LOC103043161


Basic Information

Item Value
gene id LOC103043161
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 30174820 ~ 30179807 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007260126.3
GATGATGTCATGGAGGCAGAACTGATCTGTGACTGATAGAGATCGCCAACTTAAAAAGAAATTGGAACTTAAACAAGGAAATGAGCTCATGAGAGCCTCACTgactttatgaatattcattCAACCATTAATAGACACTAGGAGGAGCTAAATAGAGGAGAAGCTGAAGCAGTTTGGTCAGAAACTCAGAAAGTAGAGCATTGTAGTAATCATGAGTTCTTCACTCCactcttcttcttcatcatcagcTCACTCTGACAGTTTATCAACCTATTCTTCAGCTTCGTCTTTCTGTTCTGCATCCTCTGGTatcagcagctccagcagttcCAGTAGCTCCAGCACAAACTCCTCGAGTAACCTCCTCGTTTTCTGTAAGAACTGCAGAGAGCCTTTGTCAGCTGCGTGTCTGGCAGAAGGAAATCATCAGAAACACAAGTTCTTGAGTCTGCAGGATGCAGTGGTCAGTCAGACTGAGAAACTCTCCAGAGATTCCAAACACCtgaaaaacatatacaaaacCTGCAAGAACATAAAGCCGAAGACATCCAAAGCCAGGAAACAATGCAATGATACTTACGAGAAGGTTACAGAGACCATAGATGGCCTTTACCAAGATCTCTGGGCACTGCTGAGTCAGAACCAAATGCAGGCTTTGAACTTACTGGATGCCGAAagagaaacactgaataaaagtcTCAGTCAGTTTGAATATCAGGATACATTAACAGACATTCAGGAAACAATTCAGCAGCTGGAGAACCAACACACAATGGAACAACAGACTCAACTGGATGACATCAAGAAACTGCAGGAGCGtCTGGAAGACATGGAGAAGTTGTTTTCTGCTCTGACAGAAGAGACTGAATGTGAtgataatgcacagaaaatgtTTGATGGCACAAGGATCAGAGCTTTGGAGGAGTCCGTCAAAATTATCTTCCAGAAGATCACAGAGCTCCTGCCTCAGCCTTGGGAGATTTCAGATGCAATCACTTTTGACAAAGGGAAAAAGCACAATGCCCTGACGTTCTGTGAGAAGAGAATGCAGCTGTTCCTTCAAAACTCTACTTCCActcagacaaacagacacacagagacatggtGCAGCGCAGTGGCGGATAAGAGCTTCAATACAGGTCAGCACTActgggaggtggaggtggagggcAGTCAGAGCTGGTCGGTGGGGATAGTGTATGAGGACTGGCtgaagaataaagaaaatcagCTAAACCATCCTCTGGGCAGAGACTGTTCGTCCTGGGCCTTAGAGTGTGATGAAGGTGATCTGGTGGCTCTGCACAGTGATGAGGTCAGCGCAGTGAAGAGCTGCAGTGTGAGCAGGCTGGGGGTGTGTGTGGACTATGATAAAGGAAAACTGAAGTTCTATGATGTAAACTCAGCGAAGTGCCTGCATGTGACCGGATTTGACCCCTCAAAACCAGTTCACCCTGCCTTCAGCCTCCGAAAAACAGGCCTCAAAAAGACCTCTAGCCTCACCATCTGCAAACTCTTTCCCTCATCTGAGAACAGATATTTAGAGGACaatgaggaggaggaagacACCAGCAGAAACAATCTGAGAACTTCAGCTGATGACCAGGTTTCAGACCTGGCTGATTCTGTTCAGAGTCTTACACCAAACTAGGTGGACACTTTTCATCCACATTGTATCTactttatatttctatatatatctGGGTCATTCTTTTGTTATATTCACAAAAAACTATAATTGTTTTTTGTGCTACTGTTAACAGTAATAAAGTCAATTGTACATAACATCTATTTGCTGTACAATACATAatttcagtaataaaaaaacattttataattatgTCTGTTTCCTGGCCAACCCTTTATGGATTCTGTTAAAAACCCTAAATAAAGTCTACAATCATCTGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007260126.3 True 1908 mRNA 0.43 6 30174820 30179807

Neighbor

gene id symbol gene type direction distance location
LOC103039153 LOC108426583 coding upstream 12993 30145146 ~ 30161827 (+)
dcaf11 dcaf11,LOC107691410 coding upstream 31657 30131539 ~ 30143163 (+)
ngdn NA coding upstream 45495 30124804 ~ 30129325 (+)
prdm14 prdm14,LOC107683184,LOC104959664 coding upstream 82076 30084377 ~ 30092744 (+)
ncoa2 ncoa2 coding upstream 94635 29989665 ~ 30080185 (+)
LOC103041619 NA coding downstream 47738 30227545 ~ 30249748 (+)
LOC103028785 LOC103028785,LOC108412595,LOC105899448,LOC107695994,LOC107582101 coding downstream 103834 30283641 ~ 30295918 (+)
LOC103040669 LOC108411512,LOC102303064,LOC101467994 coding downstream 195768 30375575 ~ 30393774 (+)
ylpm1 ylpm1,LOC108411503,LOC107729078,LOC107685771 coding downstream 234308 30414115 ~ 30433290 (+)
LOC103026930 LOC103026930,LOC108411508,LOC105017614,LOC107714796,LOC107670243,LOC107565462,LOC107550532,LOC107676708 coding downstream 270295 30450102 ~ 30480340 (+)
G22456 NA non-coding upstream 169326 30000115 ~ 30005494 (+)
G22445 NA non-coding upstream 310755 29862505 ~ 29864065 (+)
G22430 NA non-coding upstream 585550 29589046 ~ 29589270 (+)
G22424 NA non-coding upstream 606450 29567663 ~ 29568370 (+)
LOC111195772 NA non-coding upstream 977162 29196469 ~ 29197658 (+)
G22556 NA non-coding downstream 84563 30264370 ~ 30264646 (+)
G22558 NA non-coding downstream 85218 30265025 ~ 30265290 (+)
G22576 NA non-coding downstream 124488 30304295 ~ 30304616 (+)
G22614 NA non-coding downstream 260698 30440505 ~ 30446957 (+)
LOC111195805 NA non-coding downstream 336388 30516195 ~ 30519886 (+)
LOC103034207 ube2w,LOC107585923,LOC103354920 other upstream 992689 29171008 ~ 29182131 (+)
pabpn1 pabpn1,LOC107596039 other upstream 1006907 29152052 ~ 29167913 (+)
G22276 NA other upstream 1185989 28988568 ~ 28988831 (+)
LOC111192074 LOC108249465 other upstream 1526632 28645061 ~ 28648188 (+)
mtrr mtrr other upstream 2600418 27520234 ~ 27574402 (+)
LOC111195794 LOC107569315,LOC107712034,LOC107751710 other downstream 79501 30259308 ~ 30263850 (+)
LOC103026436 LOC108411506,LOC103368653 other downstream 269557 30449364 ~ 30512826 (+)
G22834 NA other downstream 1314538 31494345 ~ 31494898 (+)
G23086 cpsf2,LOC107704064,LOC107548411,LOC107559080,LOC107669458 other downstream 2642537 32822344 ~ 32826939 (+)
LOC103042732 NA other downstream 2657245 32837052 ~ 32841346 (+)

Expression


Co-expression Network