LOC103046220 (LOC103046220)


Basic Information

Item Value
gene id LOC103046220
gene name LOC103046220
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 39199438 ~ 39202997 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007259878.3
GAGTGATTCTGCATGCAGCCaagatataaatatgtaaaactcCAGATTTATGAACAGTTGCCACAGACGGTGGACGACAGCAGACAACAGATACAGCATGAACCTCTTAAAGCGTGGGGACAAAGGTACAGAAAAAACAATCGCTGTTGCAGCGGTTGGACGGCATCTTCATTTGGGAATGCTGTACGATTGCCGCAATGATTCCTATGTTCCAGgaGTCTACTTGTGGGATATGGAGAGCATCGAAAAGAACAAGGTTGTGACCGAAAGGCCACAGACCTTTGTTAACATATCTCTGTCTGACTCGctggaagaaaaaacaaaattgcTACAAATCAGTTCTTCTCTGAGCGCGAGCTTACATGCAGGGTTAGTAAAGACTGAGGGTTCATCCTGCTACTTGAACGACAGATCGTCATCTACACATGATTGCAGGGCAACTATCCAGTACAGCGTCATGACCAAGACTGAGCACCTTAACTTGAGCCAGATGGGGAAGAAAAAGTCAATTCATAAATTAAGTGCCACTCACGTCATTACTGGAGTGGAATATGGTGCAGAAGCTCTGATGGTGTTCAGCGAAACAGTGACGACCGAGCAGCAGAAAAAAACGGTTAAAGCAAACATCAATTCAATGCTCAACAAGATCGGTATGTTTAGCGTCAACGTTGAGGGAAAGGTTGAAATGACCGAAGATGATAGAAAGAAAGTGCAGAACTTCGGTTGTACCTTCTATGGAGATTTTGATTTGGAAGAGAACCCCGCCAACTTTGAACAGGCAGTAAAAGTCTACAGAGAGCTTCCCAAACTACTTGGATCAAACAAGGAGAAAGCAGTGCCCAAGAAGTTCTGGCTTGTCCCATTAAGAGAAATCATGTCCTCAGTTCCGAAGCTGAAGCATGAAATCAGTGAAAAGAACTGCATTAAGATACAGGGTATAATGGAGCAGCTGGCCACGGCGCAAATGAGAGCAAACGACGTGTCTAAGGAGAGCAGCTCCATACAGGCCACAGACATCGTCAGGAACATGCAGACTTTTGTAACAAATCTTCAGAAATACACACTTATGTTGAAAGAGAACCTCTTCACAATCCTTCCTGAAATCAGAAAAGGTGTAGAGAAAGAGGACAAGCTGGAAAAGGTGTTCAAACTTCATGCAGAGTCACCCTTTTCACACAACAGCATGGACAACTGGCTGAAAGAGCGGGAGACTGAAGTTAGCATCATCAAATCCTACATAAACGATATTAATGTCCAAGACGTCCAGATCGTTTCTCCCGAAGACCTGGACAAAGTGCTGTACGATCCTAAGAATAAAAGCGTGTGGGCGTTTGTGTTCTCCTCTCTTGGAGAAGACGACCTCTACCTGAACTCCCTCAAGCTCTGCCTGCACTCGGAGAAGTTCACTAAAATGGAGCGTTTACCCTGCGACCTGCCGCCGCCAAGCAAATCTCAGCCTTGGTACAAATCTCCTGACATCTCCAAGATCATGAGAGAGTCTCTAAAGCTCTTTTGTAAAGGAGCTGCTGATCGCAACCTGTCCATCATCAGCTACATCAGCTACCCGTACACGCGAGGTGCTGCTGTCAGACTGTACACAAACTGTCATTTGGACTATGTCAACTACCAGAACAAATACGAGCCAGAGGTGGCCGAGGTCAGCGACAGCAGCATAAGCTTGAGACATTCAGTAAAGGCAGCTTCTCAAGCGATTTCATACAAGAAAGTGGCCGATGGGGACAAGGCACAGGAGCAGAAGCTGACGTGGCAAAATGGACAAGAAATCCTTGTGATCTCAGATCTGCTGCCCAACACCACCTACGAGATTCGGTTTGGCAAGCAGAACTGGAAGctcACAATTACGACCAAACCTGCATGAAGCATCGGGGTCACCAAGTCAAGACGACCAAATGCTGATGATTCGACAATCGCACAGGACAACAAATATTGCAGAGATTCAACAGACATTTGCACTATTCTGCATTGTTGCACCAGAGCTTATATACCTTTTTCTATATATCCACACTTAAGaacattgatatatatatatatgtttattttattggtgtggtgtagtgtgttgtaTTCAGGGATGGGTTTAGTGATTTGGGAGCCCCAGGCAAAAACAATAATGACACTTTctgtaaacacattttttaaaacttaaaattattttgggtattTTTTGTCATTAACTGTGTTTTACATTGCTTTCTTTCTTCATCAATATCACAGTGATATCAGGCCAGcataagaaataaatattgttcTGAATA

