LOC103046022


Basic Information

Item Value
gene id LOC103046022
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 11381002 ~ 11387605 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007260371.3
AGGACCCCGCCCACCGAGCCTGTGCGAGTTGCGCGTTGTACGGAGGAGTATCACACGTGGGAGCTGAAGCAGCTGAACGCGGATAAACAGAGTGAATAATGCGgatctgagctctgagtttctgCGTGTTTTAATCAGACTGAGCGCTGATGATCTGCTGAAGCTCTCTGTAGGAGCTGGTGGGGGGTCAGGAGTGTGGAGAGCATGGAGAATATTTTAGAGGCGATCACTCAGAGTGAGCTCGTTCAGCTGGACTCTGGGAGAGATGTGGTGTTTGAAACTCCTTCCACAGACGTTCTCAACACTATTTCACAGTATTTTGAGGACCCAGTGAGCAGATTCGAGGACTCGAGTGCTGCTAAACCATATTCACCTGTCTCAGACAGTGACTCTGGTGACAGTCTGTTTTTGACTCAGGCCGTGAGTCCGGTACTCAGGGCAGTTAAACGACACCGCTCCTCTGAAAGATCTGCTCTTCTCATTAATTCAGAATCAGATGATGAGAATGAAGCAGTGCACAACAGTGGTGTGAGACGGCTACATAAACCACGTCCAGCATATGTTCAACCAAAGAGGACAGAGTTCCCTTTTCTACAAAAGTGTAAGAAGTTTCGCTTTGGAAGACTGCCTGTCTGCAAGAACCAGGTTCTAGTGAATTCAGAGATCGGGGGCTTCTTTAAATGTGTACAGAAAATCAGCCAGGGAAATGAAGTGCAAAGAACAGAGCTAAGTCCAGCAGTCTCTTCATCTGTGCGGGAAGAAGAAAGTGTGGAAGAAGGGAGCAAAGAGGAGGACCATggaaatgatgatgatgatgatgatatcaGAGTAGTGGATGcagaatgttttattttcaacaCCGGTGTAAGAAACAGACAACCGTGGCTTCCGAAAACAAGATGGACAGTGAGActgaacaaagaaaaaaaggaagaaaaaaacaaacagaagcaaAAGAGTCAAAAACAGAAAGGTGCTAAAGGAAAAACAGGAGTTCAAAAGCAAAAAGCAAAGCAGCAAACAGAGATCCAGAAGAGATCACGCACCAATGAAACATCACAGTGTAACAGCAggacagaaaagcagaaaagtgGCACCACTGTATCCAGGAACTTAGTCTCTTCTCCTGAATGTTCCAGCATGAGACATTTACTTCTGGACCAAGAGGAACACAGTGAGAAACAGCTGGACGTTTTGGCCACATGTTCTCAGTCTGTAGTACAAGTTGTAGACCATCATTTTCATAGCAGATCTCATTCAGCCCATCAATCTGCTGAGACGTGTGCTGCGAGTGTGCCAGAAGGAGAATTGGACGATGAAAGAATGGTTGAGGAAACACAAATGCCAGACTCTGACCAGACTTTAGTGGAAGCTGAGGAAACACATGTTCTTGAAATGGTGGAGGATAGATCGAAAAAGGTTGGTGAAGATGGAAGATATTTGGAAAACCTCCCATTTAGAGAACCTCGGGAGAGTGACAAGGATCCCGGTGAAGAGGGACATCATGAAGTGCAGGATCATGAAGACTGTGGGGATTCTATAGGTTCAGCGGATCTGTTTGGGGAAGAGGGGAATCAGTTTGATGAACTTATTGATGCACCCAGTTTGACAGATGAGATAAGACCTAGGGATGGTGATGAAAACCAAGAAAGTTGTGTGGTACAGTGTGACGAGGGAAGCCCAGTGAGAGTGGAGAACACTGTGGCTAAACAAGCAGAGATAGCCATAGAAACAGAAAGCCCGCTGTTTAATTATGGTGGTATGACCTTTTTAAAATGGAGGAAAAGAAAAACGTCGGAAACATCTGAAGTCTCTCATAGCTTGCTTTCAGATGCAGGTCAATACAACAGATCGTCTACATATGATGATGCTTGTGggcaaaagaagagaaaaacatCAAGTCATTTGGATAAGGATGGCAAAggtgaggaggagaaggaggaggagaagaagaggagtCTTGATGTCAGGTTATCACAGGAACCAGCACAGGCCTCGTCAATATCTGAAGCAAACTTCCCTACAGGAGCAAAAGAAAATTGGACagttgagaacaatgttcaatcTTGGTCTTATAGCAGTGATGAGACGTGTATAGAAGAAGATAATCAGATTACACGTCCGACTTCAGAAGGTCTACTGTCTgtagctgcagctgcagctgtaACTGAACCTGAACCATCAACAGCAAGTAAGCTTTCTACTCCTGTAAGGACTGGAGAAGAAGTTCAGCAGGATGATGGCAGCCCAGCGAAGAGTCTTGTCCAATCACAGGAGTTTGGACCACTAAATACAAAGAAAGCAAAGAATGCTAATGATATGCAAACGATGGACTATGCCAAACAGGTTGAGTCAAGCCTTGGTACTACAACACAAAAACCTGTGGAGACGTCAACCCAACCAGGATTTCTAGAGAACAATGATGTAGAAAGACCAGAAAGAGAAGACATTTCTCCTTCCACAAGTACTCAGTCAGATCATACAGTGGAACCTTTAAAAAGCTGTGATGAAGAAGCTAAtagagaaaaacaaatattttgcaAAGACATACAATCTGTTGACTTGGTTACACCAAAGAAGACTAAGACAAAAAAGAAGAGGCAGAAGATTGTTGAAGAAAGCCTGGATCCTGAGACAAGTCATATAGAAACGACAGGTTGTGATGAACAGCAAGTTACTGAATTAGTTCCAGAGAAACaacacaagaaaaagaaaaggaagagagagcatGATGTTgaagaaaatttaaaaatcacaGAAGCCAGTTCTATAGAAAACTACTAAGCAAGGTGAGGAGAAAATATtggaaaagaagaaaatattCTGTAAAGCTTACCATGTCAAAGCAGCAGAGAAATCTGTAGAGGTAGTTCAGGATTCTGAGAAGCAAACTACTGAATTGGTTcaagaaaacaaaatgaaaaagaagaagaaaaaaaagagagaacatgTTGTTGGAAATAATATAGGTGTAGAAGCAACAGAGCAGGTTGAGTCTCTAGAAGTAGTTCAGTACATTCCACAGCACATTGTTGAATCCattccagagaaaaaaaataagaaaaaacagaaagaacacgTTATTGAAAATAACGTAGGTGTAGAGACATGTCAATTAGAAGAAGCCGAACTAGTAGAAGAAGTACTGGAAGATTCTGTGAAGCAAacttctgaatcagttacagagaaaaaattgaaaaagaaaaaagaacaagtTGTAGAAAATAATTTGGGTGTAGAAGCAACAGAGACTGCCCAGGCTCTGGAAGGTGATGAAGCTTGTCCTGTAGAAGCAGCAAAGAAACCTGTAGAAGTATTTCAGGATTCTAAGAAGCAAActactgaatcagtttcagaCAACAAAttggaaaagaagaagaaaaagaaga

