tube1 (tube1)


Basic Information

Item Value
gene id tube1
gene name tube1
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 38579963 ~ 38606640 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007259905.3
CAGCGCGCGACAGACTGGTTTGAACTGTTAAGGCGCGGATTAGCAGCTGAATTATATAGGTTATGTAGAActgacatcatcatcatcataattattataaatctatgTAAACCGGGCTGGTAGTGTTGAGATCTGGCTGTGGGAGTTCACACCGCGCTGCTGGAATGACTCAGTCGGTGGTTGTTCAGGTTGGACAGTGTGGTAACCAGGTGGGCTGCAGGTTTTGGGACCTGGCGCTGAGAGAGCATGCGCATGTCAACAAGAAAGGAATCTATGACGAGGCGCTTAGCAGCTTCTTTCAAAACGTAGATCCAAGgaGGAGtgatggaggaggtggaggagctACGGGCAGCAGGATCTCTGGGCTGAGGGCTCGGGCAGTGTTGGTGGACATGGAAGAAGGTGTTCTCAGCGAGGTCCTGCAGGGCCCTCTGCGACAGCTGTTCAGCACAACTCAGCTTATCAGTGATGTATCAGGCTCTGGAAACAACTGGGCGGTGGGCCACCACTCCTATGGCAGTGTGTATCGTGAGCAGATCGTGGATCAGGTGCGCAGAGCAGCAGAACAATGCGACTGCCTCCAGTGTTTCTTCATCATACACTCCATGGGTGGTGGAACCGGTTCAGGTTTGGGGACGCGTGTATTAAAGCTGCTGGAGGACGAATTCCCAGAGGTCTGCAGACTCGTCACCGCTGTCTATCCATCTGCTGAAGATGATGTCATCACTTCCCCCTACAACAGTGTTCTAGCCATGAGGGAGCTAACAGAACATGCAGACTGTGTTCTACCTATAGAGAACCAGTCTCTGGTGGATATTGTAAGTAAAATCCAGCACATGGCCCACACTGGAAAACCAGGAAGTGTGATAAAGAAAGACAGTACCATCATCTCTGGGCAGGGAGGAGTGGCCAAGACTGAGAAACCCTTCGATGCCATGAACAACATTGTGGCAAACCTTCTGCTCAACATTACCAGCTCTGCGCGTTTTGAAGGTTCTCTTAACATGGACCTGAATGAGATTGCGATGAACCTCGTCCCATTTCCTCGCTTACATTACCTGGTGTCCAGCCTCACTCCTCTGTACACACTGGCAGACGTTAATATTCCCACTCGCAGGCTGGACCAGATGTTTACTGATGCGTTTAGTAAAGATCACCAGCTCATGAGAGCGGACCCTAAACACAACTTGTATCTGGCCTGTGCTCTAATGCTGAGGGGCAACGTCCAGCTTTCTGACCTCCGGAGGAACATTGAAAGACTAAGGCCGACTCTGTCGTTCGTTCAGTGGAACACTGAAGGATGGAAGACGGGTCTGTGCTCAGTTCCTCCGGTTggtcacacacactctctgttgGCTCTGGCTAACAACACCTGCGTGAAGCCTTCCTTTATGGAGCTCAGAGAGCGCTTCGTCAGGCTCTACCGCAAAAAGGCTCACCTGCATCACTACCTGGGTGTGGATGGGATGGATGTGTCTGGTTTCAGTGAGGCTCTGAGTTCTCTCACAGGTCTGATAGACCAATACAGCCAGCTGGACTCCACCAATACAGCTCCCTCCCAGGACCCCCCCAGACTGAACATCGCCTGCTAAAGCCCAGATCAAAAATATCCCACCAGCTCTGGCTCTGAAATACTGGAAGCAGAAGTGCTTTTGATACAATAATTAAATCAAAAACTTGCCAATTTTCCTTCTAA

Function

symbol description
tube1 Predicted to enable GTP binding activity. Predicted to be a structural constituent of cytoskeleton. Predicted to be involved in microtubule cytoskeleton organization and mitotic cell cycle. Predicted to act upstream of or within microtubule-based process. Predicted to be located in cytoskeleton. Predicted to be active in cytoplasm and microtubule. Is expressed in several structures, including Kupffer's vesicle; forerunner cell group; nervous system; pronephric duct; and pronephric mesoderm. Orthologous to human TUBE1 (tubulin epsilon 1).

NR:

description
tubulin epsilon chain

GO: NA

KEGG:

id description
K10391 TUBE; tubulin epsilon

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007259905.3 True 1696 mRNA 0.51 12 38579963 38606640

Neighbor

gene id symbol gene type direction distance location
lama4 NA coding upstream 2804 38526578 ~ 38577159 (+)
hdac2 hdac2,LOC108416127 coding upstream 141899 38428649 ~ 38438064 (+)
hs3st5 hs3st5 coding upstream 152045 38416750 ~ 38427918 (+)
LOC103029663 NA coding upstream 179642 38381590 ~ 38400321 (+)
col10a1 col10a1,col10a1b,LOC108415286,LOC107548284,LOC107704357,LOC107710900 coding upstream 229639 38344389 ~ 38350324 (+)
LOC103028301 LOC108415536,LOC107709524 coding downstream 38691 38645331 ~ 38662640 (+)
LOC111191700 LOC108415880 coding downstream 115037 38721677 ~ 38726048 (+)
traf3ip2 LOC107550525 coding downstream 122672 38729312 ~ 38742584 (+)
rev3l rev3l,LOC107569208,LOC104962055,LOC107396009,LOC107577708 coding downstream 140837 38747477 ~ 38800101 (+)
gjb7 gjb7,LOC106571283,LOC107576048,LOC107563147 coding downstream 321998 38928638 ~ 38933850 (+)
G24485 NA non-coding upstream 76445 38503227 ~ 38503518 (+)
G24476 NA non-coding upstream 87258 38449995 ~ 38492705 (+)
G24474 NA non-coding upstream 139303 38440352 ~ 38440660 (+)
G24437 ufl1 non-coding upstream 320714 38256201 ~ 38259249 (+)
G24432 NA non-coding upstream 333674 38243485 ~ 38246289 (+)
G24541 NA non-coding downstream 10462 38617102 ~ 38617433 (+)
G24542 wisp3 non-coding downstream 10846 38617486 ~ 38617866 (+)
G24543 wisp3 non-coding downstream 13602 38620242 ~ 38620480 (+)
G24546 NA non-coding downstream 22128 38628768 ~ 38628976 (+)
G24559 NA non-coding downstream 198700 38805340 ~ 38809014 (+)
G24463 NA other upstream 197653 38359335 ~ 38382310 (+)
LOC111191729 LOC108416192 other upstream 200627 38359460 ~ 38379336 (+)
G24431 NA other upstream 342922 38232593 ~ 38237041 (+)
G24390 NA other upstream 481639 38092974 ~ 38098324 (+)
G24345 cwc15,LOC107747811,LOC107597228,LOC107732607 other upstream 645974 37928355 ~ 37933989 (+)
fyn fynb,fyn,LOC107704353,LOC103458010 other downstream 60869 38667509 ~ 38717435 (+)
G24594 smim8 other downstream 319056 38925696 ~ 38926982 (+)
G24583 NA other downstream 332717 38939357 ~ 38947222 (+)
G24719 NA other downstream 438530 39045170 ~ 39045781 (+)
LOC111196173 NA other downstream 718443 39325083 ~ 39340971 (+)

Expression


Co-expression Network