hs3st5 (hs3st5)


Basic Information

Item Value
gene id hs3st5
gene name hs3st5
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 38416750 ~ 38427918 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007259909.3
AAGTGGGACGTTTTGTACCAGAGCGCGTGATCTCCTCCCTGAGCGGCTCAGACATCCCAGTCCATCCCTCAAAACTGAAGAGCAGCGCGTGCTCCTGTGTTTATCTGCACAGGAATTCTGCtgactgcctctctctctctctctctctctctctctctctctctctctctctctcactgataAAGGATGCCCGTGCTGGAGGAGAACCACTGGTGAAGgtGTAGTTGGTGTGTGTGATGGGATGATGGGAGATGTTGTTCCCCCAGCTGGCTGTGCTGCTCAGCCTGGTGCTCGGGACACTGCTGTACCTGCTGACTCACACAGTTCACCTGGAGAGGCTGCATCAAATCTGCCCCATCAAGAGCCGACCACACCCTGCTCGTGATCCAGTGCAGTTCCCCTTTCGACCACCAAAGTATAAGCGGGGTCTTCGGCAGGATCTTCGCAGGGGCAACACCACTAAGGGGCACCTGATCCAGGAGCTGCCCCATGCCATTATCATTGGAGTCAGGAAGGGTGGCACTCGTGCACTGCTGGAGATGCTGAGCCTTCATCCCGCCATGGTCAAGGCCTCACAGGAGGTCCACTTCTTCGACAGTGATCAGAATTATGGCAGGGGTGTGGCCTGGTACCGCCGCAGGATGCCATTCTCCCTCACTGGCCAAATCACTATTGAGAAAAGCCCCGCCTACTTTGTGACGGAGAAGGTCCCGGAGCGGATTTTCAGGATGAATTCCTCCACAAAGCTGCTGGTGATCGTCCGCGAGCCAACGATTCGTGCAATCTCTGATTACACACAGGTGCTGGAGGGAAAAGAGCGCAAGAATAAAACGTACCCCAGGTTTGAGGTGCTGGCCATCAACCCCAGCACCCAGGAGGTGAACACCAAGTACAAAGCTGTCCGCACCAGCATCTACGCCAAACACCTGGAGCACTGGCTGGAGTTCTTCCCCGTCCAGCAGTTTCATGTGGTGGATGGAGACAGGCTGATCTCAGACCCGCTGCCTGAGCTCCGTTTGGTTGAGAAGTTCCTGAACCTTCCACCTGGTATCAGCCAAGAGAACTTGTATTTCAACTCTACACGGGGTTTCTACTGCCTGCGCTTTAGCCGCCGCTTCAGTAAGTGCCTGGCGGGCAGCAAGGGCCGGCCACACCCGGACGTGGACCTGGCTGTGCTGGATAAGCTCAGGCGCTTCTACCGTCCATTCAACCAGAAATTTTACCAGATGACTGGGAGGAAATTTGACTGGCCGTGAGGAGGTCGAATGGCAGATCTTTTTAACCAGGGGGTGCTAAACTGCTGTCCTGCTTACAGCTATAAGCAATTAAGATGAAACATAACTTTGTAACTTTGAAATATGTAGagctatttttttactaaatgcaTTAATGTTTGCCTGTAAATAAGATTTTCGTCTTGcatataaacaaacacagtatATACAAAAGTAACACAGGTTAGTCTGCATTCTACACATGTTGAACCCCCCTGACTGTTAATAAGCTGAGCTGTGAGATCTAAAATGGGGATTTGATCAAATGTAAAGTTAATGTTGGTGATTGTTTAATGATGAAGTGTACTATACATGAAGCCCTTCTTGTGTTCCTTAATAATTAATTCTGACTGAATTAATCACTATAATGCACCACTCTCATAATACAGTACAATTCAATCAGTCTCTGTTTTAATAGCTTGACGAGGTGGACAGCACATTgtatataatgaaaataaataataaatataacataaat

Function

symbol description
hs3st5 Enables [heparan sulfate]-glucosamine 3-sulfotransferase 1 activity. Involved in several processes, including heparan sulfate proteoglycan biosynthetic process, enzymatic modification; protein sulfation; and regulation of viral entry into host cell. Predicted to be located in Golgi membrane.

NR:

description
PREDICTED: heparan sulfate glucosamine 3-O-sulfotransferase 5

GO: NA

KEGG:

id description
K08104 HS3ST5; [heparan sulfate]-glucosamine 3-sulfotransferase 5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007259909.3 True 1752 mRNA 0.49 4 38416750 38427918

Neighbor

gene id symbol gene type direction distance location
LOC103029663 NA coding upstream 16429 38381590 ~ 38400321 (+)
col10a1 col10a1,col10a1b,LOC108415286,LOC107548284,LOC107704357,LOC107710900 coding upstream 66426 38344389 ~ 38350324 (+)
LOC103045011 LOC103045011,LOC108414810 coding upstream 427817 37984712 ~ 37988933 (+)
LOC103046026 cx27.5,LOC108414812,LOC107597344,LOC107687661,LOC107680359,LOC107592389,LOC107732608 coding upstream 441491 37969234 ~ 37975259 (+)
LOC103021778 NA coding upstream 779122 37633781 ~ 37637628 (+)
hdac2 hdac2,LOC108416127 coding downstream 731 38428649 ~ 38438064 (+)
lama4 NA coding downstream 98660 38526578 ~ 38577159 (+)
tube1 tube1 coding downstream 152045 38579963 ~ 38606640 (+)
LOC103028301 LOC108415536,LOC107709524 coding downstream 217413 38645331 ~ 38662640 (+)
LOC111191700 LOC108415880 coding downstream 293759 38721677 ~ 38726048 (+)
G24437 ufl1 non-coding upstream 157501 38256201 ~ 38259249 (+)
G24432 NA non-coding upstream 170461 38243485 ~ 38246289 (+)
G24359 NA non-coding upstream 380002 38027773 ~ 38036748 (+)
G24340 fam76b,fa76b,LOC107680374,LOC107687655,LOC107592275,LOC106603374 non-coding upstream 472816 37938839 ~ 37943934 (+)
G24341 LOC108415597 non-coding upstream 506227 37906277 ~ 37910523 (+)
G24474 NA non-coding downstream 12434 38440352 ~ 38440660 (+)
G24476 NA non-coding downstream 22077 38449995 ~ 38492705 (+)
G24485 NA non-coding downstream 75309 38503227 ~ 38503518 (+)
G24531 NA non-coding downstream 153709 38581627 ~ 38582793 (+)
G24535 NA non-coding downstream 163023 38590941 ~ 38592527 (+)
G24463 NA other upstream 34440 38359335 ~ 38382310 (+)
LOC111191729 LOC108416192 other upstream 37414 38359460 ~ 38379336 (+)
G24431 NA other upstream 179709 38232593 ~ 38237041 (+)
G24390 NA other upstream 318426 38092974 ~ 38098324 (+)
G24345 cwc15,LOC107747811,LOC107597228,LOC107732607 other upstream 482761 37928355 ~ 37933989 (+)
G24534 NA other downstream 157521 38585439 ~ 38586278 (+)
fyn fynb,fyn,LOC107704353,LOC103458010 other downstream 239591 38667509 ~ 38717435 (+)
G24594 smim8 other downstream 497778 38925696 ~ 38926982 (+)
G24583 NA other downstream 511439 38939357 ~ 38947222 (+)
G24719 NA other downstream 617252 39045170 ~ 39045781 (+)

Expression


Co-expression Network