rars2 (rars2)


Basic Information

Item Value
gene id rars2
gene name rars2
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 39155626 ~ 39171955 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007259879.3
TCACTGCGCTGCGCTTCACGGCAGCTCCGCAGTGTGTAGTTTAATggagtagtgaagtagtgaagCGGTGGAGTGGAGAGGTGGAGGAGTTCAGGGGTCTGTGAGGGATTTATCGCTGCTGGAGCGGAGGGAGCGCTGCTGTGTTCATGGCGTGTTTCTTCAGAAGAAGCGTCGCAGCGCAGCTCTCAAGAATCTGTGGAGCTCATGAAGATGTGTTTGTTCCCCTTCTCTCTGCCATTCCTCCatcaaaaaaacaGTTGAGCCCTGGCCTCCGTTTAACAGTAAACTCTCTGGTGAAGAATGGAACTTTCTCACGTGATGCCGATCTGCAGACTCAGACTGAGCGACTGGTCAAACAGGTGAAAGAGGATGGTGTAGTGCAGGAAGCTGTCGCTGGTCATGGGGTAATAAACTTCAGGATTAACACACTGCTACTGGCGGAGaaactgctggagcagctacATGCAGACCCCCAGAGTTTTGGAGTGAAGAGTGAAATCCTCCAAAACCTTAAGAAAGGAAGGACACTGGTGGAGTTCAGTTCACCCAACATTGCCAAGAAGTTTCACGCTGGACATCTACGATCCACCATAATTGGAAACTTCATCGCTAACCTAAAGCAGGCTTTGGGTAATGATGTCATACGGGTCAATTACCTGGGAGACTGGGGTATGCAGTTTGGGTTATTGGGTGCAGGGTTTCAACGGCTGGGCTCACAAGAGAAACTCCAAGAGAATGCACTGCAGCACCTGTATGAGGTGTACGTCCAGGTGAACCGGGAGGCGGAGCATGATGGAAGCATCCAATTGGCAGCAGCTGAGTTTTTTAGGCGGCTAGAGCAGCATGACAAGCAGGCTCTGTCGCTATGGAAACAATTCAGAGAGATCACAGTGGAGGAGTACAAGAAAATCTATGAGAGGTTAGGTGTTTATTTTGATCAGTATTCCGGTGAATCCTTTCATCAGAGTAAAACCCGGGAAGTATTAAAGGACCTCCAATCACAAGGCTTGCTGAAAACTACAGAGAAGGGGACAGGTGTGGTTGATCTCTCTGCGGAAGGAGACCTCTCATCATATGCTACTTTGGTGCGCAGTGATGGCACATCGCTTTACATCACCAGGGATGTGGCTGCAGCTTTGGATCGAAAAGAGAGATTCAGCTTTGATGAGATGATTTATGTGACAGATAAGAGTCAGTCGGTGCATTTCCAGCAGCTGTTCCAGATCCTGCAGGCTATGGGTCATCACTGGGCTGAtggGTGTGTGCATGTACCATTTGGGCTGGTGGTGGGGATGAGCTCTCGGCTGGGTGAGGTGGTGCTTTTGGAGGATATTCTGAATGAAGCTCGCTACAGGATGCTGCAGAACATGCGGGAGGCCAAGACCTCTAAGGAACTGGCTGATCCTGAGCTGACAGCAGAGCAGATAGGAGTCAGTGCATTGATCATTCAGgattTTAAGGGACCGCTGATTTCAGATTATAAATTTGACTGGCAGAAagtcctgcaggctcagggaGACACTGGAGTATTTCTGCAGTACACACATGCTCGCCTGCGCAGCTTGCTGAGGATGCACAGTAGTGAAAGTCACACACACTTTaatccagctcagctccaggaCAACAGGAGCCTCTCTATCCTGCAGCACCTTCTGAGGTATGATGAGGTTCTTCTTCAGTCTTCGTTGGACCTGCAGCCACGGCACTTGGTTAACTTCCTCATCACTCTGAGCCACCTCGCCTCATCTGCTCACAGAGAACTGCAGGTGAAGGGAAGCTCAGCTGAAGTGGCTCAGGCcaggctccgcctcttttcttgcacatgctcagttctATCCAATGGGATGAAGACTCTAGGCATCTCGCCAGTggagaaaatgtgatttttgtttttttgtatgtttttttttttaaagaataaattcAGTGAATATTCTGAACACTTGACATGTTACAGTTCCTAATTTCACCAAAGACACAATTACAACATTAAAAGATGCTGAAAATTA