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007260371.3 True 3389 mRNA 0.42 5 11381002 11387605

Neighbor

gene id symbol gene type direction distance location
aspa aspa,LOC107665049,LOC107712162,LOC107595485,LOC107731059 coding downstream 10620 11347655 ~ 11370382 (-)
LOC103044364 LOC108412379 coding downstream 428903 10884853 ~ 10952099 (-)
LOC103029242 LOC103029242,LOC108414971,LOC108256685 coding downstream 1040813 10329090 ~ 10340189 (-)
LOC103028097 tnip3 coding downstream 1102669 10267658 ~ 10278333 (-)
mppe1 mppe1 coding downstream 1123129 10231513 ~ 10257873 (-)
LOC103045102 LOC103045102,LOC108427286,LOC106567973,LOC102213336,LOC101488131,LOC106603516 coding upstream 13911 11401516 ~ 11566079 (-)
akap10 akap10 coding upstream 180359 11567964 ~ 11588327 (-)
LOC103044795 ehd2a,LOC108427007,LOC108260244,LOC107595479,LOC107685737,LOC107712157,LOC107740518,LOC107587717 coding upstream 208763 11596368 ~ 11606026 (-)
LOC103043164 LOC103043164,LOC108428299,LOC108259900 coding upstream 232604 11620209 ~ 11625691 (-)
LOC103042846 NA coding upstream 243183 11630788 ~ 11636218 (-)
G17929 NA non-coding downstream 233594 11146405 ~ 11147408 (-)
G17921 NA non-coding downstream 320107 11050256 ~ 11060895 (-)
G17859 NA non-coding downstream 525931 10854626 ~ 10855071 (-)
G17845 NA non-coding downstream 837395 10540478 ~ 10543607 (-)
G17808 NA non-coding downstream 1037739 10342796 ~ 10343263 (-)
G18085 pex12,LOC107681885,LOC107710733,LOC107587685 non-coding upstream 392427 11780032 ~ 11781320 (-)
G18087 NA non-coding upstream 398627 11786232 ~ 11786601 (-)
G18114 NA non-coding upstream 492147 11879752 ~ 11880042 (-)
LOC103023588 NA non-coding upstream 576419 11964024 ~ 11970718 (-)
G18154 NA non-coding upstream 747815 12135420 ~ 12135738 (-)
abr abr,si:ch211-253h3.1,LOC107665039,LOC107712163,LOC107688618,LOC107731041,LOC103375456,LOC106567975 other downstream 46484 11085480 ~ 11334518 (-)
LOC107197924 NA other downstream 297203 11076238 ~ 11083799 (-)
LOC103047439 zswim7,LOC107665024,LOC107712139,LOC107740465,LOC107688637,LOC107731017 other downstream 300818 11016029 ~ 11080184 (-)
G17792 NA other downstream 1133684 10246675 ~ 10247318 (-)
mak mak other downstream 1371851 9995145 ~ 10009151 (-)
LOC103044489 LOC103044489,LOC108428292 other upstream 47831 11435436 ~ 11595523 (-)
G18037 NA other upstream 297382 11684987 ~ 11685391 (-)
orai2 LOC103026696,LOC108428392,LOC107685638,LOC107595471 other upstream 393907 11781512 ~ 11796151 (-)
LOC111191510 LOC108414110,LOC108437066,LOC108442041,LOC108437065 other upstream 1379494 12767099 ~ 12780581 (-)
fxyd2 NA other upstream 1423571 12811176 ~ 12816601 (-)

Expression


Co-expression Network