aspa (aspa,LOC107665049,LOC107712162,LOC107595485,LOC107731059)


Basic Information

Item Value
gene id aspa
gene name aspa,LOC107665049,LOC107712162,LOC107595485,LOC107731059
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 11347655 ~ 11370382 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007260372.3
ccGAGCGGGAGCATGACAGCGGAGCGCGCGCGCAGGGCTGTTATATAATAGCGCTCACCAACAACATCGACCAGTCCAGCCGGagcagcggcggcggcagcagGGCTGGGGGTCCAGTGACCGGACTGATTGAGAGCTAAGCAGCCTGGGTTATAGCTGTTGCGCTGTActcgctcctcctcctccacaggTGACACAGACCCTCGCCATGAGCTCGCGGGGGAGCCCTTCTTGTTTTCCTGAAGCCCGGCGGGTTGCTATCTTCGGCGGCACGCATGGCAACGAGATGTCCGGGGTTACTCTGGTCAATATGTGGATAAAGAACCGCGCTGAGATCGAGAGGAGCGGACTGACCGCCAGACCCTTCATAACAAACCCCAGAGCCGTGGAGAAATGCTCCAGGTACATCGACACGGACCTCAACAGAGCCTTCACCCCGGAAAACCTCAGCACACCGAGTGGAGATGGGCTGCCATATGAAGTTCAGAGAGCCAAGGAAATTAATCAGATCTTTGGACCAAAGGGTAGCCCAGACGCCTACGATGTCATCTTTGACCTCCACAACACGACATCCAACATGGGCTCCACCCTCATCTTGGAGAGCTCTACAGACCACTTCAACCTACAGATGGTGCAGTACATTAAAAAAGCCATGGCTCCAGAGAGCTGCATGGTACTGCTGAACGAGCACCCTCACCTCAAGTATTCCACCAGCCGCTCAGTGTCCAAGCACCCTATAGgTCTTGAAGTGGGTCCTCAGCCACAAGGAGTTTTGAGAAGCAACATCTTCGAGTCCATGCGAGCAATAATGAAGCACGCGCTGGACTTCATTGAGCTGTTTAACAGCGgTGTGGAGTTTCCAGCTTGTTCTGTAGAAGTGTTCAGAGTGCATGAAAGAATGGACTACCCCAGAGACACAAACGGCAACATCACGGCTATGGTTCATCCACATCTGCAGGACTGTGACTGGGAGCCGCTAAATCCGGGTGATCCGATGTTCCAGACGTTTGATGGCAGGACCATCCTGTATGAAGGTGTCAGTCCGGTGTACCCCACGTTTATTAATGAGGCCGCTTACTACGAGAAACAGCAGGCCTTCGTCACCACTCGCAGGGAGACGTTAGCAGCCAACAGCATTCGAAAAACCTCCACATAACCACCAGCATCACTCCTCACTTATAACatgcattaatttacagtggaaaaaagagaactttGTGTGTTTTAGTTAATGAAAGAttactgttcactttgatactagattttatgttgattatataaaactgcaaacaaaaaagtaacacacatttgaattttatttcttgttgatttacatttttcagactgATTCAAATCCTAGTCTAACAAAAGAAATGATCTATTTGCAATACAGAGAAAACGtcagatatttttatatgtgCTTTTAAGTTTTCTTATGACTCACATTTTTCTAATGTAACAGTGATGCAGCTTGTGTTCACTGATTTTATGGTACATTAGGGCACATTCactttgcatttacatttatagcCATTGGTTTCAAAGACTCTGATGAACTTGCACATTTAAAGTCTAATTTTTCGTGCTTCATTTACCAGACAGAACCTCAGGAACACACAAATCTAGAAACATGTCGTCATCTGCCTCTTCCTCTGCACTGTCTAGTCTCATAACAGAACCTCCAAGCTAGGTGTCTCTCTTCTGGAGGAAGGGAGGGGAGATTGAAGATGGGAATGGTTAGGTGCTTTCAGATCCCGTTTGAGCTtgttgtgttttcacactatgTAGGATCCCTTCCCCTGTAAATTAGTACTAACGCACATATCAACCAGACCAACCAAGGCCTTACAATAACCAACCACAAGAGAACCTCTTAAGATAACTGCTGCTGATAGACAGGGTATGTGTAAACCCCTTAAACTGCCAGCACAACCATCTAATAACCAACTGATATACGTACTATAGAGACCAAAGGcatatagcaaccacttggaaccATTGCAACAATTTAGCATCAGCCTTCCTTTGAAGggcatagcaacacctcatGGGATATCATAGCATCTACTTAATGCCAGCAAAGCAACTGcctgaaaaacacacataaatcaCCTGGGATATCTGCTTAGCCACAGACACATAGCAACCCTAGCAACCCAAAACCCTAGCAGTCATTTAGCATACTACAGCATATCAATCACAACATATGCAACAACAAAGCAACTCCATACCtacctaataaaaaaatagaacccatgtggaacaccatagcaactgcccaGCAGCCACCAAGCAGCTGCTTAACAGCAGCATTGGATCCACTTTGAAAGACATAGCAAACACCCTAGAAGCACCCTAGCAACTATTTACtagcagcatagcaaccacccagcaacccCACTGCAACCATCTGGGATTCAGTAGTCACCACAcaagcaacagcatagcaagcACTCTAAACAAGATGTCAACTGTtaagcaacagcttagcaacaacatagcaacctcCTACCAAGTCCTTGACTACCACTTAGCAACAGTATAGCAATAAGCTTAAACACACCGCAACCACCTAACAGCCACTTGGGGAttgtttctctgcatttttgtatttgttctgttatttggtAATGTTACCTTGAGTTATTCAGTAAATTATATGAAATTAATATATAAGATATGTAGTTGTGAGAGAAAATAATTGAAAAGGTTACAAGATGCTTTAGCTTTGCAGAAACTGCTGCATTTCCCTATAAAAGAACAGAAGAACTGTTGACCCAAAACAAACATGCACCCAATCGGACACAAGTAACCCATATAGCATGATCAGTTGTTGGCTCTTGCAGAGTAGCTGTTGACTACAATTAAACACTATATTAATGCAGCAACTATTTTTGTAAATGGTTGTATCTGCTGTTATTTGAAATCAACAATTTCAACAATTTGACATAGCTCTTTATGTCGTatcaaaatgttaatattagaaTGTTAGAGATTAGGCTGAAACCACTGGATTGCTAAAGATGTACAGGTTCAAGTTAAAGGGGTTAAGAATTGAATGAATTGTTTATGGTGTACAGTGATCTGTACCTCAGTGTGTGCACTAATTTGTATCGAAGAAATGTTATAATCTTTAGTCTGTGTCTGTTCTGTGGTCAGTGTGGTCCAGTTAGGCCTTTATGTGGTCCGTTCTTCCTTTTTCACTTGTGTGTAGAAGAACTATGTGTTCCATTGTCTCTGTATTCTCGTGACCGTCCAAAACAGGAAAGTAAACACCAGCTTtgttttgactggtgctgtctTGCCATTGCCTTAAGAACAAGCTTAGACTAGAATAGCTCTGGTCAGGCTGGTAAAAATGGGAAAAGATGAAATGTACAGTTCCACCATTTGGTGTCTGATAGGAACAGATGGAGCAAGCGCTTATTTGGTCGTACTGTGGTATTGTCATTGTGCAAGTCAGATGTATACATTGTGGtattaatccacagttaatGAAGGGTTGACTTAAATAGTCACGTTTGTTGTATGTAGTGAGAAATTGTGCAATCTATCCACTGTGATAAATgacctgtttctgtttttaaatgctttaatccttctagtgtgtaatattttgtaCTTAATAATGAGAGAGATTTTAACCACAAAGCTCTAAATGATCATACTGACCTATGCAAAGAATATTGTATACCTATATGTTGCACATAGTGTCTGTTTCTAGATTCATTCTGATGTATAGTGCTTACTGTTCCTGGACAATCAAGATGTTAAagtttaaatatgtataactTTAATTTTAGTCTATTCTATATTTGTAAGATATAGCCTTTTATTACATTGATTAATTATGAGTGAATCATttgtaataaacatgttttagttGCCCACT

Function

symbol description
aspa Predicted to enable hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides. Predicted to be located in cytoplasm and nucleus. Predicted to be active in cytosol. Human ortholog(s) of this gene implicated in Canavan disease. Orthologous to human ASPA (aspartoacylase).

