LOC103047134 (LOC103047134)


Basic Information

Item Value
gene id LOC103047134
gene name LOC103047134
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 8975458 ~ 8979618 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007260049.3
aaataacactggcaagttaaaaaatatttataataataaactataaagCTATAAAACTATACTTTTTCTAATCACGTATATGACCTTAACgttttaaccctctatggcaaaCCACTGTTTGATTACACCATTCCtttaatttttgtaatgttatttttttgtcacaaaatatcaatatcaatagtattaatatttatCAATATCATTTGTGTTTTAGTTGTTGCATCAGGATAACAGCTAGACCATATTTGTTGGGAATAATTGCTAAAGCAGTggtggtgtttaaaaaaaaaatatctatgctataaagggttaactttacctgaTACAGTGAACTAGCCTATCCTCATATCCTACCTAGGCTTCTGCTGAgagttctttgtttgtttgtttgtttctaatatgattttttatttttttgtatttttacctttttaaaaattaaattctactactagggaagcacggtttgacaaggagCTAAAGCAGGGAAATTCTCTTACAGCTGCTTTTAAACTGCTGTTAAAATGTCTTTCGGGGGAGCAGTGTGGCTGGCTGTGCAGGAGGACCTGTACAGAGGGTTTAGTAGCGGATATGACCATAAAAATTCCTCCAGCAGCAGATCCAACATCTCCAGCAGctccaacagcagcagcactgagGAGTCCAGAGGTATCCTGGGCCGCATGGATGACTACTTTCTTTCCCAGTGTTTCCATTCATCTCGAGCCTGCCTGGCCTTTCTGATCGACTACGTTACATCTCGTCTACAGAAGGATGTGTTCAGACCAGTCAGCGACTCTGCCTCAGTAGAAGCCATGATTTTAGCCACGCTGCACTTCTGTTCACATGGGTTTCTACCCAAGAAAATCACAGACCTGCTGGGGCTGGACCAGCTAGCTGCAGCTGAGGGGGTAAACCTCATATCTAAAGTCCTGGCGGACATGTCCCACAGCTTCATCACCTTCCCAGGCAGCTATGATGACCGTATGGGTGTAGCTCAGGGATTTAAAAACATCAGTGGCATCCCAAACGTGGTGGGAGTCCTGGGCTGTTTACATGTAAGAGTGACACctcctcctactactactactactacagaaAGCCTCTACCTCAACCCTCTGGGTTACAATTCAGTGATGATGCAGATCATCAGTGATGTGGATGGAAATCTGCTcagtgttgagcagtgttgtCCTGGGGGCACTCTGGAAAAGACTGTTTGGGAAAAGTCCAACATTTACCAGGAGTTCATCAATTTCCAGCATGGCCAGACATGGCTTGTTGGTGGCAAAGGGCTGCCTCAAAGTAGGCACATGTTGACTCCTGTGCAGCGCACTCAAAGCAAGACCAGTGCAGCCGAACGTTTCAATGCTGCTCATTCTGCGCTCCTGAGCTCCAATCAGCACGTTATTGGTTGTCTGAAAACCCGTTTCCAGTGCCTGCACGGACTTGGAGCTGTGCAGGCCAACAAGCTTGAGACATTCAGCCGTATTATCACAGCTTGTTGCGTGCTTCACAACATCTATAAGAAATTCTCTGTGCCACTACCCAGAGAGCCGGTGTTGGAGCCTCTACCCCCAGTTCAAGTGAGGAAAGAAGGGGAGGAGAAATCCTTTTGCTACATGGGAGAGACACAAGAAGACATGATAGAAATGTGTTTTGGTAATGATGGAGATTAGCAGGTGCAGGACCAGAAAAAGGACATCGAGGAGAGGAGCAAACAAACTTGGGTCTGTTAAAAGGATTTTGCCAAATGTGTTACAGATGGAGGACGGGTGTGTATTTTGGGTctgttttgctaaaaaaaaaaaaaaaaaatactttggaCAAAGTGGACATGACGTAGTAAAAAATCATCTCCATCTCACCCAAACGAGGTGATATAAGAAGAACAGATGCTGCTTTTATAGCGCTCCATGCTCCTCACAGTAGTACAGAAGTAGCTCACACAGTTGCCTTATTTCTATTAGGTCACAATTAAACTGATTTATTGTTTCTATAGGTCTGCTCAAATTGTGATTCTGATTTCACTATGTGAACCATAATAGTGTGAAATGCAGTTTTACACATATAtaggaatatttttatttaagtcaATGCAGTTGCAGTAACCATTATAGAGACAGCAGTTGTGTGTTACAAAAACGGAGCATGTGAACACCCATTGCAGTATGCATCCATTCTGCCATTCACAATATAAACCTTTCATCAGGTATGGCTATACTTActgtttatgttaaaaaataaaagtattatgCATCTGTAATGTTAGcagaaatatatcatataaaatatgtttaagagTATAAACCAATCTTTACATTGCTAcctcttttgccttttttttaagtacaataaCACAGTGGCATTGTTGCTGTATTTGTTGTCAGAAACTTTTGATAGAAGTTTGTGAGCAGTAATGGTTACATTTGATATGGATGAATTCATTTTTGTAGATAAAGGTAGTATAAATGAGCCTTGAAGATAA
>XM_022680071.1
GGGCGCTAGTAGGAAGAAGAAGGCAGAATCCATCGCGTTCCGCTTCTTCGCGGGCATGCGAATATACACCAGCAAACACGGATAATAAAAGGTACAGCGGCGTTTTATTGTTGTGGACTTTAACGCGAATTAACCTCCAGTAtccagaggaagaggaagagctgctgctgctgctgctgctgaaaccAGTGAGGGATATAGAAGCTCCAGggaagcacggtttgacaaggagCTAAAGCAGGGAAATTCTCTTACAGCTGCTTTTAAACTGCTGTTAAAATGTCTTTCGGGGGAGCAGTGTGGCTGGCTGTGCAGGAGGACCTGTACAGAGGGTTTAGTAGCGGATATGACCATAAAAATTCCTCCAGCAGCAGATCCAACATCTCCAGCAGctccaacagcagcagcactgagGAGTCCAGAGGTATCCTGGGCCGCATGGATGACTACTTTCTTTCCCAGTGTTTCCATTCATCTCGAGCCTGCCTGGCCTTTCTGATCGACTACGTTACATCTCGTCTACAGAAGGATGTGTTCAGACCAGTCAGCGACTCTGCCTCAGTAGAAGCCATGATTTTAGCCACGCTGCACTTCTGTTCACATGGGTTTCTACCCAAGAAAATCACAGACCTGCTGGGGCTGGACCAGCTAGCTGCAGCTGAGGGGGTAAACCTCATATCTAAAGTCCTGGCGGACATGTCCCACAGCTTCATCACCTTCCCAGGCAGCTATGATGACCGTATGGGTGTAGCTCAGGGATTTAAAAACATCAGTGGCATCCCAAACGTGGTGGGAGTCCTGGGCTGTTTACATGTAAGAGTGACACctcctcctactactactactactacagaaAGCCTCTACCTCAACCCTCTGGGTTACAATTCAGTGATGATGCAGATCATCAGTGATGTGGATGGAAATCTGCTcagtgttgagcagtgttgtCCTGGGGGCACTCTGGAAAAGACTGTTTGGGAAAAGTCCAACATTTACCAGGAGTTCATCAATTTCCAGCATGGCCAGACATGGCTTGTTGGTGGCAAAGGGCTGCCTCAAAGTAGGCACATGTTGACTCCTGTGCAGCGCACTCAAAGCAAGACCAGTGCAGCCGAACGTTTCAATGCTGCTCATTCTGCGCTCCTGAGCTCCAATCAGCACGTTATTGGTTGTCTGAAAACCCGTTTCCAGTGCCTGCACGGACTTGGAGCTGTGCAGGCCAACAAGCTTGAGACATTCAGCCGTATTATCACAGCTTGTTGCGTGCTTCACAACATCTATAAGAAATTCTCTGTGCCACTACCCAGAGAGCCGGTGTTGGAGCCTCTACCCCCAGTTCAAGTGAGGAAAGAAGGGGAGGAGAAATCCTTTTGCTACATGGGAGAGACACAAGAAGACATGATAGAAATGTGTTTTGGTAATGATGGAGATTAGCAGGTGCAGGACCAGAAAAAGGACATCGAGGAGAGGAGCAAACAAACTTGGGTCTGTTAAAAGGATTTTGCCAAATGTGTTACAGATGGAGGACGGGTGTGTATTTTGGGTctgttttgctaaaaaaaaaaaaaaaaaatactttggaCAAAGTGGACATGACGTAGTAAAAAATCATCTCCATCTCACCCAAACGAGGTGATATAAGAAGAACAGATGCTGCTTTTATAGCGCTCCATGCTCCTCACAGTAGTACAGAAGTAGCTCACACAGTTGCCTTATTTCTATTAGGTCACAATTAAACTGATTTATTGTTTCTATAGGTCTGCTCAAATTGTGATTCTGATTTCACTATGTGAACCATAATAGTGTGAAATGCAGTTTTACACATATAtaggaatatttttatttaagtcaATGCAGTTGCAGTAACCATTATAGAGACAGCAGTTGTGTGTTACAAAAACGGAGCATGTGAACACCCATTGCAGTATGCATCCATTCTGCCATTCACAATATAAACCTTTCATCAGGTATGGCTATACTTActgtttatgttaaaaaataaaagtattatgCATCTGTAATGTTAGcagaaatatatcatataaaatatgtttaagagTATAAACCAATCTTTACATTGCTAcctcttttgccttttttttaagtacaataaCACAGTGGCATTGTTGCTGTATTTGTTGTCAGAAACTTTTGATAGAAGTTTGTGAGCAGTAATGGTTACATTTGATATGGATGAATTCATTTTTGTAGATAAAGGTAGTATAAATGAGCCTTGAAGATAA
