prkaa2 (prkaa2,LOC107716554)


Basic Information

Item Value
gene id prkaa2
gene name prkaa2,LOC107716554
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 72013255 ~ 72031640 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007260659.3
TGAGGCACATTTCTCCGGTCATGCTGATCTGAGGTCGGGTGAACCTGAAGCCGCTCGCGcgccgggcggagccccgcccccctccTCTCGCCGGCCGAAGCGAGCAGCGAGCTGCTGCCCCGCAGAGTAAAATGGCCGAGAAGCAGAAGCACGAAGGCCGGGTGAAGATAGGACACTACATCCTGGGGGACACGCTCGGAGTGGGCACCTTCGGCAAAGTGAAGATTGGAGAGCACCAGCTTACAGGACACAAAGTTGCTGTTAAGATTCTGAACAGGCAGAAGATCCGCAGTCTCGATGTGGTCGGCAAAATCAAACGAGAGATCCAGAACCTCAAGCTGTTCCGACATCCACACATCATCAAGCTGTACCAGGTGATCAGCACTCCCACAGACTTCTTCATGGTGATGGAATACGTGTCTGGAGGAGAGCTCTTTGATTATATCTGTAAGCATGGAAGGGTGGAGGACAGTGAGGCAAGACGATTGTTCCAGCAGATCATCTCAGCAGTGGACTACTGTCACAGACACATGGTGGTGCACAGAGACCTGAAGCCAGAGAACGTGCTACTGGATGGAAGCATGAATGCAAAGATTGCTGACTTtggcTTGTCAAACATGATGTCTGATGGGGAGTTCTTGAGAACAAGCTGTGGATCACCTAACTATGCAGCTCCAGAGGTCATCTCTGGAAGACTCTATGCAGGTCCAGAGGTGGATATCTGGAGCTGTGGCGTGATCTTGTATGCACTGCTTTGTGGAACTCTGCCCTTCGATGATGAGCACGTTCCCACACTCTTTAAGAAGATCCGTGGAGGAGTTTTCTACATCCCGGAATACCTCAACCGCTCTGTGGCCAGCCTGCTGATGCTCATGCTTCAAGTGGACCCTCTGAAGAGAGCCACAATCAAAGACATAAGAGAGCACGAGTGGTTTAAGCAGGATCTGCCTGGCTACCTGTTTCCTGAAGACCCCTCCTATGACAGCACAGTGGTGGACGAGGAGGCTGTGCGGGAGGTGTGTGAGAAGTTTGAGAGTACGGAGGCAGAGGTTCTTAGCAGCCTGTACAGCGGAGACCCTCAGGACCAGCTGGCTGTGGCCTACCATCTCATTATTGACAACCGTCGCATCATGAATCAGGCTAGCGAGTTCTACCTGGCCTCCAGCCCCCCGACAGGCTCCTTCATGGAGGAAGGTATGCCCCTGCCCCCAGGAGTGAAGCCTCACCCTGAAAGGATGCCGCCCCTTCTGGCTGACAGTCCAAAGGCCAGGTGCCCCCTGGATGCCCTGAACACCACAAGACCCAAACCACTGGCTGTGAAGAAAGCCAAGTGGCACCTCGGGATCCGCAGCCAGAGCAAGCCATATGACATCATGGCTGAGGTATACCGTGCCATGAAGCAGCTCGAGTATGACTGGAAGGTTGTGAACCCGTATCACCTGAGAGTGCGCAGAAAGAACCCAGTCACTGGTAATTTTGTGAAGATGAGCCTGCAGCTTTACCAGGTGGACAACCGTAGCTATCTACTGGACTTCAAGAGCATTGATGATGACATCATTGAGCAGAAATCCGGTTCGTCCACTCCTCAGCGCTCCGGCTCGGCCGCCGGCCTCCACCGGCCCCGCCTCAGCATCGACTCTGCGACCGTTGCTGTGGAGATGCCGCAGCTGAGCAGCTCGCTGCCGGGCTCTCTCCCGGGTTCTCTGCCTGGTTCTCTGCCGGGCAGCATGCCAATGTTGGCACCACGCCAGGGCAGCCACACCATGGACTTTTTCGAGATGTGCGCCAGCCTCATCACTACATTGGCTCGctgagctacacacacacacacacatacatttacacacacacatttacacacagtgATGGGAACCCCTGAGGAAGCTAGGGGTCAAAAGTTATGGATCATGGCCTCTTGAGCAGGGGTCACATGTAAGTCGGACCCTCTGCAGAGCCTGCAGCCACAATTACGTTTCACTCACATTACTCTCAGCCATAATAGCAAAATTCTCCAGCAGGCCACAGAGCCCTTcatctgttttattgtttttatatatacatctatatatatatataatgttttgatAACACTGATTATGTTATACATGTATTATACAGTCTATTTATAAGACTCGCATATAGATCACTTTAGTCAAACTGCTGTTGATTGCGATGACATAccaaaaattaagtttatatgCATACAAAGAGAGGTGATTATAATTTAGTTAGATAtcagattatttattattcagagATTCTTTATGCTATTTAGTTGCATTATTTAAGCACTAACCTGTGGAGCGAGTTTGGAATTAAGAGCAAGTGTTCTGAGCAGCGGATGTTAGCGTTGAGGCAATACGTgcatgtaaagcactttgagcaCAAAACTCAGTATCATCATTGCTTTACTTGCATTGGCAGGGGTTTATATGCAGTTATTCAAGtgattttacatttacttatcACTAAGTGTGACGTGGCATTTTCACTGTTTTGTGCTTTGCCCCTCTCTGTTCATTTCCTACTGACTATTAGTCATGTCATAGACTCATAGAGTGGGATAGGTTTGTGTGATGATGCCTTAAATCCGTGGAAGTGCACCGCTATGAAAAGACGAAGGTGTTGGGCGGGAAGCGGAGGGGATAGCCAAAGCCTAAACATGGTGCCTTGTTTTGGCTAAAAGAGGCAGAGCACAGAGTGGGAGATAGTGGGTGGGAGAGTTTGACTGGGTGCTGTGTTCAGCTAAGCCTGAGACTCCAGACTGCACCACACATTGGCCTTGGCCTCAAAGGGGAAATGcagtataagagagagagagagatttacagCCTGATATATatgagagagagttagagacaGTATATAGTGAAAGGAATATTTAGgcggtaaaagtgg

