slc35b3 (slc35b3,LOC107730012,LOC107667423)


Basic Information

Item Value
gene id slc35b3
gene name slc35b3,LOC107730012,LOC107667423
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 9820961 ~ 9836628 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007260062.3
CCGCGTGTTCAGGTCAGAGGTCCACATACACAGGAAGCGGTTGGCAGCTTTAGCAGTAGGGCTAAACTGTAGAAAAATTAAGGGGGTGAAGCGGCTCTAGAGCGGCTCAGTAACTCAGGCGGGCTGCGGGAATGATACCGCGAGCCTGTAAAGACGAGCAGCTGCCGGTGGCTCCGAGGTGGCGGGGTTAAACCCGGAGGAACGGCCGCGCTGCTGCTCTCTGTACCGGATACTGGGCTCGGCGGTGTATTAGCCGGTTAGCCGCTAGCTGCTGTTCTCCCGGTgtttactatattatatatagccTTACATGATGTGGTGTCGGGTTTATCTATGGTTCAGGAAGAGCTCGGCGCGCTGCCTCGGCTTTACTGTGTTAAATTAGCGGGTAATATAGTTaaatgtgggtgtgtgtggatgtTCTGGCGGGGCTGGTTTATTATGAAGTGCCTTACAGGCCGTGTGATATGAGCTCAGCCCTCTGATGCCTCCCACGGATTCACTTAATACTGAACACCTCTGTCTTTAGTTCAGGAGCCCACATACACGATGAGTTCCAAATTCGGCTTGATCAACTACAACTCCCGAAAAcacatctccatctccatcccCTCTTCTACAGAGGTGATGTCCCCGCATATCAAATCCGTAGAGGAGCTCAAAGTGCTGGGGATCAACCTGAGCAGTTTCAACACTCCAACACAGTTCTTCATTTGTGTGGCTGGAGTTTTTGTCTTTTACCTCATCTATGGGTACTTGCAGGAGCTGATCTTTTCAGTAGAAGGATTTAAGCCTTTTGGCTGGTACCTCACCCTCGTTCAGTTTGGGTTCTACTCTGTGTTTGGCCTGGTAGAGCTGCAGCTTACCCAGGACAAGCGGAGGAGgaTCCCAGGAAAAACATATATGATCATAGCATTTCTAACGGTTGGGACCATGGGCCTTTCCAACACATCACTGGGATACTTGAACTATCCGACGCAAGTCATCTTCAAGTGCTGCAAACTCATTCCAGTTATGATTGGAGGAGTTTTCATACAAGGGAAACGGTACAACATTGCAGATGTGTCTGCTGCTCTGTGCATGAGCCTGGGCCTCATCTGGTTCACTCTGGCCGACAGCAAGGTTGCACCAAACTTCAATGTGACAGGGGTTATCCTTATTTCTCTGGCACTTTGTGCCGATGCTGCTATTGGGAACGTGCAGGAAAAAGCCATGAAATTGCACAATGGATCCAACTCAGAAATGGTTTTATATTCCTACTCTATTGGGTTTGTGTATATTCTCCTGGGACTTCTGTGTATTGGTGGATTGGGTCCTGCTGTGGCCTTCTGTGCTCAGCATCCAGTGACTACATACGGCTACGCgttcttcttttctctcaccGGCTACTTTGGCATCTCTTTTGTTCTGGCCTTGATAAAGCTCTTTGGAGCGCTGGTAGCAGTCACAGTTACAACAGGAAGAAAGGCCATGACGATCGTCTTGTCGTTTTTATTCTTCACAAAACCTTTCACATTTCAGTACATATGGGGAGGCCTGCTGGTAGTCTTTGGGATCTTCCTCAATGTCTACAGCAAAAACAGGGACAAAATGAAGCTTCCCTCGTTTGCAGAGCTCCGGAATCGAGTTCTCAGTGCCAAGAAGGGCCGAGCGCTCTCTCAGACTGTTTAAACAGACCTGACGGATCTCCACCTGAGTGGACTGGCCACGTCATAATGAGCTGGACCTGACGACTTGCTGTCACGTCCTGAAACATCAGGAGCTTTCGAGGACAGAGCAATGGACGACATGGatgctgctgttgttttgttttttgtttttttagccaAATTGCAAAGTTTTGCACTGGCCTAAGCCTACCTGGGCTTTGGTGGAGAACTCATATGGTGAAAGGAGCTCCAACAGTCTCATCATGTCCAGAAGAAGGGGTTGCCGATTGAAGGGAATCACTGTTGTAACGGATTCTAACGTTgtaactctctctttcacctGCATGTGCCGGCAGAATGATGGCATCCTCTGAGACGGAAAGAAGTCAGTCATTTCCAAACgcgtttgttttatttaactgtGATTAGACAGGGAACATGGGAAGCTACACGTCGGCAGTTTTGAAAGGTCGACGTTTGGGAGTGTATCAGTGTGTCGGCTGCCATATTCGCTATCCATTTGTTTGGTGAAAGGGTAgctctttttacattaaaaacaaactgGGAAGTTTA
>XM_022680180.1
CCCTCCTGAATCTACAGTGCTGTGCTTTGGAGTAGCTGGGTTAATTAACTAGCTACAAGCATCAGGAGCCCACATACACGATGAGTTCCAAATTCGGCTTGATCAACTACAACTCCCGAAAAcacatctccatctccatcccCTCTTCTACAGAGGTGATGTCCCCGCATATCAAATCCGTAGAGGAGCTCAAAGTGCTGGGGATCAACCTGAGCAGTTTCAACACTCCAACACAGTTCTTCATTTGTGTGGCTGGAGTTTTTGTCTTTTACCTCATCTATGGGTACTTGCAGGAGCTGATCTTTTCAGTAGAAGGATTTAAGCCTTTTGGCTGGTACCTCACCCTCGTTCAGTTTGGGTTCTACTCTGTGTTTGGCCTGGTAGAGCTGCAGCTTACCCAGGACAAGCGGAGGAGgaTCCCAGGAAAAACATATATGATCATAGCATTTCTAACGGTTGGGACCATGGGCCTTTCCAACACATCACTGGGATACTTGAACTATCCGACGCAAGTCATCTTCAAGTGCTGCAAACTCATTCCAGTTATGATTGGAGGAGTTTTCATACAAGGGAAACGGTACAACATTGCAGATGTGTCTGCTGCTCTGTGCATGAGCCTGGGCCTCATCTGGTTCACTCTGGCCGACAGCAAGGTTGCACCAAACTTCAATGTGACAGGGGTTATCCTTATTTCTCTGGCACTTTGTGCCGATGCTGCTATTGGGAACGTGCAGGAAAAAGCCATGAAATTGCACAATGGATCCAACTCAGAAATGGTTTTATATTCCTACTCTATTGGGTTTGTGTATATTCTCCTGGGACTTCTGTGTATTGGTGGATTGGGTCCTGCTGTGGCCTTCTGTGCTCAGCATCCAGTGACTACATACGGCTACGCgttcttcttttctctcaccGGCTACTTTGGCATCTCTTTTGTTCTGGCCTTGATAAAGCTCTTTGGAGCGCTGGTAGCAGTCACAGTTACAACAGGAAGAAAGGCCATGACGATCGTCTTGTCGTTTTTATTCTTCACAAAACCTTTCACATTTCAGTACATATGGGGAGGCCTGCTGGTAGTCTTTGGGATCTTCCTCAATGTCTACAGCAAAAACAGGGACAAAATGAAGCTTCCCTCGTTTGCAGAGCTCCGGAATCGAGTTCTCAGTGCCAAGAAGGGCCGAGCGCTCTCTCAGACTGTTTAAACAGACCTGACGGATCTCCACCTGAGTGGACTGGCCACGTCATAATGAGCTGGACCTGACGACTTGCTGTCACGTCCTGAAACATCAGGAGCTTTCGAGGACAGAGCAATGGACGACATGGatgctgctgttgttttgttttttgtttttttagccaAATTGCAAAGTTTTGCACTGGCCTAAGCCTACCTGGGCTTTGGTGGAGAACTCATATGGTGAAAGGAGCTCCAACAGTCTCATCATGTCCAGAAGAAGGGGTTGCCGATTGAAGGGAATCACTGTTGTAACGGATTCTAACGTTgtaactctctctttcacctGCATGTGCCGGCAGAATGATGGCATCCTCTGAGACGGAAAGAAGTCAGTCATTTCCAAACgcgtttgttttatttaactgtGATTAGACAGGGAACATGGGAAGCTACACGTCGGCAGTTTTGAAAGGTCGACGTTTGGGAGTGTATCAGTGTGTCGGCTGCCATATTCGCTATCCATTTGTTTGGTGAAAGGGTAgctctttttacattaaaaacaaactgGGAAGTTTA

