spata22


Basic Information

Item Value
gene id spata22
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 11396887 ~ 11401496 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007260370.3
CGCAGTATGAGGAGAGACCGCGGTGTCTCGCGCCGCTTGGTTGTCAGGGCTGGTGAATATCGGAgcgctgtgtgtgagagagactcgCTCACTTTATAAACCCTCAGTCCGGGTTTTATACACAGTCTTTAACTCCACAGCTGAAGGGGGAAGTTTCATTAAATAGTCAGCTAGACTGACCCGCTACCCGTTAGATAAGCGGAAAGTCATGACCGGACAGTACAGCACCGGGTAGGCTCGGTTAGAGAGTAATGAAGTCAGTTAGCGTGGGGAGCTAACCTAGTTAACGAACTTTCCCTGTGTGTCCTTTAAAATACGTAGCTGGATAGTTTAGCTAAGTGCAGTTTACTGTGACAGCACTAGAAACACTTCACACGTAAGATAAGTTATTCATTTATAGGTAATTTTGTCTTTTAGTTGTCTTTTAGTAGATTTAACAGAAGATAACAGAAGGGTtagctaaccgctaagctaacAACTTACCTAACGAACCCAGCAGCTCTTATCATGAGGAGAAACGAAAACCAGCCGAGACCGACAGCAGGCTGCCTGTCAGTTCCACTGTTTAACCAGAAGAAACGTAGCAGATTGCCTTTGACGTCCAATCCGTCTGAGAATGAAATGTACTCTGGCAACAGCCTAGGGTATGCCCCGGCATTGGCAACAACAAATCGAGCGCCTCTAACCCAGAGAAGTGAATGGAATCAGCAGACAAATCTACGACCTGAGCAAGGCAAAACTTGGCCTTCTACTTCATCTCGCTCAACAGGACAAGGATATTCACCTATACCTCACCCTCATAAACCCATCTATAATAGatcaGGTACAGGGATGCAGAGACCATCAGGTAAATATGATTCCATGGCAATGACTCAGAACTGCAGGGTGGATGCATTTCCTAGTGTCAGTGGAGCCTATCAGGCCCAGGAAAGACCATTTGTTGGCAAGCAACCCATAAAGCAGCAGACCTTTAGCAGACAGGCCAATCCACCCAAAGCGTCTTTCACCCATCAGAAGCCCATGCCCGGTCCATCACACAGCCAGGGAGCTGGTCCTCAGAGTCAGAACACTAAGTGGAAGGTTAAATCTGTTGGGCATACGAGTGCTGGGATGTGGGTTGAGGATACTTTTGGCACTTCAAGAAATGAAAGCAGTGCACAGCAAGAGAAATCGACAGAGACAAAGCCAGGACCTGAGAATTCCCTGCGAATTCTCACAGCTGTTATTGAGGGTATGAAACACTGGAGCCAGTTTAAGGACAAAGTGCCTATGCTGTTTGAGATTTTTGCCACTCTTGACTCTGCTGTTACAGTAGGAAAATATGGTGCCAAGAACTTCCTCATGAGGGATGGAAAAGATGTGGTGTCATGTGTCTACTATGAAACTGACCAAGTGCTGCCTAGGCTGATCCGAGGTCAGGTGCATCGCTGTGTCGGGAACTACgacagacaaaaaaacattctCACCTGTGTGTCGGTGCGGCCCGCCTCTTCCTCCGAGCAGAGAAATGCTCAGGAGGCTGTGAAAGCTTCAGATGCTGAGATGAGAAGCGTGGTCCAGGTGCTTTCAGAAATGTAATATGAAGTGGAACTTGACGTGACAGAACATAGCAGGAGGATTTCAGGACATTCAAGTTaagtttgttttctcttttagtTGAAGATTAGTTCAGAGGTGAAGTGTGATTATATTGGATTATATACAACATTCCTCTTCGTCCACAGACAATTTGACATGTTGCAGTTTTATCATTTATATGCATTGGTTACATACATTTGTGTATTCATTCATCAGTTCAAAACTATTACTGCATATGCTATATTTACAATGATGCAAAATTACCTAAAACCATTAAAACCTGCTTAATCTAAA
>XM_022680353.1
