dhcr24 (dhcr24,LOC107581458,LOC107687183,LOC107566150)


Basic Information

Item Value
gene id dhcr24
gene name dhcr24,LOC107581458,LOC107687183,LOC107566150
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 72559357 ~ 72567455 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007260666.3
CTGGGCCACCTCCACAGGTCCGTAAAACTAATACTCATGCGAAATATAATTAAGTCTGACGCATTTAGGGGATACTCGCAGAGACTCAAGGTAATAGAGTTTATCTTTACGGGTTTTATCGTTATAGTTATAGTTGGTGCAGGtcttatatatttctatacagTTTAAGATCTCCACTGAAGTGCATGCTGCTCCTGGACTGGAATGGATCCGCTGCTGTATCTAGCTCTGCTGGTCGTCCTGTTCTTGTTATGGATCAAGGTAAAGGGTCTAGATTATGTCATTATTCACCAGCGATGGATCTTCGTTTGCCTCTTTCTCCTGCCTTTATCCGTCATTTTTGATGTGTACTACTACGTGCGAGCCTGGATCATCTTCAAGATGTGCTCTGCTCCAAAGCTCCACGACCAGAGGGTCAGGGACATTCAGAGACAGGTTCGGGAGTGGAAAAAAGAGGGAGGCAAGAAGCACATGTGCACAGGGCGTCCCGGTTGGCTCACTGTGTCTTTGAGAGTAGGGAAGTACAAGAAGACCCACAAGAACATCATGATCAATATGATGGACATCCTTCAGGTGGACACAAAAAGACAGGTGGTACGTGTGGAGCCCTTGGCAAATATGGGTCAAGTGACTGCTCTACTGAACTCCATTGGCTGGACCCTGCCTGTATTACCTGAACTTGATGATCTCACAGTAGGGGGTCTGGTAATGGGCACAGGTATTGAGTCCTCCTCTCATATTTATGGCCTCTTCCAGCACATCTGTGTGGCCTATGAACTGGTTCTGGCAGATGGCAGCCTTGTCCGCTGCACTGAGAAAGAGAACTCTGACCTATTCTATTCAGTTCCATGGTCCTGTGGAACCCTGGGGTTCCTAGTGGCTGCTGAAATTCGGATCATTCCTGCTCGGAAGTGGGTAAAGCTGCGCTACAAGGCTGTACGTGGTTTGGACAATATCTGTAAGACGTTTTCAGAGGAGTCAGCCAACAAAGAGAACCAGTTTGTGGAGGGTCTGCAGTATTCTCTTGACGAGGCTGTGATAATGACCGGCACCATGACTGACGATGCAGAGCCTGACAAGATCAACCGCATTGGCTACTACTACAAGCCCTGGTTCTTTAAACATGTTGAGCAGTATCTGAAGGATGATCGAGTTGCTGTGGAGTACATCCCACTCAGACATTACTACCACAGGCACACACGCAGCATCTTCTGGGAGTTACAGGACATCATCCCGTTTGGTAATAACCCCTTGTTTAGGTACGTGTTTGGCTGGATGGTGCCTCCTAAGATCTCTTTGCTGAAACTCACCCAGGGAGAGACCATCCGTCGACTGTATGAACAGCACCATGTGGTGCAGGACATGCTGGTACCCATGAAAAACATCAAGATGGCCCTCACACGCTTCCATCAGGACATTCACGTGTATCCCCTCTGGCTCTGCCCGTTTATATTGCCCAGTCAGCCAGGCATGGTACACCCCAAAGGAAATGAGGATGAGCTGTATGTGGATATCGGGGCATATGGAGAGCCCAAAGTCAAACACTTCGAGGCCCAGGCCTCCACGCGCCAGCTCGAGAAGTTTGTGCGAGATGTTCATGGTTTCCAGATGCTTTATGCTGATGTGTATATGGAACGACCAGAATTCTGGGAAATGTTTGATGGCACGCTGTACCATAAGCTCAGGAAGGAGCTGGGCTGTGAAGAGGCCTTTCCTGAAGTCTACGACAAAATCTGCAAAGCGGCGCGCCACTAATTTCAGTCTTAAATTGTGAAAAGTAACCATTGTGagttaaacataaacatttatgtTTATGAGATGAATATTCTGTGGGAAAATGCAATGTTTTTACATcacataatttttaaaaatatatattttttaaaaaacagcctATTGCGTTTGAGCCTTCTTGCATATAGTAAACACAAATTTAGAATATTGAATGTGGTGATTTGGAGTCTAGACCAAGCCTATTGGTTAATAgtaaacaatgttaaaacataaatatattttcctaattttttTCCCTACACTGtgaattttgtaatttttacgTGTGGAGACACTATTTTTAATAGGTTGTATATAAGATATACAAGTTACTGCCtatttcttaatgttttttgcCTTCAGTTAGTTGTTTGTCGTTTATCTGAGACAACTGTAAATcatttttataaagtaaataacTTAATAACCTCTG