NR:

description
aspartoacylase

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0019807 aspartoacylase activity molecular_function
GO:0046872 metal ion binding molecular_function
GO:0016788 hydrolase activity, acting on ester bonds molecular_function

KEGG:

id description
K01437 ASPA, aspA; aspartoacylase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007260372.3 True 3892 mRNA 0.42 6 11347655 11370382

Neighbor

gene id symbol gene type direction distance location
LOC103044364 LOC108412379 coding downstream 395556 10884853 ~ 10952099 (-)
LOC103029242 LOC103029242,LOC108414971,LOC108256685 coding downstream 1007466 10329090 ~ 10340189 (-)
LOC103028097 tnip3 coding downstream 1069322 10267658 ~ 10278333 (-)
mppe1 mppe1 coding downstream 1089782 10231513 ~ 10257873 (-)
elovl2 elovl2,LOC101268971 coding downstream 1229047 10103179 ~ 10118608 (-)
LOC103046022 NA coding upstream 10620 11381002 ~ 11387605 (-)
LOC103045102 LOC103045102,LOC108427286,LOC106567973,LOC102213336,LOC101488131,LOC106603516 coding upstream 31134 11401516 ~ 11566079 (-)
akap10 akap10 coding upstream 197582 11567964 ~ 11588327 (-)
LOC103044795 ehd2a,LOC108427007,LOC108260244,LOC107595479,LOC107685737,LOC107712157,LOC107740518,LOC107587717 coding upstream 225986 11596368 ~ 11606026 (-)
LOC103043164 LOC103043164,LOC108428299,LOC108259900 coding upstream 249827 11620209 ~ 11625691 (-)
G17929 NA non-coding downstream 200247 11146405 ~ 11147408 (-)
G17921 NA non-coding downstream 286760 11050256 ~ 11060895 (-)
G17859 NA non-coding downstream 492584 10854626 ~ 10855071 (-)
G17845 NA non-coding downstream 804048 10540478 ~ 10543607 (-)
G17808 NA non-coding downstream 1004392 10342796 ~ 10343263 (-)
G18085 pex12,LOC107681885,LOC107710733,LOC107587685 non-coding upstream 409650 11780032 ~ 11781320 (-)
G18087 NA non-coding upstream 415850 11786232 ~ 11786601 (-)
G18114 NA non-coding upstream 509370 11879752 ~ 11880042 (-)
LOC103023588 NA non-coding upstream 593642 11964024 ~ 11970718 (-)
G18154 NA non-coding upstream 765038 12135420 ~ 12135738 (-)
abr abr,si:ch211-253h3.1,LOC107665039,LOC107712163,LOC107688618,LOC107731041,LOC103375456,LOC106567975 other downstream 13137 11085480 ~ 11334518 (-)
LOC107197924 NA other downstream 263856 11076238 ~ 11083799 (-)
LOC103047439 zswim7,LOC107665024,LOC107712139,LOC107740465,LOC107688637,LOC107731017 other downstream 267471 11016029 ~ 11080184 (-)
G17792 NA other downstream 1100337 10246675 ~ 10247318 (-)
mak mak other downstream 1338504 9995145 ~ 10009151 (-)
LOC103044489 LOC103044489,LOC108428292 other upstream 65054 11435436 ~ 11595523 (-)
G18037 NA other upstream 314605 11684987 ~ 11685391 (-)
orai2 LOC103026696,LOC108428392,LOC107685638,LOC107595471 other upstream 411130 11781512 ~ 11796151 (-)
LOC111191510 LOC108414110,LOC108437066,LOC108442041,LOC108437065 other upstream 1396717 12767099 ~ 12780581 (-)
fxyd2 NA other upstream 1440794 12811176 ~ 12816601 (-)

Expression


Co-expression Network