CGCAGTATGAGGAGAGACCGCGGTGTCTCGCGCCGCTTGGTTGTCAGGGCTGGTGAATATCGGAgcgctgtgtgtgagagagactcgCTCACTTTATAAACCCTCAGTCCGGGTTTTATACACAGTCTTTAACTCCACAGCTGAAGGGGGAAGTTTCATTAAATAGTCAGCTAGACTGACCCGCTACCCGTTAGATAAGCGGAAAGTCATGACCGGACAGTACAGCACCGGTAGATTTAACAGAAGATAACAGAAGGGTtagctaaccgctaagctaacAACTTACCTAACGAACCCAGCAGCTCTTATCATGAGGAGAAACGAAAACCAGCCGAGACCGACAGCAGGCTGCCTGTCAGTTCCACTGTTTAACCAGAAGAAACGTAGCAGATTGCCTTTGACGTCCAATCCGTCTGAGAATGAAATGTACTCTGGCAACAGCCTAGGGTATGCCCCGGCATTGGCAACAACAAATCGAGCGCCTCTAACCCAGAGAAGTGAATGGAATCAGCAGACAAATCTACGACCTGAGCAAGGCAAAACTTGGCCTTCTACTTCATCTCGCTCAACAGGACAAGGATATTCACCTATACCTCACCCTCATAAACCCATCTATAATAGatcaGGTACAGGGATGCAGAGACCATCAGGTAAATATGATTCCATGGCAATGACTCAGAACTGCAGGGTGGATGCATTTCCTAGTGTCAGTGGAGCCTATCAGGCCCAGGAAAGACCATTTGTTGGCAAGCAACCCATAAAGCAGCAGACCTTTAGCAGACAGGCCAATCCACCCAAAGCGTCTTTCACCCATCAGAAGCCCATGCCCGGTCCATCACACAGCCAGGGAGCTGGTCCTCAGAGTCAGAACACTAAGTGGAAGGTTAAATCTGTTGGGCATACGAGTGCTGGGATGTGGGTTGAGGATACTTTTGGCACTTCAAGAAATGAAAGCAGTGCACAGCAAGAGAAATCGACAGAGACAAAGCCAGGACCTGAGAATTCCCTGCGAATTCTCACAGCTGTTATTGAGGGTATGAAACACTGGAGCCAGTTTAAGGACAAAGTGCCTATGCTGTTTGAGATTTTTGCCACTCTTGACTCTGCTGTTACAGTAGGAAAATATGGTGCCAAGAACTTCCTCATGAGGGATGGAAAAGATGTGGTGTCATGTGTCTACTATGAAACTGACCAAGTGCTGCCTAGGCTGATCCGAGGTCAGGTGCATCGCTGTGTCGGGAACTACgacagacaaaaaaacattctCACCTGTGTGTCGGTGCGGCCCGCCTCTTCCTCCGAGCAGAGAAATGCTCAGGAGGCTGTGAAAGCTTCAGATGCTGAGATGAGAAGCGTGGTCCAGGTGCTTTCAGAAATGTAA
>XM_022680359.1
CGCAGTATGAGGAGAGACCGCGGTGTCTCGCGCCGCTTGGTTGTCAGGGCTGGTGAATATCGGAgcgctgtgtgtgagagagactcgCTCACTTTATAAACCCTCAGTCCGGGTTTTATACACAGTCTTTAACTCCACAGCTGAAGGGGGAAGTTTCATTAAATAGTCAGCTAGACTGACCCGCTACCCGTTAGATAAGCGGAAAGTCATGACCGGACAGTACAGCACCGGTTGTCTTTTAGTAGATTTAACAGAAGATAACAGAAGGGTtagctaaccgctaagctaacAACTTACCTAACGAACCCAGCAGCTCTTATCATGAGGAGAAACGAAAACCAGCCGAGACCGACAGCAGGCTGCCTGTCAGTTCCACTGTTTAACCAGAAGAAACGTAGCAGATTGCCTTTGACGTCCAATCCGTCTGAGAATGAAATGTACTCTGGCAACAGCCTAGGGTATGCCCCGGCATTGGCAACAACAAATCGAGCGCCTCTAACCCAGAGAAGTGAATGGAATCAGCAGACAAATCTACGACCTGAGCAAGGCAAAACTTGGCCTTCTACTTCATCTCGCTCAACAGGACAAGGATATTCACCTATACCTCACCCTCATAAACCCATCTATAATAGatcaGGTACAGGGATGCAGAGACCATCAGGTAAATATGATTCCATGGCAATGACTCAGAACTGCAGGGTGGATGCATTTCCTAGTGTCAGTGGAGCCTATCAGGCCCAGGAAAGACCATTTGTTGGCAAGCAACCCATAAAGCAGCAGACCTTTAGCAGACAGGCCAATCCACCCAAAGCGTCTTTCACCCATCAGAAGCCCATGCCCGGTCCATCACACAGCCAGGGAGCTGGTCCTCAGAGTCAGAACACTAAGTGGAAGGTTAAATCTGTTGGGCATACGAGTGCTGGGATGTGGGTTGAGGATACTTTTGGCACTTCAAGAAATGAAAGCAGTGCACAGCAAGAGAAATCGACAGAGACAAAGCCAGGACCTGAGAATTCCCTGCGAATTCTCACAGCTGTTATTGAGGGTATGAAACACTGGAGCCAGTTTAAGGACAAAGTGCCTATGCTGTTTGAGATTTTTGCCACTCTTGACTCTGCTGTTACAGTAGGAAAATATGGTGCCAAGAACTTCCTCATGAGGGATGGAAAAGATGTGGTGTCATGTGTCTACTATGAAACTGACCAAGTGCTGCCTAGGCTGATCCGAGGTCAGGTGCATCGCTGTGTCGGGAACTACgacagacaaaaaaacattctCACCTGTGTGTCGGTGCGGCCCGCCTCTTCCTCCGAGCAGAGAAATGCTCAGGAGGCTGTGAAAGCTTCAGATGCTGAGATGAGAAGCGTGGTCCAGGTGCTTTCAGAAATGTAA
>XM_022680366.1
CGCAGTATGAGGAGAGACCGCGGTGTCTCGCGCCGCTTGGTTGTCAGGGCTGGTGAATATCGGAgcgctgtgtgtgagagagactcgCTCACTTTATAAACCCTCAGTCCGGGTTTTATACACAGTCTTTAACTCCACAGCTGAAGGGGGAAGTTTCATTAAATAGTCAGCTAGACTGACCCGCTACCCGTTAGATAAGCGGAAAGTCATGACCGGACAGTACAGCACCGGATTTAACAGAAGATAACAGAAGGGTtagctaaccgctaagctaacAACTTACCTAACGAACCCAGCAGCTCTTATCATGAGGAGAAACGAAAACCAGCCGAGACCGACAGCAGGCTGCCTGTCAGTTCCACTGTTTAACCAGAAGAAACGTAGCAGATTGCCTTTGACGTCCAATCCGTCTGAGAATGAAATGTACTCTGGCAACAGCCTAGGGTATGCCCCGGCATTGGCAACAACAAATCGAGCGCCTCTAACCCAGAGAAGTGAATGGAATCAGCAGACAAATCTACGACCTGAGCAAGGCAAAACTTGGCCTTCTACTTCATCTCGCTCAACAGGACAAGGATATTCACCTATACCTCACCCTCATAAACCCATCTATAATAGatcaGGTACAGGGATGCAGAGACCATCAGGTAAATATGATTCCATGGCAATGACTCAGAACTGCAGGGTGGATGCATTTCCTAGTGTCAGTGGAGCCTATCAGGCCCAGGAAAGACCATTTGTTGGCAAGCAACCCATAAAGCAGCAGACCTTTAGCAGACAGGCCAATCCACCCAAAGCGTCTTTCACCCATCAGAAGCCCATGCCCGGTCCATCACACAGCCAGGGAGCTGGTCCTCAGAGTCAGAACACTAAGTGGAAGGTTAAATCTGTTGGGCATACGAGTGCTGGGATGTGGGTTGAGGATACTTTTGGCACTTCAAGAAATGAAAGCAGTGCACAGCAAGAGAAATCGACAGAGACAAAGCCAGGACCTGAGAATTCCCTGCGAATTCTCACAGCTGTTATTGAGGGTATGAAACACTGGAGCCAGTTTAAGGACAAAGTGCCTATGCTGTTTGAGATTTTTGCCACTCTTGACTCTGCTGTTACAGTAGGAAAATATGGTGCCAAGAACTTCCTCATGAGGGATGGAAAAGATGTGGTGTCATGTGTCTACTATGAAACTGACCAAGTGCTGCCTAGGCTGATCCGAGGTCAGGTGCATCGCTGTGTCGGGAACTACgacagacaaaaaaacattctCACCTGTGTGTCGGTGCGGCCCGCCTCTTCCTCCGAGCAGAGAAATGCTCAGGAGGCTGTGAAAGCTTCAGATGCTGAGATGAGAAGCGTGGTCCAGGTGCTTTCAGAAATGTAA

