eef1e1 (eef1e1,LOC107664672,LOC107572674,LOC107730010,LOC107678551)


Basic Information

Item Value
gene id eef1e1
gene name eef1e1,LOC107664672,LOC107572674,LOC107730010,LOC107678551
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 9937761 ~ 9954129 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007260063.3
CGCGCTGATCCGGCTTTCCTGTTTCGGCAAACATGGCGCTGAGAGAGCTGTCCTCGCTGGAGAAGTGCCTGGGCCTGAAAAAGCCGAATAAATACAGCACGCAGGGAGAGCGGAAGgTCCCTGTTCTGCAAAACAACAATGGCCCAGCAGTGGTTGGTCTGGTGACCATAGCCTCCAGCCTGGTCCGAGATGCCAAGAAGACAGAGCTGCTGGGGAACACTGCTGAGCAGAGAGCGGTGGTTCAACAGTGGCTGGAGTACAGAGTAACCCGTCTGGATAGCTGCACTAAAGATGAGGTCAAGGTCATACTTAAGGAACTTAACCATTACCTGGAGGATAAGGTGTATCTGGCTGGGAACAGCTTTACTCTGGCAGATGTTCTGATGTACTATGGCATCCATTACATCATTATGGAGCTGGCGGTTCAGGAGAAGGAGAAGTATTTAAACGTGACCCGGTGGTTTGACCACATCCAGCACTACCCGGGAGTGCGTCACCACCTGCCCCCTGTGGTAGTTCTCAGGAACAGAGTGTACCCCAGCGGCCAGCACTGACCCCCCGCCCACCTCTGATACCAGGCAGCGTGGTAATTGTGGCCGGGCCTTGGGGCCTCCATCCTTACCCCTTATCCTTCACTGCACTGCCCTCCCTGCAAGATAGGCTTTCTGGAGCGCAACACTGGGGGCATTTCAGATGTTTGGGGCAAGACAAACGGACTGCCTGAATTGTTAGTTTTCTGTGTCTTTATGTAttgagagttttgttttttgtttattttattttttttcccttaagtTTTAACCTTGTGTGTCACATTGTGGTGAGTGTATTTATAAGGGATGGAATACAACAGTATAGTTACATACAAAGGGAAAAAATGGGCAggtactgattattaataaattaactttattaacaattaattaaGCAGGAAGGTAAAGATGAAGGAGAAGGCAGAAGAAAGCACTAATATAACAGTCAGCTAGGTGTCTACAGAGGAACAAGGACTTGACgagacaaaatattttttttaaaataaaatctggatAAGTGGCTTCTAACGACAGAATACAACACTATTTATTAGTGGTCTGGGTGTagaaacaacacaaaatgagTCACTGCCTGACACCAATCCTTACAACTAAAATCAATACTGCTTTTTGAGaatttatacagtattgcaaatgtaaatattgcaatactatacaatattaataaaattaatgtactgtaattgAAGCAGGCTTAGACATACCAAGACCTTTAAATACAGCAAAATTCGTCCATTTCATTCTGTCTGAGtctactttagttttttttttttttctttcccactCCTTCCTCTCACGCTCGTTCCCCTCTCAGCAGCAGTACCAGTAGTTGTGTGGGCAGCGTGGAGTGGTTAGCCCGGCTTGGCATGTTTGTGCTGTGGGGCAGAGGGCAGGCTACCAGCTGCAGCGGGCAAGGCAGCCTCCACAACTAGCCAGCTGCCGGCAGCGACAACCACGCACTGTACGTCATTTCACCCACAGTCCCCCGCTCTGCTGCCCTGGGCTGGAAAATCCTATTGTGACACAACACtccagcagttttttttttttcttctttccagCTCAATCCTACTGGGTACTGGCGGAAGCATTCGCATTTTCTATAGCGTGAATATATAAAGATCTCACATATACAGTTCCAGTTAATTCCTGAGTTCTCAGTTCAAGACAAGGTGCTTTCTTTGAGCTTGTTGTTACATAGGATATTGTATGTGTAGTTATTAATattgaaaaagaagagaagatgaAATTTCAGGGGCGCGCAGCTCTCATACAAAGGGAGATTTATTGTTTGAGCTCGCGTGTATTTGAAAAATGTCGTCTTGATCAGATTTGAGCCAGTTTCTTCAATGCGCACCATGTGGCCAGGCTGCTTTGGAGCCATCCTGTCCGCAGTCTTTGCGCTGGAAAATCCTCTGGTAATGAAAGTTGGGAAAGCAGTCCCGTTGCTCGTTCACCTATCTGCTGTGCATATGCTGACAAACATCCCTCTgttctttttattgtatttccTCTCACGTAAGCCTCCTTTATGAAACGCTGCTGCTCCCAAGCCCAAGTTTGTTATTTAATGTCAACAGAAACTTGTCTTGTGCCAATAAACggaagaaaaaagggaaatcaCAGAACTTT