>XM_022680076.1
AGGGCGCTAGTAGGAAGAAGAAGGCAGAATCCATCGCGTTCCGCTTCTTCGCGGGCATGCGAATATACACCAGCAAACACGGATAATAAAAGGTACAGCGGCGTTTTATTGTTGTGGACTTTAACGCGAATTAACCTCCAGTAtccagaggaagaggaagagctgctgctgctgctgctgctgaaaccAGTGAGGGATATAGAAGCTCCAGCTGCTTTTAAACTGCTGTTAAAATGTCTTTCGGGGGAGCAGTGTGGCTGGCTGTGCAGGAGGACCTGTACAGAGGGTTTAGTAGCGGATATGACCATAAAAATTCCTCCAGCAGCAGATCCAACATCTCCAGCAGctccaacagcagcagcactgagGAGTCCAGAGGTATCCTGGGCCGCATGGATGACTACTTTCTTTCCCAGTGTTTCCATTCATCTCGAGCCTGCCTGGCCTTTCTGATCGACTACGTTACATCTCGTCTACAGAAGGATGTGTTCAGACCAGTCAGCGACTCTGCCTCAGTAGAAGCCATGATTTTAGCCACGCTGCACTTCTGTTCACATGGGTTTCTACCCAAGAAAATCACAGACCTGCTGGGGCTGGACCAGCTAGCTGCAGCTGAGGGGGTAAACCTCATATCTAAAGTCCTGGCGGACATGTCCCACAGCTTCATCACCTTCCCAGGCAGCTATGATGACCGTATGGGTGTAGCTCAGGGATTTAAAAACATCAGTGGCATCCCAAACGTGGTGGGAGTCCTGGGCTGTTTACATGTAAGAGTGACACctcctcctactactactactactacagaaAGCCTCTACCTCAACCCTCTGGGTTACAATTCAGTGATGATGCAGATCATCAGTGATGTGGATGGAAATCTGCTcagtgttgagcagtgttgtCCTGGGGGCACTCTGGAAAAGACTGTTTGGGAAAAGTCCAACATTTACCAGGAGTTCATCAATTTCCAGCATGGCCAGACATGGCTTGTTGGTGGCAAAGGGCTGCCTCAAAGTAGGCACATGTTGACTCCTGTGCAGCGCACTCAAAGCAAGACCAGTGCAGCCGAACGTTTCAATGCTGCTCATTCTGCGCTCCTGAGCTCCAATCAGCACGTTATTGGTTGTCTGAAAACCCGTTTCCAGTGCCTGCACGGACTTGGAGCTGTGCAGGCCAACAAGCTTGAGACATTCAGCCGTATTATCACAGCTTGTTGCGTGCTTCACAACATCTATAAGAAATTCTCTGTGCCACTACCCAGAGAGCCGGTGTTGGAGCCTCTACCCCCAGTTCAAGTGAGGAAAGAAGGGGAGGAGAAATCCTTTTGCTACATGGGAGAGACACAAGAAGACATGATAGAAATGTGTTTTGGTAATGATGGAGATTAGCAGGTGCAGGACCAGAAAAAGGACATCGAGGAGAGGAGCAAACAAACTTGGGTCTGTTAAAAGGATTTTGCCAAATGTGTTACAGATGGAGGACGGGTGTGTATTTTGGGTctgttttgctaaaaaaaaaaaaaaaaaatactttggaCAAAGTGGACATGACGTAGTAAAAAATCATCTCCATCTCACCCAAACGAGGTGATATAAGAAGAACAGATGCTGCTTTTATAGCGCTCCATGCTCCTCACAGTAGTACAGAAGTAGCTCACACAGTTGCCTTATTTCTATTAGGTCACAATTAAACTGATTTATTGTTTCTATAGGTCTGCTCAAATTGTGATTCTGATTTCACTATGTGAACCATAATAGTGTGAAATGCAGTTTTACACATATAtaggaatatttttatttaagtcaATGCAGTTGCAGTAACCATTATAGAGACAGCAGTTGTGTGTTACAAAAACGGAGCATGTGAACACCCATTGCAGTATGCATCCATTCTGCCATTCACAATATAAACCTTTCATCAGGTATGGCTATACTTActgtttatgttaaaaaataaaagtattatgCATCTGTAATGTTAGcagaaatatatcatataaaatatgtttaagagTATAAACCAATCTTTACATTGCTAcctcttttgccttttttttaagtacaataaCACAGTGGCATTGTTGCTGTATTTGTTGTCAGAAACTTTTGATAGAAGTTTGTGAGCAGTAATGGTTACATTTGATATGGATGAATTCATTTTTGTAGATAAAGGTAGTATAAATGAGCCTTGAAGATAA
