Gene
RNA
| Item | Value |
|---|---|
| gene id | G59937 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000009 |
| NCBI id | null |
| chromosome length | 16003125 |
| location | 15128835 ~ 15129131 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU68232 | True | 297 | lncRNA | 0.57 | 1 | 15128835 | 15129131 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000009_14974529_14974816 | NA | coding | downstream | 153415 | 14974042 ~ 14975420 (-) |
| CI01000009_14961220_14973307 | NA | coding | downstream | 155430 | 14960980 ~ 14973405 (-) |
| CI01000009_14905408_14907785 | NA | coding | downstream | 220758 | 14904489 ~ 14908077 (-) |
| CI01000009_14776978_14779978 | CX43.4 | coding | downstream | 346882 | 14776859 ~ 14781953 (-) |
| CI01000009_14763341_14773678 | NA | coding | downstream | 355154 | 14763212 ~ 14773681 (-) |
| CI01000009_15229965_15235247 | NA | coding | upstream | 100526 | 15229657 ~ 15235528 (-) |
| CI01000009_15301177_15304489 | NA | coding | upstream | 171966 | 15301097 ~ 15304500 (-) |
| CI01000009_15318811_15390382 | TNS1 | coding | upstream | 189680 | 15318811 ~ 15390382 (-) |
| CI01000009_15483720_15484321 | NA | coding | upstream | 354578 | 15483709 ~ 15484321 (-) |
| CI01000009_15504401_15585060 | NA | coding | upstream | 375215 | 15503406 ~ 15585829 (-) |
| G59927 | NA | non-coding | downstream | 14865 | 15113759 ~ 15113970 (-) |
| G59913 | NA | non-coding | downstream | 26015 | 15102603 ~ 15102820 (-) |
| G59899 | NA | non-coding | downstream | 36098 | 15092474 ~ 15092737 (-) |
| G59898 | NA | non-coding | downstream | 37089 | 15090954 ~ 15091746 (-) |
| G59821 | NA | non-coding | downstream | 151577 | 14976689 ~ 14977258 (-) |
| G59940 | NA | non-coding | upstream | 2478 | 15131609 ~ 15131869 (-) |
| G59963 | NA | non-coding | upstream | 22471 | 15151602 ~ 15152900 (-) |
| G59974 | NA | non-coding | upstream | 34149 | 15163280 ~ 15163485 (-) |
| G59996 | NA | non-coding | upstream | 56133 | 15185264 ~ 15185484 (-) |
| G60384 | NA | non-coding | upstream | 87948 | 15217079 ~ 15217280 (-) |
| G59811 | NA | other | downstream | 241371 | 14862397 ~ 14887464 (-) |
| G59490 | NA | other | downstream | 1090962 | 14033564 ~ 14037873 (-) |
| CI01000009_13975122_13976026 | NA | other | downstream | 1150221 | 13975099 ~ 13978614 (-) |
| G59097 | NA | other | downstream | 2839317 | 12288217 ~ 12289518 (-) |
| CI01000009_08858198_08860555 | NA | other | downstream | 6268272 | 8856310 ~ 8860563 (-) |
| G59941 | NA | other | upstream | 2973 | 15132104 ~ 15132503 (-) |
| CI01000009_15654061_15662554 | ARPC2 | other | upstream | 517644 | 15653760 ~ 15663026 (-) |
