LOC103028097 (tnip3)


Basic Information

Item Value
gene id LOC103028097
gene name tnip3
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 10267658 ~ 10278333 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007260076.3
ATGAATCCAGGTAAATGGAAACTTATTTGTGCTGGGGAATCCTCGGCCGGGCGTGGGCGGTAGAAACTCCCCTGTTGGGTAACATGTCTAAACCTGTTCCTCCTGGCTTATATAAAGCCAGACTGTGGCTGATTCAGACCACAAGACCTCTCTAGACCGGATCTCTGTACCTCCAGACCCCAAAAACCGCAACGGCTGCTTTCAGTAGAGCTGCTATCACAGCTGAGCGGAGACGAGCAGAGGAGAGCAGAGCATCATGGACAGGCTTCATTCAGACAGGTGTGACAGTGTGGAGCTTGATCCTAATCTAAGGTTTTGTCTCAGTCCTCCTGGCCAAAGCCCACCATACACACCTAATTTAGAGGTGCTTCAAAACCTGGAGAAGAAGAATCAAGAGCTTCTCGACATCAATAAGAAATGGGCTGAACGATACAGAACACTGAGACAGCATGTCAAAAGCTACGAGCTGAGgaaagaagagaaggagaaagacaCTAAACAGACTGGACAGGAAGCTGAGCTGAGGGCCCGCCTTCAGGatgcagacagagagatagcATGGCTGAGGATGCACTGTGACACTCTGACCAGAGGAGGGCAACAGCTAAATGAAGAAATCATGAGACTGAATACGgTCCTGCAGAAGAGCCTGGCAGTTCAACACAAGAGAAACCAGAGAGAGGAAAATGTTTGGAAACATCAGGCTCAGGTGTATAAGGAGGACTTCTTTAAAGAGAGGAAGGATAGAGAAATGCTAATGGCCAAATACACAGACTTGGAGGAAAAGTTCAAGAAAGTCCATGATGAGTTACGTGCTTACAAATTACAAGCTCGGTGGGCTCAGTTAGGCCCCTCGACAAGCCCCCCAGCACACACATAACCCATGTGATGCATCAGCGGAGTCCCATTCAGCTACAGCATAAAAAACGACTCAAAGCTGACCTTATTAAGAGCTTACCCTAAGCTGTGCTGCTCCCTTTATATATACCTTTATTTGTCTGACTGTGTGATGCTTATTGTTAGTGTATTAAGCGTGTTCTATTATTTAAATGGAATAATTTATCTGTAAATAAAGTTAGTTATATACAACA

Function

symbol description
tnip3 Enables polyubiquitin modification-dependent protein binding activity. Involved in cellular response to lipopolysaccharide; negative regulation of I-kappaB kinase/NF-kappaB signaling; and toll-like receptor signaling pathway. Predicted to be located in cytosol.

NR:

description
TNFAIP3-interacting protein 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007260076.3 True 1091 mRNA 0.46 9 10267658 10278333

Neighbor

gene id symbol gene type direction distance location
mppe1 mppe1 coding downstream 9785 10231513 ~ 10257873 (-)
elovl2 elovl2,LOC101268971 coding downstream 149050 10103179 ~ 10118608 (-)
gcm2 gcm2,LOC107552658,LOC107664656,LOC107707735,LOC107654664 coding downstream 189076 10071078 ~ 10078582 (-)
bloc1s5 bloc1s5 coding downstream 1153753 9109014 ~ 9113905 (-)
txndc5 txndc5,LOC107730007 coding downstream 1183372 9071382 ~ 9084286 (-)
LOC103029242 LOC103029242,LOC108414971,LOC108256685 coding upstream 50757 10329090 ~ 10340189 (-)
LOC103044364 LOC108412379 coding upstream 606520 10884853 ~ 10952099 (-)
aspa aspa,LOC107665049,LOC107712162,LOC107595485,LOC107731059 coding upstream 1069322 11347655 ~ 11370382 (-)
LOC103046022 NA coding upstream 1102669 11381002 ~ 11387605 (-)
LOC103045102 LOC103045102,LOC108427286,LOC106567973,LOC102213336,LOC101488131,LOC106603516 coding upstream 1123183 11401516 ~ 11566079 (-)
G17791 NA non-coding downstream 7371 10259935 ~ 10260287 (-)
G17782 NA non-coding downstream 133920 10133289 ~ 10133738 (-)
G17780 NA non-coding downstream 169933 10093193 ~ 10097725 (-)
G17770 NA non-coding downstream 236677 10017813 ~ 10030981 (-)
G17757 NA non-coding downstream 313545 9952363 ~ 9954113 (-)
G17799 NA non-coding upstream 15253 10293586 ~ 10298657 (-)
G17808 NA non-coding upstream 64463 10342796 ~ 10343263 (-)
G17845 NA non-coding upstream 262145 10540478 ~ 10543607 (-)
G17859 NA non-coding upstream 576293 10854626 ~ 10855071 (-)
G17921 NA non-coding upstream 771923 11050256 ~ 11060895 (-)
G17792 NA other downstream 20340 10246675 ~ 10247318 (-)
mak mak other downstream 258507 9995145 ~ 10009151 (-)
G17638 NA other downstream 704933 9562427 ~ 9562725 (-)
LOC111188216 NA other downstream 1381341 8861134 ~ 8886317 (-)
LOC103026934 ahrr,LOC108431062 other downstream 2260038 7924929 ~ 8007620 (-)
LOC103047439 zswim7,LOC107665024,LOC107712139,LOC107740465,LOC107688637,LOC107731017 other upstream 737696 11016029 ~ 11080184 (-)
LOC107197924 NA other upstream 797905 11076238 ~ 11083799 (-)
abr abr,si:ch211-253h3.1,LOC107665039,LOC107712163,LOC107688618,LOC107731041,LOC103375456,LOC106567975 other upstream 807147 11085480 ~ 11334518 (-)
LOC103044489 LOC103044489,LOC108428292 other upstream 1157103 11435436 ~ 11595523 (-)
G18037 NA other upstream 1406654 11684987 ~ 11685391 (-)

Expression


Co-expression Network