LOC103044795 (ehd2a,LOC108427007,LOC108260244,LOC107595479,LOC107685737,LOC107712157,LOC107740518,LOC107587717)


Basic Information

Item Value
gene id LOC103044795
gene name ehd2a,LOC108427007,LOC108260244,LOC107595479,LOC107685737,LOC107712157,LOC107740518,LOC107587717
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 11596368 ~ 11606026 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007260367.3
ACACCAGGACCCTCTGAAGTCTCTCAAGGCAAATTAGGCTGCAGTCGGGCTGGACTGCAAGGCAGGTGGCTGTGTCTTCTCTGCATGCTTTTCtacatttagaaaaatatgaaaagaagAAAGTCTTATCCAATCTAGAGGAAATTAATTTATAGTTGTGCCATTTTGTTCCACCAAGTATTGGATTGAAACAAGCTGATTGTGGTGAACCTGGAAACCCCACAAAAAATCCAGTCTCAGACTCAAGAATTTACACAGCTGTCCTAAGGAGTGTTTTGCTAAATGACATCCAAGGAAATGAAGAACAGGGGTGTAAAATCCCTGAAGAAGGTGCAGACAGTGACTGAGGGGTTAAAACTGCTCTACAGACAGAAGCTTCTTCCTCTGGAGAAATATTACAGCTTCTCTGACTTTCACTCCCCAAGCCTGGAGGATGCAGACTTTGACAACAAACCCATGATCCTGGTGGTGGGTCAGTACTCAACAGGAAAGACAACCTTCATTagGTATCTCCTTGAGCAAGAATACCCAAGCGGCAGAATTGGCCCAGAACCCACAACTGACTCTTTCACTGCTATTATGCATGGAGATGTTCCAGGGATAATTCCAGGCAATGCACTTGTTGTAGACCCCAACAAACCCTTCCGCAAACTCAACCCTTTTGGAAACGCTTTCCTCAACCGGTTCCAGTGTGTGCACTTTTCAAACCAGGTCCTGGAGAGCATCAGCATCATTGACACACCTGGAATTTTATCCAGCTCTGAGAAAAGGATGAGCAGAGGATATGACTTCCCTGCGGTCCTCCGCTGGTTTGCAGAACATGTGGACCGCATCATCCTCCTGTGTGACGCCCATAAACTGGAGCTGTCTGATGAATTCTCACGCACCATCACAGCCTTGAGAGGCAATGAGGACAAGCTGAGGGTGGTGCTCAACAAAGCAGACATGGTGGACTCCCAGCAGCTGATGCGAGTGTATGGAGCCCTCATGTGGTCGCTGGGCAAAGTGTTCTGTACCCCAGAAGTCCTGAGGGTCTATATCGGGTCTTTTTGGTCTGCTCCACTGAGGAAGACAGATAACCGCAGGCTGTTTGAACAGGAGGAAGATGATCTTTTTGCTGATATTCAAAACCTGCCTCGCAACTCCGCCCTCAGAAAGCTCAGTGACCTGGTAAAGAGGGCACGGCTAGTGAGGGCCCATGCCTATATTGTCAGCTGTCTGAAGGAGGAGATGCCTCTCGTCTTTCGCCGACACAACAAAAAGAGGGATCTAATATACGACCTCCCAGTCATATTCTCCAGGATCGAGCAGCGGCATCAGATCTCACCTGGAGATTTTCCTGACTGTGCAAAAATGCAGGAGCAACTCATGAATCATGACTTCACCAAGTTTAAAGCCATTAAACCCAAACTCATGGCTAGTCTGGATGAGCTCCTGACCAATGACATCGCCAAGCTGATGCCTCTTCTTCGGCAGGAAGAATTGGAAGCTGCTGACCAACCTGGAGTGCAAGGTGGGGCCTTTCTGGGTATGGACAGAGGTCCATTTTTTGAAGGAAACCCCTTCCAGTACTCAGGGCCTAGTGGAGAATGTGAGATGATCTATGGTGAAGGATGGGTGGTCTCTAAAGATAAGCCCAAGTATGATGAGATCTTCTACAACCTCTCCCCTCATGAGGGAAAGCTCAGTGGAACCAAAGTGAAGGATTGGATGGACAGAACCCAACTGCCCAGATCAGTCCTGGGCAGAATTTGGAAACTGTCGGACGTGGACTGTGACGGCATGCTGGACGAGGAGGAGTTTGCTTTGGCCAGCCATCTGATCGAAGTTAAGCTGGAGGGCTTTGGGCTTCCCCCAAAGCTTCCTGCACATCTGGTGCCTCCATCTAAAAGAAGGCGCAAAGCCTCAAACTCAGAGAACAGGGAGGACTGTGGGGACATATAGAGACTTGGATCTTTAACAATCAAAATGAAGTAATGGTGACTGAGTAGATTGATGTGTATCGTTATTAATCTAAGGATACATTTCAAGTCAACTGTCAGCAATATTTAGGATAAAAGTGCTTGAAGATGTTTACACACTCCCCTACATCCTAACACTACAGTGCTACCATAATATATACCCAATATTAAATGAAAAGTCAACACAGTGTAAATTCTATACATTATgtttaacatttataacatgttTGACGTGCTAAATAATATAACCCATACAAAACAGTATCTAAAGTTTCCCTACACGATGTAATTTGGTTTATTATACAACATTAAAAAGGTCAAGGCCAAAGAATGCATGTGTTGCTGTAACATGCAGAGAGTCTCCTAGCCACAACACAGAGGCCACAGATAGTTTTGATTTCAAGATGGTGCACTGCATAACTTATTATGAGACGTTATTatgtaagaaaaatattttgtgtgtgttcatCTTTATTACCCAAATACAAACTTATGTAGGCTATTACTTAACGAAATGCCAAGTGGCACGACTTGACAAGCTGTACAATTACATGCATTTT