Function

symbol description
prkaa2 Predicted to enable protein serine/threonine kinase activity. Predicted to be involved in intracellular signal transduction and protein phosphorylation. Predicted to act upstream of or within Wnt signaling pathway and rhythmic process. Predicted to be located in cytoplasm. Predicted to be active in nucleus. Human ortholog(s) of this gene implicated in type 2 diabetes mellitus. Orthologous to human PRKAA2 (protein kinase AMP-activated catalytic subunit alpha 2).

NR:

description
unnamed protein product

GO: NA

KEGG:

id description
K07198 PRKAA, AMPK; 5'-AMP-activated protein kinase, catalytic alpha subunit

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007260659.3 True 2898 mRNA 0.50 9 72013255 72031640

Neighbor

gene id symbol gene type direction distance location
LOC103032944 tmed5,LOC108415774,LOC107733818,LOC108258151,LOC105910820,LOC107581519 coding downstream 823280 71180928 ~ 71189975 (-)
pigc pigc,LOC107581520,LOC107697628,LOC107712841,LOC107597814 coding downstream 836049 71174229 ~ 71177206 (-)
ccnk ccnk,LOC107560198,LOC107555300,LOC107678663 coding downstream 907436 71099602 ~ 71105819 (-)
trnat-ugu_81 NA coding downstream 916552 71096631 ~ 71096703 (-)
LOC103038639 ism2 coding downstream 926298 71077110 ~ 71086957 (-)
bloc1s2 bloc1s2,LOC107697361,LOC107716556,LOC107581516 coding upstream 367151 72398791 ~ 72402415 (-)
pcsk9 pcsk9 coding upstream 467082 72498722 ~ 72518295 (-)
bsnd NA coding upstream 491025 72522665 ~ 72527600 (-)
lexm NA coding upstream 539839 72571479 ~ 72579512 (-)
LOC103032851 NA coding upstream 581798 72613438 ~ 72619980 (-)
G32386 NA non-coding downstream 724020 71260995 ~ 71289235 (-)
G32389 NA non-coding downstream 732850 71279620 ~ 71280405 (-)
G32375 NA non-coding downstream 755336 71254340 ~ 71257919 (-)
G32346 NA non-coding downstream 850191 71161302 ~ 71163064 (-)
G32344 NA non-coding downstream 920042 71090501 ~ 71093213 (-)
G32524 NA non-coding upstream 50074 72081714 ~ 72084284 (-)
G32536 NA non-coding upstream 117943 72149583 ~ 72149787 (-)
G32538 NA non-coding upstream 118180 72149820 ~ 72150284 (-)
G32565 NA non-coding upstream 275756 72307396 ~ 72308300 (-)
G32567 NA non-coding upstream 282701 72314341 ~ 72314797 (-)
G32492 NA other downstream 31202 71970504 ~ 71982053 (-)
G32364 NA other downstream 870917 71138486 ~ 71142338 (-)
G32343 NA other downstream 923794 71088875 ~ 71089461 (-)
LOC103033556 LOC108410406 other downstream 970073 70917981 ~ 71043182 (-)
sec63 sec63,LOC107726621,LOC107696131,LOC107726458 other downstream 2851351 69145308 ~ 69161904 (-)
G32557 NA other upstream 209890 72241530 ~ 72242270 (-)
G32611 NA other upstream 496143 72527783 ~ 72542447 (-)
G32714 NA other upstream 666033 72697673 ~ 72698010 (-)
pla2g7 pla2g7,LOC108440964,LOC107553425,LOC107696191 other upstream 772353 72803993 ~ 72813530 (-)
LOC103026087 NA other upstream 838068 72869708 ~ 72919297 (-)

Expression


Co-expression Network