Function

NR:

description
verrucotoxin subunit beta-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007259878.3 True 2276 mRNA 0.44 4 39199438 39202997

Neighbor

gene id symbol gene type direction distance location
slc35a1 slc35a1,LOC106607707 coding downstream 7357 39173990 ~ 39192081 (-)
LOC103047758 LOC108415889,LOC103369403 coding downstream 54687 39131248 ~ 39144751 (-)
bub1 NA coding downstream 71405 39099426 ~ 39128033 (-)
htr1e htr1e coding downstream 188346 38957039 ~ 39011092 (-)
znf292 NA coding downstream 245993 38939398 ~ 38953445 (-)
LOC103044694 LOC103044694,LOC108414893 coding upstream 20886 39223883 ~ 39246614 (-)
LOC103044372 wdr26,LOC103044372,LOC108414895,LOC103363787 coding upstream 48047 39251044 ~ 39273282 (-)
LOC103034748 LOC107708319 coding upstream 71502 39274499 ~ 39306789 (-)
LOC103042954 NA coding upstream 153697 39356694 ~ 39361435 (-)
tmed10 tmed10 coding upstream 179203 39382200 ~ 39387492 (-)
G24860 NA non-coding downstream 11160 39187782 ~ 39188278 (-)
G24839 cf166,LOC103047239,LOC105017858,LOC100499587 non-coding downstream 45987 39147559 ~ 39153451 (-)
G24843 NA non-coding downstream 140872 39058005 ~ 39058566 (-)
G24842 NA non-coding downstream 141537 39057567 ~ 39057901 (-)
G24841 NA non-coding downstream 150481 39048757 ~ 39048957 (-)
LOC111191798 NA non-coding upstream 4483 39207480 ~ 39209265 (-)
LOC111196213 NA non-coding upstream 269827 39472824 ~ 39480344 (-)
G24911 NA non-coding upstream 296046 39499043 ~ 39499466 (-)
LOC111196215 NA non-coding upstream 311472 39514469 ~ 39524274 (-)
G24964 NA non-coding upstream 521458 39724455 ~ 39732479 (-)
smim8 smim8 other downstream 272445 38925623 ~ 38926993 (-)
LOC103024598 LOC108411439 other downstream 276521 38887626 ~ 38922917 (-)
wisp3 wisp3 other downstream 572386 38611046 ~ 38627052 (-)
ndufaf4 ndufaf4 other downstream 921723 38275466 ~ 38277715 (-)
ufl1 ufl1 other downstream 935764 38246771 ~ 38263674 (-)
LOC103043888 LOC108432835 other upstream 70638 39273635 ~ 39346916 (-)
batf batf,LOC107697118 other upstream 106729 39309726 ~ 39324702 (-)
G24903 NA other upstream 252239 39455236 ~ 39458189 (-)
LOC111196341 NA other upstream 972265 40175262 ~ 40230868 (-)
G25265 slco5a1 other upstream 2011424 41214421 ~ 41218829 (-)

Expression


Co-expression Network