LOC103036628


Basic Information

Item Value
gene id LOC103036628
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 39694653 ~ 39697487 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007259846.2
AGAATGCAACAAGCCATTCTGAGgattttgtcaaaatgaacttgagtctTCAGGGATCGGTTGAGGTGGTGTCCTTTTGTTTTGAGGGTCTAAATGGGTCGTGTCCACGTACCGTCTACTCCTCTGCCATGCGTGTGCCCCTATACATCCTCTTTGCATTGATTGTTTTTCTGATAGTCAGTGGCAACCTCTTGGTCATCTGCATCATACTGTTATCCCAACACCTGCAAATGGCCACTAATTGCCTCATCCTCTCCCTGTCTGTGGCTGGACTGCTCTTAGGTGGGCTTGTGCTGCCTCCAAGCATGGTGCGCTCTCTGGAGACTTGCTGGTACTTTGGTGAGCACTTCTGTGATTTCCATTCCACTGCGGACATTATTTTGTGTAATACCACAGTGTGGCACCTTACCTTTATTTCCGTTGACCGTTACCTGGCCGTGTGCCACCCAGTGCACTACCAGAACCGAGTGATCAAGAGGCTCTATATTGTTATGATACTGACCAGTTGGGGTCTCTCCGCAGTTTTCGGTTTTGCCATCACACTTTCAAATCCAGAAGTTTTAATCAAAGATGATCCCCAAAAGACATGTATTGGGGAATGTCTTGCTCTGCACGCCAAAGAAATTGGGGTGGAATATTCCATCATTTTCTTCTTCATGCCCGTGTCTATAATAGTGAGTGTTTATAGTAAGGTTTATTGTGTAGCACAAAGACACTCCAGAGCAATTCACAGTTACGCTCACAACCCTAAAGCCATGCCAACTTCTAAAGATCTCAAGGCTACTAAGACACTTGGTATAGTGATTGGAAATTTTCTTTTCTGTTGGACCCCATTTTTCATGTGCAATATCATGGACCCTATATTGAACCACTCAATACCATCAGTTTTGTATGAAGTACTAATGTGGTTTTCTTACTTGAACTCCCTGTTTAATCCTTtaatatatgcatttttttaccGCTGGTTCAGAGAAACCGCAAAGGGCTTGTTCAACAAACTGTTTAAGCAGATATAATTTGGATTTTGGATAAGGGTTAATTGTCTTGCATATGCATTCATTTTTGCTTTAATGACTGTTTGCTTATTGTCTACCTGACAGAGCTATGTGCTCTATGCatcaaaacaatatatattccTCATATCACATACTGTGCGTGACTGTAGACCAGTAGATGGAGTGGCACTACTTTTTTCTAGGACAAATAATACAGCTTGTGTACAAAAgcattactgattactgatacTGATTCTAAAGGTAAGTCTAAGTGTAACATATATTCTGCTTATAGGGTGTAAATACCTTTCTTTTGGTCAGAGATTGCATTCAGAGTTTAGTCAGCTAGTACATGTCTCCAtacaacattatatatatatatatgtaaatacattattcgaaaatataatatttaaaaaactactATACCTACTATATGCACAAAAATATTGAGGAACTTCTTAATCGTTTAATTTGTGTTTCATtcagatttttcattttaagtggAAGTGATTAATAAACAAGGAAACCAGTCAGAAACTGTCAGACTACATTAAGtcatatagttatatatatgtatgataCATAGTTTTTAAGGAGCATAGTACAAAAAGTCATCAATGCTCTCATGACTTTATAATGGACATAGTTCCAAATATTGCAAAGAGGTTATCTTCTCCatacaaataattattatttataatactatatataactcacctgttcttttttttcttttaatatttttttccttgtaaatgtaatattaaggTAATAAAGTTAAACAGgaacatgc

Function

GO:

id name namespace
GO:0007165 signal transduction biological_process
GO:0016020 membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007259846.2 True 1791 mRNA 0.37 2 39694653 39697487

Neighbor

gene id symbol gene type direction distance location
LOC103032515 NA coding upstream 24838 39668510 ~ 39669815 (+)
LOC103042020 LOC108432804 coding upstream 266882 39412683 ~ 39427771 (+)
LOC103043278 LOC103043278,LOC108432833 coding upstream 326360 39365807 ~ 39368293 (+)
LOC103045608 LOC108411441 coding upstream 472417 39214181 ~ 39222236 (+)
rars2 rars2 coding upstream 522698 39155626 ~ 39171955 (+)
c3h6orf58 NA coding downstream 287658 39985145 ~ 39992197 (+)
cspp1 NA coding downstream 613454 40310941 ~ 40319844 (+)
prex2 prex2,LOC107741010,LOC107686687,LOC107758281 coding downstream 808929 40506416 ~ 40726249 (+)
c3h8orf34 cunh8orf34,LOC103047203,LOC106909367 coding downstream 1033900 40731387 ~ 40903436 (+)
sulf1 sulf1 coding downstream 1224985 40922472 ~ 41115241 (+)
G24837 NA non-coding upstream 41634 39648388 ~ 39653019 (+)
G24834 LOC108432800 non-coding upstream 56049 39637403 ~ 39638604 (+)
G24833 NA non-coding upstream 67960 39621853 ~ 39626693 (+)
G24815 NA non-coding upstream 164390 39526486 ~ 39530263 (+)
G24796 rad51 non-coding upstream 255651 39436982 ~ 39439002 (+)
G24978 NA non-coding downstream 147883 39845370 ~ 39848248 (+)
G24981 NA non-coding downstream 149322 39846809 ~ 39847260 (+)
G25021 NA non-coding downstream 295214 39992701 ~ 39994485 (+)
G25024 themis non-coding downstream 306686 40004173 ~ 40013801 (+)
G25142 NA non-coding downstream 797529 40495016 ~ 40495230 (+)
eif2b2 eif2b2,LOC107697194,LOC107685362 other upstream 296775 39388867 ~ 39397878 (+)
LOC111196173 NA other upstream 353682 39325083 ~ 39340971 (+)
G24719 NA other upstream 648872 39045170 ~ 39045781 (+)
G24583 NA other upstream 747431 38939357 ~ 38947222 (+)
G24594 smim8 other upstream 767671 38925696 ~ 38926982 (+)
G24972 NA other downstream 121789 39819276 ~ 39825718 (+)
G25601 NA other downstream 2694153 42391640 ~ 42392938 (+)
fgfr1op NA other downstream 2800235 42497722 ~ 42516642 (+)
LOC103026014 LOC103026014,LOC108411425 other downstream 3562133 43259620 ~ 43262099 (+)
rps29 NA other downstream 3662982 43360469 ~ 43363444 (+)

Expression


Co-expression Network