elovl2 (elovl2,LOC101268971)


Basic Information

Item Value
gene id elovl2
gene name elovl2,LOC101268971
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 10103179 ~ 10118608 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007260074.3
GAATGCATTATTAAATCTCAGGTCTTTCAGATAGACCCGGAGTAAAAGAGTGCGGTGGGCGGGGCCGGGGTGGGCGAAGCTCCGCCCGCAAACACAAAAATCCTGTCGGGCTGACCGCTCGTAACACCGGCGTGCAGGACCGCAGGCGGGCGCATGCTATACCGAAAGAGGCGCATAGAGGCGCGGCGAGGAAACAACGGCCATCCAGGACCACCGAGCGGCATCCTCATCCATCCCAGAGCTACGCAACACACACAGCCTTAACATGGAGCTCGTGAAATACTATCACACCGTCGACACGTGGGTCAACGCTGCAGTGGATTATCAATTTGGAGAGAGAGATCCGAGAGTACGAGGATGGCTGATGTTGGACTCCTGCACACCTACCCTGATCCTCACCTTCATCTACCTCCTAATAGTCTACCTGGGACCAAAGTACATGAAGAATCGGCCAGCATACTCGCTAAAGAATGTTCTACAACTCTACAACTTCGTAGTCACCATGCTCTCACTCTATATGCTGGTAGAGCTAATTTCAGCAACCTGGTCAGCGGGATACCGCCTGAAATGTCAAGCCCTTTTTGAAGCAGGGGAGGGTGATGTCAGGGTGGCAAAAGTGCTGTGGTGGTACTACTTTTCCAAGCTAATAGAGTTTCTGGACACCATCTTCTTTGTTCTGAGGAAAAAGAACAATCAGATCACCTTCCTGCACGTGTATCACCATGCCTCCATGTTTAATATCTGGTGGTGCGTCCTCAATTGGATCCCTTGTGGACAAAgTTTCTTTGGGCCCATGCTGAACAGTTTCATCCATGTGCTGATGTACTCGTACTACGGGCTGTCCACCATCCCCTCCATGCAGAAGTACCTGTGGTGGAAACGCTACCTCACACAAGCTCAGCTGATCCAGTTTATATTAACTATAACGCACACTCTCAGTGCAGCAGTTTTCCCCTGCGGATTCCCCTTTGGCTGCCTGATGTTTCAGTCCAGCTACATGGTCACACTTGTCATCTTGTTTGTCAATTTCTATTTGAAGACATACAGAAAAAGGCCAGCAAGAGATGACAAAGATGCAGAGAAGGCGAAAAATCACACGAATGGCGTCTCGTCCAGCCTCAACGGAGCCAAACATAAGCTACAGTAAACTAAAGGAGAGAACTTTTTAATATTCATATTCTCAAACCGATTATGCTGAGACACTAATCTGATAGCAGGGATAATCTTCTATAATTATGCTGTAATTTTTGTatagaatactttttttaaccCTCCTTTTTGTACCATGTTTTGGTTTATTCCTCTGAAGACTTGACAGTAACTCAATATTCTGGGCATTCTGAAGTCGTAGTCAGAATCACTgtttatgtatacatatatttatcacAGCAAATCATAGTCCATCATTCACAATTCCATTTGTCTTATTTGTCTGAACTAATCCTCCACTGATTACCACCGAAGTATTGTTGAGAGAACCGCTGTCTGAAAGATGCCTTAGAGCTCAGTTATTTTAGTAATGTGAGGAAGAATGTTTGGTAAAGAAGCTGTGAATGTTCGTAAGCATGTCTTTGTGCATTCATAACAGCAGTGCCTTGTGGAAGTGTtcgaaacaaaacaaaaaacgttGGCTGTTATTATAGATTTCTTTTGCCATGTTATACATTGCATACATTgcatttttctcagttttttttagatgcatttCAATTTATTCATGCACCCCTCAATTAACCCCTTAATTATGGCCTTGTTTCCCCAAAGCATCCAGATGTTAAGATAAGGTTGATGCTTTGTGGTGTTTGTCACAGTAACAGTTATCAGGATTTGGGGGGCTTTATGAACTCCTTTTTAGGGCATTGTTTGTAAATGtggttttatatagtataatctTTCATGGACAGCAGTACAACAGATTGTAgccttttatttacatttacttactCAAGGGTAGCTCTAAGCCTTTATAACTAAACTAagcctttataaaaaaaacattcacatgTCTATATGGAATTTTgtttcaaatgtatttaatattttacaattcTGCATAGTTTTG

