plpp3 (plpp3,LOC107712879,LOC107716555,LOC107697342,LOC107657212)


Basic Information

Item Value
gene id plpp3
gene name plpp3,LOC107712879,LOC107716555,LOC107697342,LOC107657212
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 72036206 ~ 72084245 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007260660.3
GAAGGGAGTCTTAAAACTGGAGTTGGAGCTCCTGCGCTTTTTAAAACGCCGCTCTCGCTCTTCTCCCCTCAGAAAGCCCTCCAACACTAGAGAAGTGGACTCAAGTTCTCCTCCActcactgacttactgactgaaaacacacactgaccggGGGGCTGCTGTCTTCATCCCACAGACCGAGAGACGGTGACCGTGAGGCGGGTTATTATTCACTCTACACACCGGTTCAACGGTTCAACATTCAGCAGGACTTCACTCCTCCTCTGAATATCAACTTTTAAGGACTTTTTCTCCTCAAACGAGCCGGACCTCGCCTCCCATCTTACCTTCTACATTTATCTATCTTTTTAtctgagtgactgactgagtgaGCAAGCTGAGTTTGTGCTCGTGTGGACTGAGGTTTCTGTACAGCAGGAGGACGGAGCTCTCACATGCCAAAATACATGTATGAGAAGGCGATGGCACCCGAAACAAGAAACGGTGGAACTGCGACGTTAAATAGCAGCACTGGCATGAACAAGAGCAAGAGGAAATTTTTAATAGCTCTAGACATCTTCTGCCTGCTCCTAGCTGGCCTGCCTTTCCTGTTAATTGAAACTAGCATGATCGAGCCATACCGCCGTGGGTTTTACTGCAGTGACCAGTCCATCCGCTACCCGTATAAAAATGAAGACACCATAAGCGATGCCGTGCTCTGTCTCGCTGGCATTCTTATTGCCATCTTATCTATTGTGATCGGTGAGTGCTATAGGATCCACTACCTGAAGCAGGGCACCCAGTCTTTTGTGGGCAACCCCTACGTCTCTGCCCTCTACAGGCAGGTGGGCGTGTTTATCTTCGGCTGCGCGGTCAGCCAGTCCTTCACGGACATAGCCAAGGTGTCGGTGGGCCGCATGAGGCCACACTTCCTGGATGTGTGCAAACCAGACTACACCACTATCAACTGCTCCCTCGGCTACATCACCGAGTACACCTGCCAGGGTAATTCCAGCAAAGTGCAGGAGGCCAGgAAATCCTTCTTTTCTGGACATGCCTCATTTTCAATGTTCACCATGCTGTACCTTGCAtTCTACCTGCAGTCTCGGTTCACATGGCGTGGAGCTCGACTCCTGAGGCCTCTCCTCCAGTTCACTCTGTTGATGATGGCCTTCTACACTGGTCTGTCCCGCGTCTCTGACCACAAGCACCACCCGACTGACGTGCTGGCTGGATTTGTACAAGGAGCACTTGTGGCCTACTGCATAGTCTTCTATGTGTCTGACCTGTTCAAGCCCAAAGTGAAGACCGCCACTCCTCCGCCCTCGCCAATCAAAAAGGAGCTCCTCCCCTCGGCCGACATCATAGACAGGAACAACCACCACAACATGGTGTGAGCGGAGGGCGGCGGGAGGAACCATCTTTAACACCCTCCCCGACCCACCTCCTCTGAAGAAACCTGAACAGCCACCTGTGACTGAGGAGCAGCAGCACTTaagctgtttctctctctctttctctcatctgACAGTAGAATGTAGAGGCAGGAGACAGAGACCTTTAACTATTGAGactcttttattgttgttgtttttttttaataccttaTTCACGATTCTCGCTATTCTTCATTTTGAGCCCAGTTCgcacacacataaacaaagctaaatatatAACGTACAGAAAGGAACTCGTTACTTGGGATTTTGTTACTTCCCAAAATAGTGTGGACTAAAGTGGGCATGCAACTTGGTTTGCAGCACACTGAATGGAGTTATAAGGGCTAAACaaaagaacagagtgaaaagaATATGAAACTTGGACTAATGaatgactgaatgaatgggtggatgcTTGAATGAATGAAAACAAAAGGAAGAAGAGTGTGACTGTGAGGCTGGTCATATGAccagtgtctgtctctctctgcctccctctctctctttttttgtctgtctACGTGTCTCACTTTGtgtctcacttttttctctttctctcttgtctctGAGGCCTTTTCTAAGTATAGGACAACAAATTCCTTAGTTATAGGAACGATTCTTTTACCTGCAGTGTTACTAGCACAGATATATTAACAGTATAAAGACCAGTAACTTATAGCACTATATCCATTGAGTCCATTGTAAATCGTCACCACTCGCTGTCTGAGGGGTGTAGCTTTGGAGGAGCTTGGTGCGGTTTCTAGTGCATGGTAGACTGAAAAATGAACTTACACTGTGGTGTATGGCACTCCCTGAGAAATAGGGGGGCTTTGAACACACACCATTATGATGCATAGACACTCCTGAGCACTAGACCCATCAATGCTGCCCTTAGCTACCCGCACAGTGGCCTAGCTCCAAGAGATGTTGCATTTcactgggatttttttttattaaggggTGGTCTGAGGGGGGAGTTGGGGTgttttagaaaagaaaatgatggAAATCAAAAAAAGGTTTCTAAATCTTGAATTCAAGATGGATGTTGCCCATCTGCAGCAGTGTTGTGAGAGCATGGCTGAGCCGTGCTTCTGCGTTGTGTTTCCGGGAGGGGTGGGGAGAAAGGTGAGGGGTGGTGGGATTGGGGGaacttttacatatattttcccGTCACCAGGGTCGTTTGGGGTCGAGACCCATCGACTGCACTGGCTTTGGCACATTTATATTTGGGATGGGGAGAACGAGCCTCTTCTGCTGGCTAGTATTGACTCTTCTCCCGTCCAATCACATAATCACTCAGCAGCAGCCGTGCCATTCACAGCTTTGGCCAGTGGTGGCGCTAATTGAAGTATCCCCCAGCAAGTGCcccacttgtgtgtgtgttttggtgtatgGGGAAAGGGGGAGGGAGGTGGGTCCCCACCAGTTACTCTGTGCCATGTGttgtgtatgcatgtatgtgtgctcgtatgtatgtatgtttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtcactatGATTCTGCACGTGGTCCTTGACCTCGTGCAGAGCACTATTAAccatgtgaagaaaaaaaaacatgaaagaaaactgtggatttttttttctctctctctctttctctttatacgCCTCTCTTCGGCCTTTTCCCTTCTCTAAATGACGTCTACTGTCCTCACTAACAGCTGTACAGTTCTGCCAGATTATTTTACCGTATACACAGCATACGCCACATCTACACAACCCAACACGCCACACAGCCTCCGACATGTTGCACATCCCCGCACATTGTATAGTCCGTCCTATCATTTCAGCaagctgttttattttctccttttaaatatataaataatgta
>XM_007260661.3
aGGGAAGGGAGTCTTAAAACTGGAGTTGGAGCTCCTGCGCTTTTTAAAACGCCGCTCTCGCTCTTCTCCCCTCAGAAAGCCCTCCAACACTAGAGAAGTGGACTCAAGTTCTCCTCCActcactgacttactgactgaaaacacacactgaccggGGGGCTGCTGTCTTCATCCCACAGACCGAGAGACGGTGACCGTGAGGCGGGTTATTATTCACTCTACACACCGGTTCAACGGTTCAACATTCAGCAGGACTTCACTCCTCCTCTGAATATCAACTTTTAAGGACTTTTTCTCCTCAAACGAGCCGGACCTCGCCTCCCATCTTACCTTCTACATTTATCTATCTTTTTAtctgagtgactgactgagtgaGCAAGCTGAGTTTGTGCTCGTGTGGACTGAGGTTTCTGTACAGCAGGAGGACGGAGCTCTCACATGCCAAAATACATGTATGAGAAGGCGATGGCACCCGAAACAAGAAACGGTGGAACTGCGACGTTAAATAGCAGCACTGGCATGAACAAGAGCAAGAGGAAATTTTTAATAGCTCTAGACATCTTCTGCCTGCTCCTAGTCATGCTGCCCTCCATGGTGCTGCACAAATCTACAGTACAGCCGTACCAGCGCGGCTTCTACTGCTCTGACGACAGCATTCGCTACATCTATAAGAACAGCACTGTGCCCTCGTCCGTGCTGATGGCCGTGGGCCTGCTCCTGCCCCTCACCAGTATTGTGATCGGTGAGTGCTATAGGATCCACTACCTGAAGCAGGGCACCCAGTCTTTTGTGGGCAACCCCTACGTCTCTGCCCTCTACAGGCAGGTGGGCGTGTTTATCTTCGGCTGCGCGGTCAGCCAGTCCTTCACGGACATAGCCAAGGTGTCGGTGGGCCGCATGAGGCCACACTTCCTGGATGTGTGCAAACCAGACTACACCACTATCAACTGCTCCCTCGGCTACATCACCGAGTACACCTGCCAGGGTAATTCCAGCAAAGTGCAGGAGGCCAGgAAATCCTTCTTTTCTGGACATGCCTCATTTTCAATGTTCACCATGCTGTACCTTGCAtTCTACCTGCAGTCTCGGTTCACATGGCGTGGAGCTCGACTCCTGAGGCCTCTCCTCCAGTTCACTCTGTTGATGATGGCCTTCTACACTGGTCTGTCCCGCGTCTCTGACCACAAGCACCACCCGACTGACGTGCTGGCTGGATTTGTACAAGGAGCACTTGTGGCCTACTGCATAGTCTTCTATGTGTCTGACCTGTTCAAGCCCAAAGTGAAGACCGCCACTCCTCCGCCCTCGCCAATCAAAAAGGAGCTCCTCCCCTCGGCCGACATCATAGACAGGAACAACCACCACAACATGGTGTGAGCGGAGGGCGGCGGGAGGAACCATCTTTAACACCCTCCCCGACCCACCTCCTCTGAAGAAACCTGAACAGCCACCTGTGACTGAGGAGCAGCAGCACTTaagctgtttctctctctctttctctcatctgACAGTAGAATGTAGAGGCAGGAGACAGAGACCTTTAACTATTGAGactcttttattgttgttgtttttttttaataccttaTTCACGATTCTCGCTATTCTTC