Function

symbol description
eef1e1 Predicted to act upstream of or within positive regulation of DNA damage response, signal transduction by p53 class mediator. Predicted to be part of aminoacyl-tRNA synthetase multienzyme complex. Orthologous to human EEF1E1 (eukaryotic translation elongation factor 1 epsilon 1).

NR:

description
eukaryotic translation elongation factor 1 epsilon-1 isoform X2

GO:

id name namespace
GO:0006414 translational elongation biological_process
GO:0003746 translation elongation factor activity molecular_function

KEGG:

id description
K15439 EEF1E1, AIMP3; eukaryotic translation elongation factor 1 epsilon-1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007260063.3 True 2186 mRNA 0.45 4 9937761 9954129

Neighbor

gene id symbol gene type direction distance location
slc35b3 slc35b3,LOC107730012,LOC107667423 coding upstream 101133 9820961 ~ 9836628 (+)
LOC103030214 NA coding upstream 455670 9311790 ~ 9482091 (+)
tfap2a tfap2a,LOC107664660,LOC107671378 coding upstream 805625 9119404 ~ 9132136 (+)
bmp6 bmp6 coding upstream 868830 9009246 ~ 9068931 (+)
LOC103046631 zgc:101569,LOC107678482,LOC107730011,LOC107557244 coding upstream 931931 8981004 ~ 9005830 (+)
LOC103024812 NA coding downstream 26477 9980606 ~ 9989518 (+)
tmem14c tmem14c,tm14c,tmem14ca,LOC107671380 coding downstream 37277 9991406 ~ 9995040 (+)
sycp2l NA coding downstream 126462 10080591 ~ 10101407 (+)
LOC103027767 gnal,LOC108426578,LOC106590334,LOC106579638 coding downstream 189955 10144084 ~ 10227332 (+)
LOC103028717 impa1,LOC103028717,LOC107085441,LOC100708678,LOC102192612,LOC102777947,LOC101479609,LOC103356684,LOC108415234 coding downstream 386365 10340494 ~ 10350048 (+)
G17685 NA non-coding upstream 49383 9887866 ~ 9888378 (+)
G17679 NA non-coding upstream 91460 9846014 ~ 9846301 (+)
G17643 NA non-coding upstream 350889 9586658 ~ 9586872 (+)
G17637 NA non-coding upstream 375036 9562428 ~ 9562725 (+)
G17632 NA non-coding upstream 455053 9482402 ~ 9482708 (+)
G17709 NA non-coding downstream 53661 10007790 ~ 10008795 (+)
G17735 NA non-coding downstream 292455 10246584 ~ 10247321 (+)
G17739 NA non-coding downstream 304889 10259018 ~ 10259526 (+)
G17742 NA non-coding downstream 315392 10269521 ~ 10270290 (+)
G17751 NA non-coding downstream 355936 10310065 ~ 10330395 (+)
G17443 NA other upstream 987602 8916586 ~ 8950159 (+)
LOC111191978 NA other upstream 1033757 8899940 ~ 8904004 (+)
LOC111191971 NA other upstream 1038116 8891244 ~ 8899645 (+)
G17414 NA other upstream 1220974 8675619 ~ 8716787 (+)
LOC103041197 NA other upstream 1752924 8168839 ~ 8184837 (+)
G17745 NA other downstream 327095 10281224 ~ 10281976 (+)
G17904 abr other downstream 1223779 11177908 ~ 11190080 (+)
G18332 LOC107710578 other downstream 3013434 12967563 ~ 12975106 (+)
G18386 gjd1a,LOC103027887,LOC108437049,LOC107700241,LOC107548473,LOC107746368 other downstream 3090702 13044831 ~ 13074453 (+)
LOC103028202 h3f3b,LOC105891059,LOC107572204,LOC105909691,LOC101073377,LOC105888650,LOC107388308 other downstream 3142581 13096710 ~ 13128508 (+)

Expression


Co-expression Network