Function

symbol description
rars2 Predicted to enable arginine-tRNA ligase activity. Acts upstream of or within brain morphogenesis. Predicted to be located in cytoplasm. Predicted to be active in mitochondrion. Human ortholog(s) of this gene implicated in pontocerebellar hypoplasia type 6. Orthologous to human RARS2 (arginyl-tRNA synthetase 2, mitochondrial).

NR:

description
probable arginine--tRNA ligase, mitochondrial isoform X2

GO:

id name namespace
GO:0006420 arginyl-tRNA aminoacylation biological_process
GO:0048854 brain morphogenesis biological_process
GO:0004814 arginine-tRNA ligase activity molecular_function
GO:0005524 ATP binding molecular_function

KEGG:

id description
K01887 RARS, argS; arginyl-tRNA synthetase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007259879.3 True 2009 mRNA 0.48 20 39155626 39171955

Neighbor

gene id symbol gene type direction distance location
LOC103047239 cf166,LOC103047239,LOC105017858,LOC100499587 coding upstream 2198 39147532 ~ 39153428 (+)
gjb7 gjb7,LOC106571283,LOC107576048,LOC107563147 coding upstream 221776 38928638 ~ 38933850 (+)
rev3l rev3l,LOC107569208,LOC104962055,LOC107396009,LOC107577708 coding upstream 355525 38747477 ~ 38800101 (+)
traf3ip2 LOC107550525 coding upstream 413042 38729312 ~ 38742584 (+)
LOC111191700 LOC108415880 coding upstream 429578 38721677 ~ 38726048 (+)
LOC103045608 LOC108411441 coding downstream 42226 39214181 ~ 39222236 (+)
LOC103043278 LOC103043278,LOC108432833 coding downstream 193852 39365807 ~ 39368293 (+)
LOC103042020 LOC108432804 coding downstream 240728 39412683 ~ 39427771 (+)
LOC103032515 NA coding downstream 496555 39668510 ~ 39669815 (+)
LOC103036628 NA coding downstream 522698 39694653 ~ 39697487 (+)
G24735 LOC101072348,LOC108415889,LOC103369403 non-coding upstream 10808 39131282 ~ 39144818 (+)
G24589 NA non-coding upstream 254260 38900986 ~ 38901366 (+)
G24578 NA non-coding upstream 268761 38886443 ~ 38886865 (+)
G24580 NA non-coding upstream 270907 38884087 ~ 38884719 (+)
G24579 NA non-coding upstream 271614 38883288 ~ 38884012 (+)
G24739 slc35a1,LOC106607707 non-coding downstream 1882 39173837 ~ 39180117 (+)
G24742 slc35a1,LOC106607707 non-coding downstream 12571 39184526 ~ 39192171 (+)
G24743 NA non-coding downstream 15825 39187780 ~ 39188334 (+)
G24748 NA non-coding downstream 70487 39242442 ~ 39251843 (+)
G24775 NA non-coding downstream 175691 39347646 ~ 39347962 (+)
G24719 NA other upstream 109845 39045170 ~ 39045781 (+)
G24583 NA other upstream 208404 38939357 ~ 38947222 (+)
G24594 smim8 other upstream 228644 38925696 ~ 38926982 (+)
fyn fynb,fyn,LOC107704353,LOC103458010 other upstream 438191 38667509 ~ 38717435 (+)
G24534 NA other upstream 569348 38585439 ~ 38586278 (+)
LOC111196173 NA other downstream 153128 39325083 ~ 39340971 (+)
eif2b2 eif2b2,LOC107697194,LOC107685362 other downstream 216912 39388867 ~ 39397878 (+)
G24972 NA other downstream 647321 39819276 ~ 39825718 (+)
G25601 NA other downstream 3219685 42391640 ~ 42392938 (+)
fgfr1op NA other downstream 3325767 42497722 ~ 42516642 (+)

Expression


Co-expression Network