LOC103028301 (LOC108415536,LOC107709524)


Basic Information

Item Value
gene id LOC103028301
gene name LOC108415536,LOC107709524
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 38645331 ~ 38662640 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007259906.3
cacacacacacttacacacactgccGTCCTCCTCCTCTACCTCTTTCAGCaagtttctccctctcttcgcAGGTGTAACGAAGATCCTGACCTTACATATTTCTTTCCTCAAACACACCCTTTcccactaaatactaaatacctAAACATGAACAAAGACTGAAGTATTGTGCTGTTCAGTATCTGCTTAGTAGATTCTAATCCAATCCAGGATGAACTTTGATGAGGTTCTGGCTCGGATCGGAGGCTTCGGCCGCTTCCAGAAGATTTTGTATGTGTGGATCTGCCTCCCTCAGATCTTCCTGGCCTTCCACATGCTGGTGTCGGTTTTTACTGGAGCTGTGCCACCTCACCTGTGCCGAGACacgaaaacacacactcacaacttCAACTTCACCCTCAGCCAGAGTGCCAGCGAGGCTTGCGGTAGTACACACACCAACAGCAGccttagcacacacaccaccacGGCCTGCAGAGACGGCTGGGAGTTCAGCAAGGACGTGTTCCTCAGCACCGTTGTCACTGAGtttgaTCTAGTGTGTGACAGTGCCACTCTGAACAACATCGGATCATCTATCTACATGTTTGGGCTGCTGGTTGGTGCTGTGGTGTTTGGTGTACTAGCTGACCGGTACGGTCGCAGGATCATTATTCTGGTGGGTCTGGCTTTGCAGGCTATGTTTGGTGTCGGTGCTGCGTTTGCTCCCAACTTCTTCATCTATGTGTTACTGCGGTTTGTGGTGGGAACCACTGTATCAGGAATCATCATGAACGCATTTGTACTagGTACTGAATGGACAGGTCCTAAACACCGGATGTTGGCAGGAATTATAACAGACTATTTCTTCGGCGTGGGCTACATCCTGCTGGCTGGAGTGGCGTATCTTATACGGGACTGGCGTAAACTCCAGCTTGCCATATCTGCCCCTGgtttcatcttcatcttctacATCTGGGTGCTCCCAAAGTCAGCTCGCTGGCTGATGGCGAATGGGAAGCAGGAGGAGGCGATGGATCTGATCTGTAAAGCTGCACTCATCAATAAAAAGCCTCTGAAAGGCAACGACATGGAGTTTCAGCTGAACAACTGTAAAGTTGAGCAAAAACTACAGAGGAAACACACAGTGGTGGATCTGGTGCGGACGCCACAGATGAGGAAACAGTCACTAATCCTCTTCTATCTCTGgtttgTAAACGTGCTGGTCTACTACGGTCTGTCTCTAAATGTTTCTGACTTTGGAATGAACATCTACTTAACCCAGCTGATCTTTGGGCTGGTGGAGATGCCAGCACGTACCATCACACTCTTTACCCTAAACCGCTCTCGCAGGATCTCTCAGCTTTCTTTCCTTGCTGTGGGGGGGCTTGCTTGCCTCCTCACCATCTTCATCCCCCAAAATCTACCAGTGGTCCGAACCATCCTGGCCATGTTGGGAAAGTTTGGTATTACAGCCTCGCTGTCCATTGTCTACGTTTATTCAGCAGAGGTGTTTCCCACTGTCGTCAGgcAGAACGGCATCGGCATGGGCTCTATGTGTGCTCGTGCAGGTGGGGTGATTGCACCCATAATCTACCTCCTCAGACGCATCAGTCCGCACGCTCCTATGGTGGTGTTTGGCCTGTGTCCACTAGTGGGTGCTCTACTGACCATTCTACTGCCTGAGACGGCCCACAAACCCCTGCCAGACACCATTGAGGATGTGGAAGGCACCAGTAACAAGGCAGAAACACAGATCTCGGATGGCATCATCTAACCGAGATTAGAACCAGTGGGGTGTTTGTTCTGAAGGACAATTGAGAAGGACATTTTTTTAACCTCAACAACCACATGCACACACTTAGGCcagaaatgtatgtatgtgaaaGCAATACATAACACAACGCAAGCTACATGCTGAGTATTTCCAAAAGAGGCACCACATCTACAGTCAAGGGCTTTAAAGTTTCAGGACATGCATGAAGGAGTCCTTATTGAATGGGGCTGAACAGAGCAAAATGGCTTAAACGGTAATAAAATGTGATATAGTTCTAGTCTCTTCTAGTCTTTCTTTTTGGAAAGAAGAATAATGTATTACCGAAAATTACCCCTGAATACCAGGACATTTCTATATCAAACAGCTAATGTAACTGCTACTGAATGCTAGATAGCATTATGACTACTGAGTATTGGTGAGCTGAGCTGCTCATTTGCTGAGCTGCTCCAACTCTGGTTGGACTTTGggtttattaaaacatgattaaaaagttcTTAACACTTtcttgcagctttctgagatccagtattttgtgcactttgcc