Function

symbol description
plpp3 Predicted to enable lipid phosphatase activity and phosphatidate phosphatase activity. Predicted to be involved in canonical Wnt signaling pathway; phospholipid dephosphorylation; and phospholipid metabolic process. Predicted to act upstream of or within regulation of Wnt signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Is expressed in somite and vasculature. Orthologous to human PLPP3 (phospholipid phosphatase 3).

NR:

description
PREDICTED: lipid phosphate phosphohydrolase 3 isoform X1

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0003824 catalytic activity molecular_function

KEGG:

id description
K01080 PLPP1_2_3; phosphatidate phosphatase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007260660.3 True 3293 mRNA 0.47 6 72036209 72084245
XM_007260661.3 False 1610 mRNA 0.52 6 72036206 72082562

Neighbor

gene id symbol gene type direction distance location
LOC107197929 NA coding upstream 38565 71988157 ~ 71997641 (+)
LOC111191308 LOC108415780 coding upstream 334912 71698448 ~ 71701294 (+)
oma1 LOC107581495 coding upstream 696906 71316242 ~ 71339300 (+)
mysm1 mysm1 coding upstream 721730 71302470 ~ 71314476 (+)
scrn2 scrn2,LOC107697287,LOC107581469,LOC107733816 coding upstream 750180 71278318 ~ 71286026 (+)
LOC111191956 NA coding downstream 122702 72206947 ~ 72208136 (+)
dhcr24 dhcr24,LOC107581458,LOC107687183,LOC107566150 coding downstream 475112 72559357 ~ 72567455 (+)
LOC103033168 si:ch211-121a2.4,LOC103033168,LOC108416079,LOC107581514,LOC108257924,LOC107687197,LOC107712847 coding downstream 519968 72604213 ~ 72610182 (+)
sirt5 sirt5,LOC107687181,LOC107712885,LOC107581456 coding downstream 542995 72627240 ~ 72636248 (+)
LOC111191362 LOC108416099,LOC107559745,LOC107712833,LOC108248366 coding downstream 570574 72654819 ~ 72679083 (+)
LOC111191996 NA non-coding upstream 573329 71457906 ~ 71462877 (+)
G32379 NA non-coding upstream 744347 71261305 ~ 71291859 (+)
G32219 NA non-coding upstream 904165 71129690 ~ 71132041 (+)
G32210 ccnk,LOC107560198 non-coding upstream 930415 71103225 ~ 71105791 (+)
G32174 LOC108410406 non-coding upstream 1076449 70945974 ~ 70959757 (+)
G32535 NA non-coding downstream 65030 72149275 ~ 72149476 (+)
G32539 NA non-coding downstream 66323 72150568 ~ 72150791 (+)
G32556 NA non-coding downstream 158240 72242485 ~ 72242811 (+)
G32570 NA non-coding downstream 238416 72322661 ~ 72323006 (+)
G32579 NA non-coding downstream 278706 72362951 ~ 72363341 (+)
dab1 dab1,LOC107581465 other upstream 55843 71463100 ~ 71980363 (+)
G32229 NA other upstream 866650 71167524 ~ 71169556 (+)
G32225 NA other upstream 895022 71137512 ~ 71141184 (+)
G32198 NA other upstream 960320 71073848 ~ 71075886 (+)
G32151 brox,LOC107710643,LOC107732498,LOC107568230 other upstream 1168563 70856811 ~ 70867643 (+)
usp24 usp24 other downstream 319289 72403534 ~ 72497064 (+)
G32641 NA other downstream 511661 72595906 ~ 72596937 (+)
sf3b6 SF3B6,sf3b6,pm14 other downstream 697548 72781793 ~ 72786363 (+)
cd2ap cd2ap other downstream 1060405 73144650 ~ 73196220 (+)
LOC103030552 cnih3,LOC107601529,LOC107732540,LOC106607867,LOC107095392,LOC106527994,LOC108248696,LOC108440801,LOC106571455 other downstream 1354811 73439056 ~ 73506987 (+)

Expression


Co-expression Network