Function

symbol description
ehd2a Predicted to enable ATP binding activity; GTP binding activity; and calcium ion binding activity. Predicted to be involved in several processes, including cilium assembly; endocytic recycling; and protein localization to plasma membrane. Predicted to act upstream of or within actin cytoskeleton organization. Predicted to be located in endosome and membrane. Predicted to be active in cytoplasmic vesicle; perinuclear region of cytoplasm; and plasma membrane. Orthologous to human EHD2 (EH domain containing 2).

NR:

description
PREDICTED: EH domain-containing protein 2-like

GO:

id name namespace
GO:0003924 GTPase activity molecular_function
GO:0005509 calcium ion binding molecular_function
GO:0005525 GTP binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007260367.3 True 2521 mRNA 0.45 7 11596368 11606026

Neighbor

gene id symbol gene type direction distance location
akap10 akap10 coding downstream 8041 11567964 ~ 11588327 (-)
LOC103045102 LOC103045102,LOC108427286,LOC106567973,LOC102213336,LOC101488131,LOC106603516 coding downstream 30289 11401516 ~ 11566079 (-)
LOC103046022 NA coding downstream 208763 11381002 ~ 11387605 (-)
aspa aspa,LOC107665049,LOC107712162,LOC107595485,LOC107731059 coding downstream 225986 11347655 ~ 11370382 (-)
LOC103044364 LOC108412379 coding downstream 644269 10884853 ~ 10952099 (-)
LOC103043164 LOC103043164,LOC108428299,LOC108259900 coding upstream 14183 11620209 ~ 11625691 (-)
LOC103042846 NA coding upstream 24762 11630788 ~ 11636218 (-)
sympk sympk,LOC107681888 coding upstream 32705 11638731 ~ 11650550 (-)
LOC103040613 hnrnpul1l,hnrnpul1,LOC108413504,LOC108259896 coding upstream 46915 11652941 ~ 11664241 (-)
rasl10b rasl10b,LOC107685904,LOC107595522,LOC107681887,LOC107710719,LOC107587740 coding upstream 82920 11688946 ~ 11715524 (-)
G17929 NA non-coding downstream 448960 11146405 ~ 11147408 (-)
G17921 NA non-coding downstream 535473 11050256 ~ 11060895 (-)
G17859 NA non-coding downstream 741297 10854626 ~ 10855071 (-)
G17845 NA non-coding downstream 1052761 10540478 ~ 10543607 (-)
G17808 NA non-coding downstream 1253105 10342796 ~ 10343263 (-)
G18085 pex12,LOC107681885,LOC107710733,LOC107587685 non-coding upstream 174006 11780032 ~ 11781320 (-)
G18087 NA non-coding upstream 180206 11786232 ~ 11786601 (-)
G18114 NA non-coding upstream 273726 11879752 ~ 11880042 (-)
LOC103023588 NA non-coding upstream 357998 11964024 ~ 11970718 (-)
G18154 NA non-coding upstream 529394 12135420 ~ 12135738 (-)
LOC103044489 LOC103044489,LOC108428292 other downstream 845 11435436 ~ 11595523 (-)
abr abr,si:ch211-253h3.1,LOC107665039,LOC107712163,LOC107688618,LOC107731041,LOC103375456,LOC106567975 other downstream 261850 11085480 ~ 11334518 (-)
LOC107197924 NA other downstream 512569 11076238 ~ 11083799 (-)
LOC103047439 zswim7,LOC107665024,LOC107712139,LOC107740465,LOC107688637,LOC107731017 other downstream 516184 11016029 ~ 11080184 (-)
G17792 NA other downstream 1349050 10246675 ~ 10247318 (-)
G18037 NA other upstream 78961 11684987 ~ 11685391 (-)
orai2 LOC103026696,LOC108428392,LOC107685638,LOC107595471 other upstream 175486 11781512 ~ 11796151 (-)
LOC111191510 LOC108414110,LOC108437066,LOC108442041,LOC108437065 other upstream 1161073 12767099 ~ 12780581 (-)
fxyd2 NA other upstream 1205150 12811176 ~ 12816601 (-)
G18371 tagln,tagl,LOC108437045,LOC103026775,LOC108437046,LOC107749469,LOC107700246,LOC107548469,LOC107746372,LOC107710578 other upstream 1329275 12935301 ~ 13007435 (-)

Expression


Co-expression Network