Function

GO: NA

KEGG:

id description
K22421 SPATA22; spermatogenesis-associated protein 22

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007260370.3 True 1872 mRNA 0.45 7 11396887 11401496
XM_022680353.1 False 1381 mRNA 0.49 8 11396887 11401202
XM_022680359.1 False 1392 mRNA 0.49 8 11396887 11401202
XM_022680366.1 False 1378 mRNA 0.49 8 11396887 11401202

Neighbor

gene id symbol gene type direction distance location
c3h11orf54 cunh11orf54,c28h11orf54,zgc:85789,LOC107709398,LOC107587676,LOC107690214,LOC107685814 coding upstream 2540 11388924 ~ 11394347 (+)
LOC103044085 LOC105902693,LOC107570661 coding upstream 591189 10517421 ~ 10805698 (+)
LOC103028717 impa1,LOC103028717,LOC107085441,LOC100708678,LOC102192612,LOC102777947,LOC101479609,LOC103356684,LOC108415234 coding upstream 1046839 10340494 ~ 10350048 (+)
LOC103027767 gnal,LOC108426578,LOC106590334,LOC106579638 coding upstream 1169555 10144084 ~ 10227332 (+)
sycp2l NA coding upstream 1295480 10080591 ~ 10101407 (+)
LOC111194924 NA coding downstream 206694 11608190 ~ 11619687 (+)
LOC103043684 snaa,napaa,LOC103043684,LOC108428316,LOC107740516,LOC107587681,LOC107681892 coding downstream 224282 11625778 ~ 11630783 (+)
LOC103041104 NA coding downstream 263658 11665154 ~ 11669150 (+)
gas2l2 NA coding downstream 268941 11670437 ~ 11682713 (+)
pex12 pex12,LOC107681885,LOC107710733,LOC107685880,LOC107587685 coding downstream 375907 11777403 ~ 11781351 (+)
G17937 NA non-coding upstream 43689 11352593 ~ 11353198 (+)
G17913 NA non-coding upstream 86808 11272708 ~ 11310079 (+)
G17907 abr non-coding upstream 153693 11205249 ~ 11243194 (+)
G17891 NA non-coding upstream 312718 11083918 ~ 11084169 (+)
G17880 NA non-coding upstream 336047 11051628 ~ 11060840 (+)
G17965 NA non-coding downstream 166268 11567764 ~ 11569542 (+)
G17973 LOC103044489,LOC108428292 non-coding downstream 188808 11590304 ~ 11595495 (+)
G17979 hnrnpul1l,hnrnpul1,LOC108413504,LOC108259896,LOC105010850 non-coding downstream 254571 11656067 ~ 11659062 (+)
G18000 hnrnpul1,LOC108413504,LOC107712123,LOC107685667,LOC107595510,LOC108259896 non-coding downstream 257686 11659182 ~ 11661549 (+)
G17986 NA non-coding downstream 267969 11669465 ~ 11670341 (+)
G17904 abr other upstream 206807 11177908 ~ 11190080 (+)
G17745 NA other upstream 1114911 10281224 ~ 10281976 (+)
G17443 NA other upstream 2446728 8916586 ~ 8950159 (+)
LOC111191978 NA other upstream 2492883 8899940 ~ 8904004 (+)
LOC111191971 NA other upstream 2497242 8891244 ~ 8899645 (+)
G18332 LOC107710578 other downstream 1566067 12967563 ~ 12975106 (+)
G18386 gjd1a,LOC103027887,LOC108437049,LOC107700241,LOC107548473,LOC107746368 other downstream 1643335 13044831 ~ 13074453 (+)
LOC103028202 h3f3b,LOC105891059,LOC107572204,LOC105909691,LOC101073377,LOC105888650,LOC107388308 other downstream 1695214 13096710 ~ 13128508 (+)
G18413 LOC103047348,LOC108437052,LOC108260116 other downstream 1813152 13214648 ~ 13224093 (+)
G18416 LOC103046837,LOC108437054,LOC108260117,LOC107548478,LOC107700237,LOC107746364 other downstream 1831699 13233195 ~ 13237037 (+)

Expression


Co-expression Network