LOC103047239 (cf166,LOC103047239,LOC105017858,LOC100499587)


Basic Information

Item Value
gene id LOC103047239
gene name cf166,LOC103047239,LOC105017858,LOC100499587
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 39147532 ~ 39153428 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007259881.3
TAATGTTTTGTTTCTCGCCATATTCGCTGGCCGGTTAGGAAGAGTGAGCAGTGCTGGTTTTGTACTTCCGAGAGAATCCGCGTTAATCTGAGTGATAAATGCTCAAGAATCTCAGTGGTTGAAGGGCCAGCCGGTCTGTAGGTTGTTTATCTTTTAGTCTGATGCGGTTTTGAGCGCTTGAGGAGATTCGGGAGCTGAAAAAACGACGTTAATTGAGTCCCCACCCCtgagagagaaaagacaagGAGCCCCTACGACAGCGGCTTCAGCAGCGTGTACACCGGTGTAATCCCCGCCGTAGGCGGATTATTACCTTTATTTCGCATTGCTGCTTCGTGTGAGAGACCATGGCGTGTGGAGCCACCCTAAAAAGGACTATGGACTGGGACCCAGTGTTGAACCCGGCTTCCCCCAAGCGGAGACGCTGCGCCCCGGTGTCCCCGGCTTCCTCCCCGCAGAAGTACCTGCGGATGGAGCCTAGCCCGTTTGGAGAAGTGTCCAGACTCAGTACAGagcaaaTCCTGTTTAACATAAAGCAGGAGTACAAACGGATGCAGAAGAGACGACACCTGGAGAGTTTCCAGCCCTCGGACACCTGCTGCCCGCTCGAGTCACAGCCAAGCACATCCCTTTCAGCACACACCGCGCTGACAGGTTTATCTGCTGGGTCATCATCCCCGTCCCGAAAAGAGCAGCCGTTATTTACTTTGAAACAGGTGGGAATGATCTGCGAGCGGCTGCTGAAGGAGCGAgaggagaaagtgagagaggagTATGACGAGATACTTACCACTAAACTTGCAGAACAGTACGATGCTTTTGTGAAGTTCACTCATGATCAGTTAATGCGGCGGTTTGGAGAGCAGCCGGCCAGCTATGTGTCCTGAGGGGGTCAGGTGGTTCTGGGTGCTGCTGTTGCTTTGGCCTGGTCGCTCACAGATGTACCTGTGATGTCCGTGGCGATGCAGTGAGGGTTTTTGGGCTGTCTGTGAAGCCCCGTCCCCTTCACTCCCACCGGGCACAGAGTGTTTCTCAGGCTTCTGTCTGTGATTTGAAACCCCCCCTCTCTCCTACTTCCCTCAGCAGCTGCCTGCTAATTGGAGTGCTTCCTGCCGTCAACACCAATTACATCAGTCTTTTGCAAAACTAATTCAGATTTGTGGCCTCTCTCATTTACTCAGATATTTATTAGGTTTTTCCTCTTGAtgccttttttaacatttacacatgGTTTCatctctgtttttcttcttttttttttaatacaaaatgcTCATGTAAAGTTGACTGTACcatgactgtgtgtgtatgtgtgcgtgtgtgttgtgGCCGTTTGGTCACTGCAGGGCGCATGTAGCTCTGACCTATTAGCTTTGTAAAAACGCATCTGGGATCTCCTCAGGATTTCTCATGTACAAATCACTCAACATATTTAGATTGAAGTCTCTTTGTTATTTTTGGTACCCTCCCacttgcttttatttattttttattttcatttttatttcatttttctccaACATTATGGTTTTACAGCTTGTGTACTTTAAATTGCTTTTATGTTGAGAAAATATTCAATAAATTGTTTACATGA

Function

NR:

description
akirin-2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007259881.3 True 1594 mRNA 0.47 5 39147532 39153428

Neighbor

gene id symbol gene type direction distance location
gjb7 gjb7,LOC106571283,LOC107576048,LOC107563147 coding upstream 213682 38928638 ~ 38933850 (+)
rev3l rev3l,LOC107569208,LOC104962055,LOC107396009,LOC107577708 coding upstream 347431 38747477 ~ 38800101 (+)
traf3ip2 LOC107550525 coding upstream 404948 38729312 ~ 38742584 (+)
LOC111191700 LOC108415880 coding upstream 421484 38721677 ~ 38726048 (+)
LOC103028301 LOC108415536,LOC107709524 coding upstream 484892 38645331 ~ 38662640 (+)
rars2 rars2 coding downstream 2198 39155626 ~ 39171955 (+)
LOC103045608 LOC108411441 coding downstream 60753 39214181 ~ 39222236 (+)
LOC103043278 LOC103043278,LOC108432833 coding downstream 212379 39365807 ~ 39368293 (+)
LOC103042020 LOC108432804 coding downstream 259255 39412683 ~ 39427771 (+)
LOC103032515 NA coding downstream 515082 39668510 ~ 39669815 (+)
G24735 LOC101072348,LOC108415889,LOC103369403 non-coding upstream 2714 39131282 ~ 39144818 (+)
G24589 NA non-coding upstream 246166 38900986 ~ 38901366 (+)
G24578 NA non-coding upstream 260667 38886443 ~ 38886865 (+)
G24580 NA non-coding upstream 262813 38884087 ~ 38884719 (+)
G24579 NA non-coding upstream 263520 38883288 ~ 38884012 (+)
G24739 slc35a1,LOC106607707 non-coding downstream 20409 39173837 ~ 39180117 (+)
G24742 slc35a1,LOC106607707 non-coding downstream 31098 39184526 ~ 39192171 (+)
G24743 NA non-coding downstream 34352 39187780 ~ 39188334 (+)
G24748 NA non-coding downstream 89014 39242442 ~ 39251843 (+)
G24775 NA non-coding downstream 194218 39347646 ~ 39347962 (+)
G24719 NA other upstream 101751 39045170 ~ 39045781 (+)
G24583 NA other upstream 200310 38939357 ~ 38947222 (+)
G24594 smim8 other upstream 220550 38925696 ~ 38926982 (+)
fyn fynb,fyn,LOC107704353,LOC103458010 other upstream 430097 38667509 ~ 38717435 (+)
G24534 NA other upstream 561254 38585439 ~ 38586278 (+)
LOC111196173 NA other downstream 171655 39325083 ~ 39340971 (+)
eif2b2 eif2b2,LOC107697194,LOC107685362 other downstream 235439 39388867 ~ 39397878 (+)
G24972 NA other downstream 665848 39819276 ~ 39825718 (+)
G25601 NA other downstream 3238212 42391640 ~ 42392938 (+)
fgfr1op NA other downstream 3344294 42497722 ~ 42516642 (+)

Expression


Co-expression Network