LOC103036931 (LOC103036931,LOC108432867,LOC108274078)


Basic Information

Item Value
gene id LOC103036931
gene name LOC103036931,LOC108432867,LOC108274078
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 39691978 ~ 39693182 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007259847.3
ATGGATTATCTAAACTTCTCAGACTACAGCATGCATGATCTCTCAGACATACACTTTTGCTACAGCTCCACCAATGGATCTTGTCGGAGAATCGTGAGACCTCTCAACGTCCAGATTTTTATGTTCCTCACAATGGCAATCACCATCCTGGTCACCCTTACAGGGAATCTACTAGTCATAGTTTCCATAGCCCACTTCAAGCAGCTCCACACGCCGACCAACCACCTCATCCTCTCTCTGGCAATGTGTGACTTTCTGCTGGGCATATTCGTCATGCCTCTGAGCACAGTGCGTTCGGTGCATGGCTGCTGGTACCTTGAAGACCTCATGTGCAAGCTGCATACAGGCATGGACATCATGCTTAGCACGGCTTCCATCTTTCACCTCATGTGTGTGTCAACAGAGCGCTTTTGTGCCGTGTGCAGTCCTCTGACGTACCGTTCACGCGTTCGCTCCGCCACCGTCTTGTGCATGGTCTCTGCTAGCTGGGTCATCTCAACTGTGTTTGCCTACACCATGGTCTTTAGCGAACTCAATTTCAAAGGTGCTGAGGCCTTCTACAATTCCAACGTGCGCTGTGTGGGCGGCTGCCACGTGTTCTTTAGCCGCGGTTCGGCCGTGGTCACTTCtatggtctctttttttatccCGGGTCTGATCATGTTCGGTATTTACTCCAGAATCTACGTTGTCGCCAGAGGGCAAGCAAGGTCCATTGACTTTCTTACCAATCAGCTGAGGACGGCCAGCAACAGGCCAGGAGAGTTCAGGTACCGCACACGGAAGGGCACAATGACTCTTGCAGTTGTGGTTGGAGTTTTCCTTATCTGTTGGACCCCCTTTTTCCTCTGCAATATCATAGACCCTTTTATTGACTTTACCATACCACCATCTTTAATAGATGccctggtttggtttggatatttgaaCTCTGCTCTAAATCCCTTTATTTATGCGTTTCTGTATCCTTGGTTCAGAAAAGCTTTGAGGATCATTGTAAGTGGGGAGGTTTTTCGAAGAAATAGTTGCAGAATACAGCTGTATTCATAATCAGTAGAGAGATGCTACAGGGCTTGTACACTGTTTGCATGAGCAAAAATTGAGCTTGGGCTATACTGGAATCACcagaaaatatttttgtgtAGTAAGTCTGCAGGGAAGCAATAGCAATATCATTTTGTGATACTGTTAGAATTAGATCAATT

Function

NR:

description
trace amine-associated receptor 1-like

GO:

id name namespace
GO:0007165 signal transduction biological_process
GO:0016020 membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG:

id description
K05051 TAAR; trace amine associated receptor

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007259847.3 True 1205 mRNA 0.47 1 39691978 39693182

Neighbor

gene id symbol gene type direction distance location
LOC103032818 NA coding downstream 24899 39665304 ~ 39667079 (-)
LOC103037563 LOC108432817 coding downstream 29662 39659836 ~ 39662316 (-)
LOC103037243 LOC108432794 coding downstream 34532 39656134 ~ 39657446 (-)
stx7 stx7 coding downstream 38917 39640238 ~ 39653061 (-)
LOC103038198 LOC108432800 coding downstream 53247 39637361 ~ 39638731 (-)
LOC103035296 LOC108432792 coding upstream 6110 39699292 ~ 39700706 (-)
LOC103035599 LOC103035599 coding upstream 10946 39704128 ~ 39705844 (-)
LOC111194344 NA coding upstream 25507 39718689 ~ 39720722 (-)
LOC111191820 NA coding upstream 34332 39727514 ~ 39728585 (-)
LOC111191823 NA coding upstream 40665 39733847 ~ 39734968 (-)
LOC111196215 NA non-coding downstream 167704 39514469 ~ 39524274 (-)
G24911 NA non-coding downstream 192512 39499043 ~ 39499466 (-)
LOC111196213 NA non-coding downstream 211634 39472824 ~ 39480344 (-)
LOC111191798 NA non-coding downstream 482713 39207480 ~ 39209265 (-)
G24860 NA non-coding downstream 503700 39187782 ~ 39188278 (-)
G24964 NA non-coding upstream 31273 39724455 ~ 39732479 (-)
G24992 NA non-coding upstream 126094 39819276 ~ 39825981 (-)
G24997 NA non-coding upstream 152191 39845373 ~ 39848209 (-)
G25128 NA non-coding upstream 690419 40383601 ~ 40421173 (-)
G25174 NA non-coding upstream 1032617 40725799 ~ 40726362 (-)
G24903 NA other downstream 233789 39455236 ~ 39458189 (-)
LOC103043888 LOC108432835 other downstream 345062 39273635 ~ 39346916 (-)
batf batf,LOC107697118 other downstream 367276 39309726 ~ 39324702 (-)
smim8 smim8 other downstream 764985 38925623 ~ 38926993 (-)
LOC103024598 LOC108411439 other downstream 769061 38887626 ~ 38922917 (-)
LOC111196341 NA other upstream 482080 40175262 ~ 40230868 (-)
G25265 slco5a1 other upstream 1521239 41214421 ~ 41218829 (-)
arhgap11a NA other upstream 1742859 41436041 ~ 41442494 (-)
LOC111196508 NA other upstream 2162913 41856095 ~ 41865844 (-)
LOC111196586 LOC108262118 other upstream 2175842 41869024 ~ 41880424 (-)

Expression


Co-expression Network