Function

symbol description
elovl2 Predicted to enable fatty acid elongase activity. Acts upstream of or within very long-chain fatty acid biosynthetic process. Predicted to be located in endoplasmic reticulum and membrane. Predicted to be integral component of membrane. Predicted to be integral component of endoplasmic reticulum membrane. Is expressed in several structures, including fat cell; head; liver; pleuroperitoneal region; and yolk syncytial layer. Orthologous to human ELOVL2 (ELOVL fatty acid elongase 2).

NR:

description
PREDICTED: elongation of very long chain fatty acids protein 2

GO:

id name namespace
GO:0042761 very long-chain fatty acid biosynthetic process biological_process
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K10205 ELOVL2; elongation of very long chain fatty acids protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007260074.3 True 2062 mRNA 0.43 8 10103179 10118608

Neighbor

gene id symbol gene type direction distance location
gcm2 gcm2,LOC107552658,LOC107664656,LOC107707735,LOC107654664 coding downstream 24597 10071078 ~ 10078582 (-)
bloc1s5 bloc1s5 coding downstream 989274 9109014 ~ 9113905 (-)
txndc5 txndc5,LOC107730007 coding downstream 1018893 9071382 ~ 9084286 (-)
LOC103047134 LOC103047134 coding downstream 1123561 8975458 ~ 8979618 (-)
LOC103030846 LOC108426561,LOC103358366,LOC104935909 coding downstream 1226054 8873882 ~ 8877125 (-)
mppe1 mppe1 coding upstream 112905 10231513 ~ 10257873 (-)
LOC103028097 tnip3 coding upstream 149050 10267658 ~ 10278333 (-)
LOC103029242 LOC103029242,LOC108414971,LOC108256685 coding upstream 210482 10329090 ~ 10340189 (-)
LOC103044364 LOC108412379 coding upstream 766245 10884853 ~ 10952099 (-)
aspa aspa,LOC107665049,LOC107712162,LOC107595485,LOC107731059 coding upstream 1229047 11347655 ~ 11370382 (-)
G17780 NA non-coding downstream 5454 10093193 ~ 10097725 (-)
G17770 NA non-coding downstream 72198 10017813 ~ 10030981 (-)
G17757 NA non-coding downstream 149066 9952363 ~ 9954113 (-)
G17690 NA non-coding downstream 170044 9932915 ~ 9933135 (-)
G17681 NA non-coding downstream 255719 9847224 ~ 9847460 (-)
G17782 NA non-coding upstream 14681 10133289 ~ 10133738 (-)
G17791 NA non-coding upstream 141327 10259935 ~ 10260287 (-)
G17796 NA non-coding upstream 150883 10269491 ~ 10270624 (-)
G17799 NA non-coding upstream 174978 10293586 ~ 10298657 (-)
G17808 NA non-coding upstream 224188 10342796 ~ 10343263 (-)
mak mak other downstream 94028 9995145 ~ 10009151 (-)
G17638 NA other downstream 540454 9562427 ~ 9562725 (-)
LOC111188216 NA other downstream 1216862 8861134 ~ 8886317 (-)
LOC103026934 ahrr,LOC108431062 other downstream 2095559 7924929 ~ 8007620 (-)
sec61b sec61b,LOC102796100 other downstream 3558904 6534859 ~ 6544275 (-)
G17792 NA other upstream 128067 10246675 ~ 10247318 (-)
LOC103047439 zswim7,LOC107665024,LOC107712139,LOC107740465,LOC107688637,LOC107731017 other upstream 897421 11016029 ~ 11080184 (-)
LOC107197924 NA other upstream 957630 11076238 ~ 11083799 (-)
abr abr,si:ch211-253h3.1,LOC107665039,LOC107712163,LOC107688618,LOC107731041,LOC103375456,LOC106567975 other upstream 966872 11085480 ~ 11334518 (-)
LOC103044489 LOC103044489,LOC108428292 other upstream 1316828 11435436 ~ 11595523 (-)

Expression


Co-expression Network