>XM_022680081.1
AGGGCGCTAGTAGGAAGAAGAAGGCAGAATCCATCGCGTTCCGCTTCTTCGCGGGCATGCGAATATACACCAGCAAACACGGATAATAAAAGGTACAGCGGCGTTTTATTGTTGTGGACTTTAACGCGAATTAACCTCCAGTAtccagaggaagaggaagagctgctgctgctgctgctgctgaaaccACTGCTTTTAAACTGCTGTTAAAATGTCTTTCGGGGGAGCAGTGTGGCTGGCTGTGCAGGAGGACCTGTACAGAGGGTTTAGTAGCGGATATGACCATAAAAATTCCTCCAGCAGCAGATCCAACATCTCCAGCAGctccaacagcagcagcactgagGAGTCCAGAGGTATCCTGGGCCGCATGGATGACTACTTTCTTTCCCAGTGTTTCCATTCATCTCGAGCCTGCCTGGCCTTTCTGATCGACTACGTTACATCTCGTCTACAGAAGGATGTGTTCAGACCAGTCAGCGACTCTGCCTCAGTAGAAGCCATGATTTTAGCCACGCTGCACTTCTGTTCACATGGGTTTCTACCCAAGAAAATCACAGACCTGCTGGGGCTGGACCAGCTAGCTGCAGCTGAGGGGGTAAACCTCATATCTAAAGTCCTGGCGGACATGTCCCACAGCTTCATCACCTTCCCAGGCAGCTATGATGACCGTATGGGTGTAGCTCAGGGATTTAAAAACATCAGTGGCATCCCAAACGTGGTGGGAGTCCTGGGCTGTTTACATGTAAGAGTGACACctcctcctactactactactactacagaaAGCCTCTACCTCAACCCTCTGGGTTACAATTCAGTGATGATGCAGATCATCAGTGATGTGGATGGAAATCTGCTcagtgttgagcagtgttgtCCTGGGGGCACTCTGGAAAAGACTGTTTGGGAAAAGTCCAACATTTACCAGGAGTTCATCAATTTCCAGCATGGCCAGACATGGCTTGTTGGTGGCAAAGGGCTGCCTCAAAGTAGGCACATGTTGACTCCTGTGCAGCGCACTCAAAGCAAGACCAGTGCAGCCGAACGTTTCAATGCTGCTCATTCTGCGCTCCTGAGCTCCAATCAGCACGTTATTGGTTGTCTGAAAACCCGTTTCCAGTGCCTGCACGGACTTGGAGCTGTGCAGGCCAACAAGCTTGAGACATTCAGCCGTATTATCACAGCTTGTTGCGTGCTTCACAACATCTATAAGAAATTCTCTGTGCCACTACCCAGAGAGCCGGTGTTGGAGCCTCTACCCCCAGTTCAAGTGAGGAAAGAAGGGGAGGAGAAATCCTTTTGCTACATGGGAGAGACACAAGAAGACATGATAGAAATGTGTTTTGGTAATGATGGAGATTAGCAGGTGCAGGACCAGAAAAAGGACATCGAGGAGAGGAGCAAACAAACTTGGGTCTGTTAAAAGGATTTTGCCAAATGTGTTACAGATGGAGGACGGGTGTGTATTTTGGGTctgttttgctaaaaaaaaaaaaaaaaaatactttggaCAAAGTGGACATGACGTAGTAAAAAATCATCTCCATCTCACCCAAACGAGGTGATATAAGAAGAACAGATGCTGCTTTTATAGCGCTCCATGCTCCTCACAGTAGTACAGAAGTAGCTCACACAGTTGCCTTATTTCTATTAGGTCACAATTAAACTGATTTATTGTTTCTATAGGTCTGCTCAAATTGTGATTCTGATTTCACTATGTGAACCATAATAGTGTGAAATGCAGTTTTACACATATAtaggaatatttttatttaagtcaATGCAGTTGCAGTAACCATTATAGAGACAGCAGTTGTGTGTTACAAAAACGGAGCATGTGAACACCCATTGCAGTATGCATCCATTCTGCCATTCACAATATAAACCTTTCATCAGGTATGGCTATACTTActgtttatgttaaaaaataaaagtattatgCATCTGTAATGTTAGcagaaatatatcatataaaatatgtttaagagTATAAACCAATCTTTACATTGCTAcctcttttgccttttttttaagtacaataaCACAGTGGCATTGTTGCTGTATTTGTTGTCAGAAACTTTTGATAGAAGTTTGTGAGCAGTAATGGTTACATTTGATATGGATGAATTCATTTTTGTAGATAAAGGTAGTATAAATGAGCCTTGAAGATAA

