Item | Value |
---|---|
gene id | tfap2a |
gene name | tfap2a,LOC107664660,LOC107671378 |
gene type | coding |
species | mexican tetra (Astyanax mexicanus) |
category of species | ornamental fish |
Item | Value |
---|---|
chromosome id | NC_035899.1 |
NCBI id | CM008302.1 |
chromosome length | 74127438 |
location | 9119404 ~ 9132136 (+) |
genome version | Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome |
symbol | description |
---|---|
tfap2a | Enables DNA-binding transcription factor activity, RNA polymerase II-specific. Acts upstream of or within several processes, including animal organ development; iridophore differentiation; and nervous system development. Located in nucleus. Is expressed in several structures, including ectoderm; nervous system; neural crest; neural tube; and pronephros. Human ortholog(s) of this gene implicated in branchiooculofacial syndrome. Orthologous to human TFAP2A (transcription factor AP-2 alpha). |
description |
---|
PREDICTED: transcription factor AP-2-alpha isoform X6 |
id | name | namespace |
---|---|---|
GO:0006355 | regulation of transcription, DNA-templated | biological_process |
GO:0050935 | iridophore differentiation | biological_process |
GO:0030182 | neuron differentiation | biological_process |
GO:0051216 | cartilage development | biological_process |
GO:0014032 | neural crest cell development | biological_process |
GO:0014036 | neural crest cell fate specification | biological_process |
GO:0060788 | ectodermal placode formation | biological_process |
GO:0030318 | melanocyte differentiation | biological_process |
GO:0007422 | peripheral nervous system development | biological_process |
GO:0030902 | hindbrain development | biological_process |
GO:0048701 | embryonic cranial skeleton morphogenesis | biological_process |
GO:0060041 | retina development in camera-type eye | biological_process |
GO:0005634 | nucleus | cellular_component |
GO:0003700 | DNA-binding transcription factor activity | molecular_function |
id | description |
---|---|
K09176 | TFAP2A_B; transcription factor AP-2 alpha/beta |
RNA id | representative | length | rna type | GC content | exon number | start site | end site |
---|---|---|---|---|---|---|---|
XM_007260058.3 | False | 2576 | mRNA | 0.45 | 7 | 9123671 | 9132136 |
XM_007260059.3 | False | 2642 | mRNA | 0.46 | 7 | 9121340 | 9132136 |
XM_007260060.3 | False | 2603 | mRNA | 0.46 | 7 | 9119404 | 9132136 |
XM_007260061.3 | True | 3156 | mRNA | 0.45 | 7 | 9122953 | 9132136 |
gene id | symbol | gene type | direction | distance | location |
---|---|---|---|---|---|
bmp6 | bmp6 | coding | upstream | 50473 | 9009246 ~ 9068931 (+) |
LOC103046631 | zgc:101569,LOC107678482,LOC107730011,LOC107557244 | coding | upstream | 113574 | 8981004 ~ 9005830 (+) |
LOC103021367 | NA | coding | upstream | 145366 | 8932684 ~ 8974038 (+) |
LOC111191981 | NA | coding | upstream | 197673 | 8904081 ~ 8921731 (+) |
LOC111191975 | NA | coding | upstream | 217150 | 8900225 ~ 8902254 (+) |
LOC103030214 | NA | coding | downstream | 179654 | 9311790 ~ 9482091 (+) |
slc35b3 | slc35b3,LOC107730012,LOC107667423 | coding | downstream | 688825 | 9820961 ~ 9836628 (+) |
eef1e1 | eef1e1,LOC107664672,LOC107572674,LOC107730010,LOC107678551 | coding | downstream | 805625 | 9937761 ~ 9954129 (+) |
LOC103024812 | NA | coding | downstream | 848470 | 9980606 ~ 9989518 (+) |
tmem14c | tmem14c,tm14c,tmem14ca,LOC107671380 | coding | downstream | 859270 | 9991406 ~ 9995040 (+) |
G17474 | txndc5,LOC107730007,LOC107557239,LOC107678545 | non-coding | upstream | 34962 | 9082088 ~ 9084442 (+) |
LOC111194882 | NA | non-coding | upstream | 44905 | 9073494 ~ 9074499 (+) |
LOC111194870 | NA | non-coding | upstream | 187644 | 8928692 ~ 8931760 (+) |
G17442 | LOC108426561,LOC103358366,LOC104935909 | non-coding | upstream | 242278 | 8872932 ~ 8877126 (+) |
G17433 | LOC102796188,LOC108256678,LOC101465343,LOC103355494,LOC100690057 | non-coding | upstream | 345641 | 8771847 ~ 8773763 (+) |
G17496 | NA | non-coding | downstream | 71253 | 9203389 ~ 9215506 (+) |
G17632 | NA | non-coding | downstream | 350266 | 9482402 ~ 9482708 (+) |
G17637 | NA | non-coding | downstream | 430292 | 9562428 ~ 9562725 (+) |
G17643 | NA | non-coding | downstream | 454522 | 9586658 ~ 9586872 (+) |
G17679 | NA | non-coding | downstream | 713878 | 9846014 ~ 9846301 (+) |
G17443 | NA | other | upstream | 169245 | 8916586 ~ 8950159 (+) |
LOC111191978 | NA | other | upstream | 215400 | 8899940 ~ 8904004 (+) |
LOC111191971 | NA | other | upstream | 219759 | 8891244 ~ 8899645 (+) |
G17414 | NA | other | upstream | 402617 | 8675619 ~ 8716787 (+) |
LOC103041197 | NA | other | upstream | 934567 | 8168839 ~ 8184837 (+) |
G17745 | NA | other | downstream | 1149088 | 10281224 ~ 10281976 (+) |
G17904 | abr | other | downstream | 2045772 | 11177908 ~ 11190080 (+) |
G18332 | LOC107710578 | other | downstream | 3835427 | 12967563 ~ 12975106 (+) |
G18386 | gjd1a,LOC103027887,LOC108437049,LOC107700241,LOC107548473,LOC107746368 | other | downstream | 3912695 | 13044831 ~ 13074453 (+) |
LOC103028202 | h3f3b,LOC105891059,LOC107572204,LOC105909691,LOC101073377,LOC105888650,LOC107388308 | other | downstream | 3964574 | 13096710 ~ 13128508 (+) |