Function

symbol description
slc35b3 Predicted to enable 3'-phosphoadenosine 5'-phosphosulfate transmembrane transporter activity. Predicted to act upstream of or within transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of Golgi membrane and integral component of endoplasmic reticulum membrane. Orthologous to human SLC35B3 (solute carrier family 35 member B3).

NR:

description
adenosine 3'-phospho 5'-phosphosulfate transporter 2 isoform X1

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K15277 SLC35B3, PAPST2; solute carrier family 35 (adenosine 3'-phospho 5'-phosphosulfate transporter), member B3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007260062.3 True 2222 mRNA 0.48 10 9820961 9836628
XM_022680180.1 False 1753 mRNA 0.47 10 9821541 9836628

Neighbor

gene id symbol gene type direction distance location
LOC103030214 NA coding upstream 338870 9311790 ~ 9482091 (+)
tfap2a tfap2a,LOC107664660,LOC107671378 coding upstream 688825 9119404 ~ 9132136 (+)
bmp6 bmp6 coding upstream 752030 9009246 ~ 9068931 (+)
LOC103046631 zgc:101569,LOC107678482,LOC107730011,LOC107557244 coding upstream 815131 8981004 ~ 9005830 (+)
LOC103021367 NA coding upstream 846923 8932684 ~ 8974038 (+)
eef1e1 eef1e1,LOC107664672,LOC107572674,LOC107730010,LOC107678551 coding downstream 101133 9937761 ~ 9954129 (+)
LOC103024812 NA coding downstream 143978 9980606 ~ 9989518 (+)
tmem14c tmem14c,tm14c,tmem14ca,LOC107671380 coding downstream 154778 9991406 ~ 9995040 (+)
sycp2l NA coding downstream 243963 10080591 ~ 10101407 (+)
LOC103027767 gnal,LOC108426578,LOC106590334,LOC106579638 coding downstream 307456 10144084 ~ 10227332 (+)
G17643 NA non-coding upstream 234089 9586658 ~ 9586872 (+)
G17637 NA non-coding upstream 258236 9562428 ~ 9562725 (+)
G17632 NA non-coding upstream 338253 9482402 ~ 9482708 (+)
G17496 NA non-coding upstream 605455 9203389 ~ 9215506 (+)
G17474 txndc5,LOC107730007,LOC107557239,LOC107678545 non-coding upstream 736519 9082088 ~ 9084442 (+)
G17679 NA non-coding downstream 9386 9846014 ~ 9846301 (+)
G17685 NA non-coding downstream 51238 9887866 ~ 9888378 (+)
G17709 NA non-coding downstream 171162 10007790 ~ 10008795 (+)
G17735 NA non-coding downstream 409956 10246584 ~ 10247321 (+)
G17739 NA non-coding downstream 422390 10259018 ~ 10259526 (+)
G17443 NA other upstream 870802 8916586 ~ 8950159 (+)
LOC111191978 NA other upstream 916957 8899940 ~ 8904004 (+)
LOC111191971 NA other upstream 921316 8891244 ~ 8899645 (+)
G17414 NA other upstream 1104174 8675619 ~ 8716787 (+)
LOC103041197 NA other upstream 1636124 8168839 ~ 8184837 (+)
G17745 NA other downstream 444596 10281224 ~ 10281976 (+)
G17904 abr other downstream 1341280 11177908 ~ 11190080 (+)
G18332 LOC107710578 other downstream 3130935 12967563 ~ 12975106 (+)
G18386 gjd1a,LOC103027887,LOC108437049,LOC107700241,LOC107548473,LOC107746368 other downstream 3208203 13044831 ~ 13074453 (+)
LOC103028202 h3f3b,LOC105891059,LOC107572204,LOC105909691,LOC101073377,LOC105888650,LOC107388308 other downstream 3260082 13096710 ~ 13128508 (+)

Expression


Co-expression Network