c3h11orf54 (cunh11orf54,c28h11orf54,zgc:85789,LOC107709398,LOC107587676,LOC107690214,LOC107685814)


Basic Information

Item Value
gene id c3h11orf54
gene name cunh11orf54,c28h11orf54,zgc:85789,LOC107709398,LOC107587676,LOC107690214,LOC107685814
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 11388924 ~ 11394347 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007260369.3
GACCTGCGTGTGTttaggcgtgtgtgtgtgtgcgtgtgcgctGTGCAGTGCAGGATAGCGGTGCAGACTGAAGGATGGCAGgcagcagtaaaactgagaAGTACCAGATTCATGTTCCCAGTCTGGAGGAGTTAAGTGAGGTACTGGAAAAAGGACTCAGAAACAACTTTGAAGACGCGAAGGTCTGTGTGGCTGAGTGCCCAGATCTCTCACAAGCACCATTCCAGTTTCCTGTTAAAGGACTTTGTGGTAAACCTCGCATTACTGATGTGGGAGGTGTCCCCTACTTGATCCCCCTGGTCCACAAAGACAAGGTGTATAATATGAACACTGTGTCCAAGGAGTTGGAGCTTCCTGGGGCGTTTATACTCGGTGCTGGTGCTGTTTCATTTAAGACTGTCGGAATGAATGGAGAGTTGATGCCACTGGTGCTGACTGAGTCTGAAGACAAGCCTGCTGTCAATGGCAGCTACTTCTCCTCCATCAATCCAGTGGATGGGAAGTGTCTGCAGGAGAAATACAGTGAGAGATTCAGTGACTGTGATTTTGGGCTGCTTGCAAACCTCTTTGCGTGTGAGGGAAAACCTGGAAAGGTCATTGAGATCAGAGCGAGCAGACGGAAAGGGGAGGAGAGTCTTGTGAGCTGTATGAGGAAAACGATGGAAGAACATTATGGTGATAAGACTGTGGCTCTTGGTGGGACCTTCATCATCCAGAAAGGGAAGGCCAAGATCCACATTatgCCACAAGAGTTCTCTTCATGCCCCCTGAATACTAATGAAGACGTCAACaactggctgaagcactttgaAGTCAGTGCTCCCCTCATCTGCCAGTCTGTCATGGTGTCCAGAGATCCAGGTTTGGATCTGAGGCTGGAACACACTCATGGCTTCAGCCATCACGGTGAGGGAGGCCACTACTACATAGACACCACCCCAAACACAGTGGAATACCTGGGATACTTCCTCCCAGCTGATTTCATTTATCGCATTGACCGGCCAACGGACACCCACAATGTGGGCAGAGACTGAATATAATGAGGATTTAGTCTTGCAGTGAATCACaatgactgtttattaatgAATCAAATGAATCAAAGAGCAAGAGCTCTTTATGTTTTCAACTTACTGTAAAGAAAATTTAGTTAATAAAGATGGTTTGTTGGGTTGC

Function

symbol description
zgc:85789 Predicted to enable hydrolase activity, acting on ester bonds and zinc ion binding activity. Predicted to be active in nucleus. Is expressed in pronephric duct and yolk syncytial layer. Orthologous to human C11orf54 (chromosome 11 open reading frame 54).

NR:

description
PREDICTED: ester hydrolase C11orf54 homolog

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0005634 nucleus cellular_component
GO:0046872 metal ion binding molecular_function
GO:0016787 hydrolase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007260369.3 True 1173 mRNA 0.47 8 11388924 11394347

Neighbor

gene id symbol gene type direction distance location
LOC103044085 LOC105902693,LOC107570661 coding upstream 583226 10517421 ~ 10805698 (+)
LOC103028717 impa1,LOC103028717,LOC107085441,LOC100708678,LOC102192612,LOC102777947,LOC101479609,LOC103356684,LOC108415234 coding upstream 1038876 10340494 ~ 10350048 (+)
LOC103027767 gnal,LOC108426578,LOC106590334,LOC106579638 coding upstream 1161592 10144084 ~ 10227332 (+)
sycp2l NA coding upstream 1287517 10080591 ~ 10101407 (+)
tmem14c tmem14c,tm14c,tmem14ca,LOC107671380 coding upstream 1393884 9991406 ~ 9995040 (+)
spata22 NA coding downstream 2540 11396887 ~ 11401496 (+)
LOC111194924 NA coding downstream 213843 11608190 ~ 11619687 (+)
LOC103043684 snaa,napaa,LOC103043684,LOC108428316,LOC107740516,LOC107587681,LOC107681892 coding downstream 231431 11625778 ~ 11630783 (+)
LOC103041104 NA coding downstream 270807 11665154 ~ 11669150 (+)
gas2l2 NA coding downstream 276090 11670437 ~ 11682713 (+)
G17937 NA non-coding upstream 35726 11352593 ~ 11353198 (+)
G17913 NA non-coding upstream 78845 11272708 ~ 11310079 (+)
G17907 abr non-coding upstream 145730 11205249 ~ 11243194 (+)
G17891 NA non-coding upstream 304755 11083918 ~ 11084169 (+)
G17880 NA non-coding upstream 328084 11051628 ~ 11060840 (+)
G17965 NA non-coding downstream 173417 11567764 ~ 11569542 (+)
G17973 LOC103044489,LOC108428292 non-coding downstream 195957 11590304 ~ 11595495 (+)
G17979 hnrnpul1l,hnrnpul1,LOC108413504,LOC108259896,LOC105010850 non-coding downstream 261720 11656067 ~ 11659062 (+)
G18000 hnrnpul1,LOC108413504,LOC107712123,LOC107685667,LOC107595510,LOC108259896 non-coding downstream 264835 11659182 ~ 11661549 (+)
G17986 NA non-coding downstream 275118 11669465 ~ 11670341 (+)
G17904 abr other upstream 198844 11177908 ~ 11190080 (+)
G17745 NA other upstream 1106948 10281224 ~ 10281976 (+)
G17443 NA other upstream 2438765 8916586 ~ 8950159 (+)
LOC111191978 NA other upstream 2484920 8899940 ~ 8904004 (+)
LOC111191971 NA other upstream 2489279 8891244 ~ 8899645 (+)
G18332 LOC107710578 other downstream 1573216 12967563 ~ 12975106 (+)
G18386 gjd1a,LOC103027887,LOC108437049,LOC107700241,LOC107548473,LOC107746368 other downstream 1650484 13044831 ~ 13074453 (+)
LOC103028202 h3f3b,LOC105891059,LOC107572204,LOC105909691,LOC101073377,LOC105888650,LOC107388308 other downstream 1702363 13096710 ~ 13128508 (+)
G18413 LOC103047348,LOC108437052,LOC108260116 other downstream 1820301 13214648 ~ 13224093 (+)
G18416 LOC103046837,LOC108437054,LOC108260117,LOC107548478,LOC107700237,LOC107746364 other downstream 1838848 13233195 ~ 13237037 (+)

Expression


Co-expression Network