Function

NR:

description
PREDICTED: solute carrier family 22 member 13-like

GO: NA

KEGG:

id description
K08202 SLC22A4_5, OCTN; MFS transporter, OCT family, solute carrier family 22 (organic cation transporter), member 4/5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007259906.3 True 2301 mRNA 0.48 10 38645331 38662640

Neighbor

gene id symbol gene type direction distance location
tube1 tube1 coding upstream 38691 38579963 ~ 38606640 (+)
lama4 NA coding upstream 68172 38526578 ~ 38577159 (+)
hdac2 hdac2,LOC108416127 coding upstream 207267 38428649 ~ 38438064 (+)
hs3st5 hs3st5 coding upstream 217413 38416750 ~ 38427918 (+)
LOC103029663 NA coding upstream 245010 38381590 ~ 38400321 (+)
LOC111191700 LOC108415880 coding downstream 59037 38721677 ~ 38726048 (+)
traf3ip2 LOC107550525 coding downstream 66672 38729312 ~ 38742584 (+)
rev3l rev3l,LOC107569208,LOC104962055,LOC107396009,LOC107577708 coding downstream 84837 38747477 ~ 38800101 (+)
gjb7 gjb7,LOC106571283,LOC107576048,LOC107563147 coding downstream 265998 38928638 ~ 38933850 (+)
LOC103047239 cf166,LOC103047239,LOC105017858,LOC100499587 coding downstream 484892 39147532 ~ 39153428 (+)
G24546 NA non-coding upstream 16355 38628768 ~ 38628976 (+)
G24543 wisp3 non-coding upstream 24851 38620242 ~ 38620480 (+)
G24542 wisp3 non-coding upstream 27465 38617486 ~ 38617866 (+)
G24541 NA non-coding upstream 27898 38617102 ~ 38617433 (+)
G24535 NA non-coding upstream 52804 38590941 ~ 38592527 (+)
G24559 NA non-coding downstream 142700 38805340 ~ 38809014 (+)
G24564 NA non-coding downstream 154594 38817234 ~ 38821337 (+)
G24575 rpf2,LOC102791246 non-coding downstream 206094 38868734 ~ 38877657 (+)
G24579 NA non-coding downstream 220648 38883288 ~ 38884012 (+)
G24580 NA non-coding downstream 221447 38884087 ~ 38884719 (+)
G24534 NA other upstream 59053 38585439 ~ 38586278 (+)
G24463 NA other upstream 263021 38359335 ~ 38382310 (+)
LOC111191729 LOC108416192 other upstream 265995 38359460 ~ 38379336 (+)
G24431 NA other upstream 408290 38232593 ~ 38237041 (+)
G24390 NA other upstream 547007 38092974 ~ 38098324 (+)
fyn fynb,fyn,LOC107704353,LOC103458010 other downstream 4869 38667509 ~ 38717435 (+)
G24594 smim8 other downstream 263056 38925696 ~ 38926982 (+)
G24583 NA other downstream 276717 38939357 ~ 38947222 (+)
G24719 NA other downstream 382530 39045170 ~ 39045781 (+)
LOC111196173 NA other downstream 662443 39325083 ~ 39340971 (+)

Expression


Co-expression Network