LOC103034213


Basic Information

Item Value
gene id LOC103034213
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 42516732 ~ 42524073 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007260844.3
TGAAAGTttcattttgcacaaaaaatcCTTCTCGTCATATGTTTCTCGAAGCTCGgtcatgaatgaatgaatgaatgaatgaatgaatgcagaTAAATAATAAAGGCTTACAGTAAAGACTAACATTCCAGGATGGACTTCTGATCATATCTGTAAGACTCCTCCTCAGGCAAGTTTATGCATGCGCCACAGAGCGACAGTCACTCAACAAAGGACACTCAACAGGAGTACAGCTGACTTGTGGCAGAAGCGTGTCAAAATGAATGATTCATACGACGACATTTACAATAACCTAGAGGAGCCGTGTGATGCGCAGGTGAGCCCCACAGTGCAGCACGTTCTCCAGGTCTATGTGTACTCCATCATTTGCATCCTAGGCTTCATTGGCAACACCCTGGTCATCCTGACGTATGCCTTCTACAAGCGGACGAAGTCCATGACGGATGTGTACCTGCTGAACGTGGCTATAGCAGATATCCTGTTTGTGGTGGCGCTGCCTCTGATCATCTTCAGCGAGCAGAACCAGTGGGCTTTGGGAACATGGTCCTGCAAGCTGCTGCGCGGCATCTACAGCATCAACCTGTACAGTGGCATCCTCCTCCTGGCCTGCATTAGCTTGGACCGCTACCTGGCTATCGTTCAGGCCCGCAGGTCCTTCTGGCTGCGCTCCAGAACCCTCGTCTACAGCTACCTGATCTGTGCTGTGGTCTGGCTTAAGGCGTTCTTGTTGTCCTTGCCCACATTCATCTTCTACGAGCATTACGAGGTTGGTGAACTGGGCACTGAATACAGCTATTATAATGATGAAGTGACAGATAATTCTACTACAGATGGAGAGGAAGACAAGTCTCATTATGTGTGCTACTTCCGCTTCACTAACAACGACACCGCCCAGCATATGAAGCGTCTGGTGCCCAGCGCCCAGATGGCAGTGGGCTTCTTCCTGCCGCTGCTGATCATGGGATTCTGCTACTCACAAGTGCTCTTCGTCCTGCTGCGTGCCAGGAACTTCCAGAGGCACAAGGCCGTGCGAGTGGTAATGACTGTGGTTCTGGTCTTCATCGCCTGCCACCTGCCCTATAACATGGTGCTCCTGTACGACACCATCACCATATTCTTCCAGAAGGAATGCAGCGAGGAGAGAACCATAAAGCTGGTTCTGTTCCTCACAGAGAGCCTGGCCTTTCTGCACTGCTGCCTCAACCCCCTGCTGTATGCCTTTGTCGGAGTCAACTTCAGGAACCACTTCTGCAAGATCGTAGAGGACGTCTGGTGCCTGGGGAAGAGGTACATCGGGGCCAGGCGCTCCTCTCGAGCCAATTCTGATGGCTACTACTCCTCCAGGAGGTCCGTGGAAGGAGAAAACGCCACCTCCTTCACCATGTGAACAAAATCGCTCCACAAGTGAAAAATAAACTAGTGACTTGTTGTGAGTTGTTACGACCATCTTGGCTCACAATCAAAGTAGACTGTTTCACATTAAAGGCCACGGCTCACCGTCCCAGTATTTCTCacaaaaattacttttacaaaAGTGAGAATTACTAGAACTCCTTAAACAGCGTGAGTGGGGAAAGAACAGTGCAGATCAGTAAAATAGGGCAAGACAGTGTGAGTGGAAGAAACATAAATGAGAAACAGTGAATGATAATGTGAACTTTCGACACAAAAAGAAATAGGGCAcagcttcaaaaaaaaaaaaaaaaagaagaattttggATAACTTA

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0006935 chemotaxis biological_process
GO:0006955 immune response biological_process
GO:0016021 integral component of membrane cellular_component
GO:0016493 C-C chemokine receptor activity molecular_function

KEGG:

id description
K04181 CCR6, CD196; C-C chemokine receptor type 6

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007260844.3 True 1727 mRNA 0.48 2 42516732 42524073

Neighbor

gene id symbol gene type direction distance location
LOC103042546 LOC108411077 coding upstream 20414 42403920 ~ 42496318 (+)
rnaseh1 LOC107693208 coding upstream 190328 42317523 ~ 42326404 (+)
kidins220 LOC103040274,LOC108410983,LOC108258057 coding upstream 783186 41708770 ~ 41733546 (+)
LOC103039741 mboat2b,LOC103039741,LOC108410960,LOC108257786,LOC107668249,LOC107601827,LOC107693237,LOC107756580,LOC106607658 coding upstream 811342 41634955 ~ 41705390 (+)
LOC103038512 asap2,LOC108410950,LOC108257785,LOC105894440 coding upstream 895460 41588752 ~ 41621272 (+)
acbd3 acbd3,LOC107549117,LOC107732644,LOC107726445,LOC107601671,LOC107668205 coding downstream 15269 42539342 ~ 42551073 (+)
LOC103035072 NA coding downstream 31808 42555881 ~ 42716312 (+)
sod2 sod2,LOC107732630 coding downstream 238341 42762414 ~ 42766097 (+)
LOC103039464 NA coding downstream 389967 42914040 ~ 42916599 (+)
otof otof coding downstream 398520 42922593 ~ 43034392 (+)
G25624 NA non-coding upstream 11435 42503781 ~ 42505297 (+)
G25602 NA non-coding upstream 119434 42397002 ~ 42397298 (+)
G25577 NA non-coding upstream 194472 42320911 ~ 42322260 (+)
G25560 NA non-coding upstream 320079 42196383 ~ 42196653 (+)
LOC111196607 NA non-coding upstream 401211 42061924 ~ 42115521 (+)
G25650 NA non-coding downstream 81828 42605901 ~ 42606128 (+)
G25647 NA non-coding downstream 193585 42717658 ~ 42718389 (+)
G25657 NA non-coding downstream 203561 42727634 ~ 42729509 (+)
G25662 wtap,LOC107696108,LOC107601562,LOC107726473,LOC107549122 non-coding downstream 229285 42753358 ~ 42759971 (+)
G25828 hsp90aa1.1,LOC108411456,LOC101068853,LOC103369947,LOC108231826,LOC105919227,LOC102218115,LOC103457915,LOC103024454,LOC108257813,LOC108411468,LOC107704347,LOC107557012 non-coding downstream 805454 43329527 ~ 43341729 (+)
fgfr1op NA other upstream 90 42497722 ~ 42516642 (+)
G25601 NA other upstream 123794 42391640 ~ 42392938 (+)
G24972 NA other upstream 2691014 39819276 ~ 39825718 (+)
eif2b2 eif2b2,LOC107697194,LOC107685362 other upstream 3118854 39388867 ~ 39397878 (+)
LOC111196173 NA other upstream 3175761 39325083 ~ 39340971 (+)
LOC103026014 LOC103026014,LOC108411425 other downstream 735547 43259620 ~ 43262099 (+)
rps29 NA other downstream 836396 43360469 ~ 43363444 (+)
G25879 NA other downstream 897698 43421771 ~ 43422046 (+)
G25880 NA other downstream 900319 43424392 ~ 43424906 (+)
LOC103033920 LOC108416105 other downstream 966250 43490323 ~ 43494316 (+)

Expression


Co-expression Network