOC103035296 LOC108432792 coding downstream 49316 39699292 ~ 39700706 (-)
LOC103031565 NA coding upstream 3487 39755477 ~ 39756680 (-)
LOC103031261 NA coding upstream 13465 39765455 ~ 39766663 (-)
LOC103036329 NA coding upstream 22612 39774602 ~ 39777033 (-)
LOC111196293 NA coding upstream 41726 39793716 ~ 39795025 (-)
LOC103034967 LOC103034967 coding upstream 44408 39796398 ~ 39798840 (-)
G24964 NA non-coding downstream 17543 39724455 ~ 39732479 (-)
LOC111196215 NA non-coding downstream 225748 39514469 ~ 39524274 (-)
G24911 NA non-coding downstream 250556 39499043 ~ 39499466 (-)
LOC111196213 NA non-coding downstream 269678 39472824 ~ 39480344 (-)
LOC111191798 NA non-coding downstream 540757 39207480 ~ 39209265 (-)
G24992 NA non-coding upstream 67286 39819276 ~ 39825981 (-)
G24997 NA non-coding upstream 93383 39845373 ~ 39848209 (-)
G25128 NA non-coding upstream 631611 40383601 ~ 40421173 (-)
G25174 NA non-coding upstream 973809 40725799 ~ 40726362 (-)
G25173 NA non-coding upstream 974495 40726485 ~ 40728663 (-)
G24903 NA other downstream 291833 39455236 ~ 39458189 (-)
LOC103043888 LOC108432835 other downstream 403106 39273635 ~ 39346916 (-)
batf batf,LOC107697118 other downstream 425320 39309726 ~ 39324702 (-)
smim8 smim8 other downstream 823029 38925623 ~ 38926993 (-)
LOC103024598 LOC108411439 other downstream 827105 38887626 ~ 38922917 (-)
LOC111196341 NA other upstream 423272 40175262 ~ 40230868 (-)
G25265 slco5a1 other upstream 1462431 41214421 ~ 41218829 (-)
arhgap11a NA other upstream 1684051 41436041 ~ 41442494 (-)
LOC111196508 NA other upstream 2104105 41856095 ~ 41865844 (-)
LOC111196586 LOC108262118 other upstream 2117034 41869024 ~ 41880424 (-)

Expression


Co-expression Network