Function

NR:

description
putative nuclease HARBI1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007260049.3 True 2491 mRNA 0.40 2 8975458 8979077
XM_022680071.1 False 2243 mRNA 0.44 3 8975458 8979617
XM_022680076.1 False 2197 mRNA 0.44 3 8975458 8979618
XM_022680081.1 False 2175 mRNA 0.44 3 8975458 8979618

Neighbor

gene id symbol gene type direction distance location
LOC103030846 LOC108426561,LOC103358366,LOC104935909 coding downstream 98333 8873882 ~ 8877125 (-)
LOC103029888 LOC103029888,LOC108426543,LOC107664666,LOC107550022,LOC107742254,LOC100704658 coding downstream 143537 8813024 ~ 8831921 (-)
LOC103028623 LOC108426558,LOC108256678,LOC107655803,LOC107755711,LOC107557242,LOC105028465,LOC107550020,LOC107664669,LOC107742255 coding downstream 199211 8746885 ~ 8776247 (-)
LOC103037764 laptm4b,LOC103037764,LOC108414450,LOC106579220,LOC106605533 coding downstream 318584 8645276 ~ 8656874 (-)
matn2 NA coding downstream 331026 8630223 ~ 8644432 (-)
txndc5 txndc5,LOC107730007 coding upstream 91764 9071382 ~ 9084286 (-)
bloc1s5 bloc1s5 coding upstream 129396 9109014 ~ 9113905 (-)
gcm2 gcm2,LOC107552658,LOC107664656,LOC107707735,LOC107654664 coding upstream 1091460 10071078 ~ 10078582 (-)
elovl2 elovl2,LOC101268971 coding upstream 1123561 10103179 ~ 10118608 (-)
mppe1 mppe1 coding upstream 1251895 10231513 ~ 10257873 (-)
G17558 NA non-coding downstream 14618 8911970 ~ 8960840 (-)
G17536 NA non-coding downstream 163979 8793865 ~ 8811479 (-)
G17532 NA non-coding downstream 187171 8746380 ~ 8788287 (-)
G17514 NA non-coding downstream 302281 8668990 ~ 8673177 (-)
G17326 hus1 non-coding downstream 816073 8148967 ~ 8159385 (-)
G17585 NA non-coding upstream 4743 8984361 ~ 8985654 (-)
G17589 NA non-coding upstream 18482 8998100 ~ 9442767 (-)
G17600 NA non-coding upstream 88417 9068035 ~ 9157978 (-)
G17599 NA non-coding upstream 124946 9104564 ~ 9108428 (-)
G17640 NA non-coding upstream 583433 9563051 ~ 9563268 (-)
LOC111188216 NA other downstream 89141 8861134 ~ 8886317 (-)
LOC103026934 ahrr,LOC108431062 other downstream 967838 7924929 ~ 8007620 (-)
sec61b sec61b,LOC102796100 other downstream 2431183 6534859 ~ 6544275 (-)
LOC111191940 NA other downstream 2612453 6354945 ~ 6363005 (-)
LOC103024654 NA other downstream 2865175 6105816 ~ 6110283 (-)
G17638 NA other upstream 582809 9562427 ~ 9562725 (-)
mak mak other upstream 1015527 9995145 ~ 10009151 (-)
G17792 NA other upstream 1267057 10246675 ~ 10247318 (-)
LOC103047439 zswim7,LOC107665024,LOC107712139,LOC107740465,LOC107688637,LOC107731017 other upstream 2036411 11016029 ~ 11080184 (-)
LOC107197924 NA other upstream 2096620 11076238 ~ 11083799 (-)

Expression


Co-expression Network