Function

symbol description
dhcr24 Predicted to enable delta24(24-1) sterol reductase activity. Predicted to be involved in steroid metabolic process. Predicted to be integral component of membrane. Predicted to be active in cytoplasm and membrane. Is expressed in cranial ganglion; lens; solid lens vesicle; telencephalon; and yolk syncytial layer. Human ortholog(s) of this gene implicated in lipid metabolism disorder. Orthologous to human DHCR24 (24-dehydrocholesterol reductase).

NR:

description
delta(24)-sterol reductase

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0008762 UDP-N-acetylmuramate dehydrogenase activity molecular_function
GO:0050660 flavin adenine dinucleotide binding molecular_function

KEGG:

id description
K09828 DHCR24, DWF1; Delta24-sterol reductase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007260666.3 True 2206 mRNA 0.44 10 72559357 72567455

Neighbor

gene id symbol gene type direction distance location
LOC111191956 NA coding upstream 351221 72206947 ~ 72208136 (+)
plpp3 plpp3,LOC107712879,LOC107716555,LOC107697342,LOC107657212 coding upstream 475112 72036206 ~ 72084245 (+)
LOC107197929 NA coding upstream 561716 71988157 ~ 71997641 (+)
LOC111191308 LOC108415780 coding upstream 858063 71698448 ~ 71701294 (+)
oma1 LOC107581495 coding upstream 1220057 71316242 ~ 71339300 (+)
LOC103033168 si:ch211-121a2.4,LOC103033168,LOC108416079,LOC107581514,LOC108257924,LOC107687197,LOC107712847 coding downstream 36758 72604213 ~ 72610182 (+)
sirt5 sirt5,LOC107687181,LOC107712885,LOC107581456 coding downstream 59785 72627240 ~ 72636248 (+)
LOC111191362 LOC108416099,LOC107559745,LOC107712833,LOC108248366 coding downstream 87364 72654819 ~ 72679083 (+)
LOC103023468 vsnl1a,LOC103023468,LOC103379314,LOC107378186,LOC102798040,LOC104929407,LOC107553484 coding downstream 175563 72743018 ~ 72777057 (+)
tdrd6 NA coding downstream 219541 72786996 ~ 72803789 (+)
G32579 NA non-coding upstream 196016 72362951 ~ 72363341 (+)
G32570 NA non-coding upstream 236351 72322661 ~ 72323006 (+)
G32556 NA non-coding upstream 316546 72242485 ~ 72242811 (+)
G32539 NA non-coding upstream 408566 72150568 ~ 72150791 (+)
G32535 NA non-coding upstream 409881 72149275 ~ 72149476 (+)
G32644 NA non-coding downstream 58941 72626396 ~ 72626685 (+)
G32713 NA non-coding downstream 129994 72697449 ~ 72697765 (+)
G32716 NA non-coding downstream 134067 72701522 ~ 72701806 (+)
G32769 NA non-coding downstream 274396 72841851 ~ 72844396 (+)
LOC111191374 NA non-coding downstream 309589 72877044 ~ 72877730 (+)
usp24 usp24 other upstream 62293 72403534 ~ 72497064 (+)
dab1 dab1,LOC107581465 other upstream 578994 71463100 ~ 71980363 (+)
G32229 NA other upstream 1389801 71167524 ~ 71169556 (+)
G32225 NA other upstream 1418173 71137512 ~ 71141184 (+)
G32198 NA other upstream 1483471 71073848 ~ 71075886 (+)
G32641 NA other downstream 28451 72595906 ~ 72596937 (+)
sf3b6 SF3B6,sf3b6,pm14 other downstream 214338 72781793 ~ 72786363 (+)
cd2ap cd2ap other downstream 577195 73144650 ~ 73196220 (+)
LOC103030552 cnih3,LOC107601529,LOC107732540,LOC106607867,LOC107095392,LOC106527994,LOC108248696,LOC108440801,LOC106571455 other downstream 871601 73439056 ~ 73506987 (+)
selp NA other downstream 1421046 73988501 ~ 74016347 (+)

Expression


Co-expression Network