acbd3 (acbd3,LOC107549117,LOC107732644,LOC107726445,LOC107601671,LOC107668205)


Basic Information

Item Value
gene id acbd3
gene name acbd3,LOC107549117,LOC107732644,LOC107726445,LOC107601671,LOC107668205
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 42539342 ~ 42551073 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007260845.3
CCGCCGACTCCGGGCAGAAGAAGCAGGATTCCGGCTGCTGAGTGTGGTAACGGAAGTAGGTACGTGGCTGCTGCTCCCGCTGCCGTGTCTGCAGGATGGCGACTGAGGTTCAGAGCGGCGACCTCACCAGCGCGAACTCCAGCCGCCTCGAGGTTTCCATCGACGGCCTGACGCTGAGCCCGGACTCGGAGGCGGAGCAGGAGACGCTGGaggaggcggccggggccgcggcgGACGGCGGGTCGGACGGCGAGGCCGCGGCGGCGggggaagaagaggaggaggaggagcgggGCGAGAACGGCCACAGCTCGGTGGAGAGCGTCTGGGGCTTCCCGCTGGTCGAGCTGTACGGCCTGGCGCTCAGGTTTTTCAAAGAAAAAGATGGCAAAGCTTTCCACCCAACATATGAAGAGAAGCTGCGACTGGTGGCCCTCCACAAGCAGGTTCTGCAAGGCCCCTACAACCCAGATGCCTCCCCTGAGGTGGGCTTCTTTGATGTGTTGGGAAATGACCGCAGGAAAGAATGGGCTTCGTTGGGAAGTATGGAGAAGGATGAGGCCATGGTAGAGTTTGTaaagctgttaaataaatgctgtaCTTTATTTGCACCATTCGTTGCATCACACAAGATTGAAAAGGAGGAGCAAGAAAGGAAGAGGAGGGAGGAAGAGGAAATACGACGTCAAGAAGAAGAGGAGCGGGAGTGGCAGCGTCAGGAAGAGGAAAGGCGCAggcgggaggaggaggagagactgaagagagaagaagaggaaaggAGGCAGATTGAGGAGGAAAGGCTGCGTGTGGAGCAGCAAAAGCAGCAGATCATGGCTGCTCTTAATGCACAGACAGCTGTGCAGTTCCAGCAGTATGCGGCACAGCAGTACCCGGACAGTCCTGAGCAGCAGCTGGTTCTCATCAGGCAGCTTCAGGAGCAGCACTACCAGCAGTACATGCAGCAACTCTACCAGGTGCAGCTGGCGCAGCAGCAGGCAGCCCTCCAGAAGCAGCAGGAGGATTCTATAGTTCTTTCCACACTAGAGGCCAGTGAAGCATCGGCACCCTCTTGTGGTGAGGAGGCCCCTACAGTGAATGGTCAGGCAGAGTCCTCCACCGACAGCATAGAGAGAGAGCCTGATCTGGAGCCTGCAGAGGAGATCACTGAGAACGGCCCTACAGACTCGCCCCCTGTGATAGCAGCACCTTCTATGTGGACCCGGCCACAGATAAAAGACTTTAAGGAAAAGATTCGCCAGGATGTTGACTCTGTGATCACGGTGGGCAGAGGAGAGGTAGTCACTGTGAGAGTCCCCACCCATGAAGAGGGCTCTTATCTCTTCTGGGAGTTTGCTACTGACTACTACGACATTGGCTTTGGTGTCTTCTTTGAATGGACAGATTCAACCAATGCCTCTGTTAGTGTGCACGTCAGCGAGTCTAGTGAcgaagatgaagatgaggaagCAGAGCCTCAGAGTGAAGAAGAGAAGGCGAAAAAGGAGGCAGGAAAGCCGCAGGTAGATGAGATTGTGCCGGTGTACCGGCGGGACTGTCATGAAGAAGTTTATGCTGGAAGTCACCAGTATCCTGGCCGTGGCATCTACCTGCTTAAGTTCGACAACTCTTACTCACTCTGGCGGTCCAAGAGTGTCTATTACAGAGTCTACTACACCAGATAAGCCTGGAGTCAAGACTGTGGAGCAaacgtgtgtctgtgtgagagagtgtttaTGTGCGCATGTGTGGTTGAGGTGCGTCTCATGCTTTTCGACTTAAGGAGGTTTGGGCTCTGATGTAAACTTGCCACCTCTGTTTTTCACTCTAAAAGGCGTGCTCTAGGACTTTGTGCTTGTTGATAGTATTGTCTTCTGCACCCAGTGTGACTTATCCTCAGCCTCCATTCATCTTCTAATGTCATCCAAAAAGGTTCTTTGGCCACTTACAAGGACTTCTAGAGCTGTGTGTCCTTTAAGAAAGTGGGTGTGTTTCCTTGTCTTGCTTGGACACAGAACATAGTACTGCTTTTCCACCACTACCTGAAacctctttttatttctactgaCCTTTTCATTCAGCAATTGAGAATGCATTTCCATACACTGCTCTGTctgatgtaaaacatttttaaacaaggtGAATTGATCTCAGTGCTCATTTCTGCTTCTGTATTAGTGAGTATTAATTGCAGTTCATGTGTCACATTAGTAAAaagtgttggggggggggggagctgTGAAGATCTGCAGTAACATATTACTGAATTGCCCATTAATGCTTAATTGACGTGTTTTGAACAATTTACAGCAATGGTGCAAAAAAGCCAAAACATAATGAAATTTGGTAAGGCAGCTAATCCATAAGAACTTTATCATTCCcttaattattgtgtttttgtttgttgtcaTTTGGCTGCTTTCCTCTAACTGAAATTAGATATTGGGTTCTGATTCTTCCACACTGAGCAATATTTCACGCATCCGTTGTAATTGTGAACGTGGTTGAGGATTCAGGTGGTGGCGGAAAAGCAATATGACATGCCTTGCTCCTGGAGGACTTCCTTATTTAGGTCACTGCTGAGAATATCAACCAATGGTATATAAGCGCTTCACCAGTCAGCGTACAGTGCAGACATAAAGCAGCACGTTCTACATGGAGGCCGTTGGGAGggaaagaaaaatgaataaGACATGAATTTTCTACTGACGGAAGGATGAGAATGATGTATATCTAAGATTAAACTGGTGGAGGCCTTgaagagagattttttttgttttgcagcaGCCTTTGATAAAGTGGTTggattgtgtgtaaaacgtttattaaatatttattaacccCCCTGGTAGAGTAGGGTCCTTGATGTCTCTGTATGTCATCTTACATGTAACTCATTTCCCAACAGTTCATATTTCtgctttttaaatggttttgtctttctcatctcttctttttttttcattttgttttgagTTGGAGACTGGGCAGTATTGACTTTGTATGGTGGCATAACTAGCAGTTCGAACTCATCTTCTTGccttttttcattgtttctttttagttttcctttttttttttttacagtcagtcACTGTTACATTTTATGTGTGTAGTTCTAGACAAGCCACATGAAAACAGAACTtgtatatcattgctgtcatgcaaaaaaacttgtatctccATCCATGTTTGCAGTTTTTAGCATTTATAAATAATGTGAATTTGGTTGATGTTCTTAAATTTTATCAACATTTCATGATATATGAACCAATAGAAAGTgattggaataaaatatttttattgacatGCCATTGaaaattgtttttgcttttcctgtaaagttgttgttttggagatacaaggtttttgtgtgaGAGTGgcaatatatgtgtgtgtatatatataaatgtgtgtactCAGTTGAGAATTTTATAATTTCACACttctatttctcatttattatcTCTATTTGAAACTAAGAGTTTCTgttctttaatttactttataatactgtggctGCCCAATAGAATCAGATGAATAATCAAATGCAAAATTGAAATCTGTGAGTGCTTTGACTGTTCCCTTTTATTTATTGCTGTTTTGCAGTTCTGAAGACCAGTACAGTGAGCACTGCTGCTCACCAGTTCAAGGGTTATGTGCTCTCTTTGTTTGTGATGTTTGTTGGATTTTTCACAGCTTTAAACGAATGCTTCTTCATCCCAACTCCTCACTCAACATCTACACTCTAAACCATCTCTCCTCACTGGAGGTTTCATAGCTTTTCTGTATTAAGGTTGATTGAAacattaattttgtgtgtgtgtgtttgtgtgtatgccTGTGTAAAACAGGGCAGTTGGTTCAGCTAGACCACATGAGACCGTTTCCAGAAATACATTATTGTACAGATTTACATATGTGATATATGGGTGTGTATGTGCATATAGTGGTGCGCACAAAACACCACAAAGACGTGAATACACAAGCCTGACATCAAAAGTGGCCCAAAGAAATGATGCATCTACGTAATTTAATCTTAATTAACATTGGTAATCTCCCTGTTGTTGTTTTCTCTAACCTTTTCCAATGTTAATGAATTTAATTCAGGCCTTTGTAAAGTTGTGTGTAAAAGTGGGCTTGATGATGGACAGGGGGCATGGGGTATAAAAAGATGGAAGTGTGGTAAACTGTATCTTAACAAGGTGGACGTCGTGTAAATCCAATAACATGAGAACATGAAgaaacaacacttttttttgtattgatttGACCTGTATGATCTGTATGAGTTTGAGGATGAGTCTCCTTGAGCATATATTTAATCTTGATTAAACTTATGTTcatctgta
>XM_007260846.3
TTGGCTCTAGTCGTGACAGTGCCCCGTGTGCTGTGGTGCGCAGTACTCGTGCGCCGGTGGGGGGCGCTGTTCGCGGCCGCGCTCAGTCCGCCGACTCCGGGCAGAAGAAGCAGGATTCCGGCTGCTGAGTGTGGTAACGGAAGTAGGTACGTGGCTGCTGCTCCCGCTGCCGTGTCTGCAGGATGGCGACTGAGGTTCAGAGCGGCGACCTCACCAGCGCGAACTCCAGCCGCCTCGAGGTTTCCATCGACGGCCTGACGCTGAGCCCGGACTCGGAGGCGGAGCAGGAGACGCTGGaggaggcggccggggccgcggcgGACGGCGGGTCGGACGGCGAGGCCGCGGCGGCGggggaagaagaggaggaggaggagcgggGCGAGAACGGCCACAGCTCGGTGGAGAGCGTCTGGGGCTTCCCGCTGGTCGAGCTGTACGGCCTGGCGCTCAGGTTTTTCAAAGAAAAAGATGGCAAAGCTTTCCACCCAACATATGAAGAGAAGCTGCGACTGGTGGCCCTCCACAAGCAGGTTCTGCAAGGCCCCTACAACCCAGATGCCTCCCCTGAGGTGGGCTTCTTTGATGTGTTGGGAAATGACCGCAGGAAAGAATGGGCTTCGTTGGGAAGTATGGAGAAGGATGAGGCCATGGTAGAGTTTGTaaagctgttaaataaatgctgtaCTTTATTTGCACCATTCGTTGCATCACACAAGATTGAAAAGGAGGAGCAAGAAAGGAAGAGGAGGGAGGAAGAGGAAATACGACGTCAAGAAGAAGAGGAGCGGGAGTGGCAGCGTCAGGAAGAGGAAAGGCGCAggcgggaggaggaggagagactgaagagagaagaagaggaaaggAGGCAGATTGAGGAGGAAAGGCTGCGTGTGGAGCAGCAAAAGCAGCAGATCATGGCTGCTCTTAATGCACAGACAGCTGTGCAGTTCCAGCAGTATGCGGCACAGCAGTACCCGGACAGTCCTGAGCAGCAGCTGGTTCTCATCAGGCAGCTTCAGGAGCAGCACTACCAGCAGTACATGCAGCAACTCTACCAGGTGCAGCTGGCGCAGCAGCAGGCAGCCCTCCAGAAGCAGCAGGAGGATTCTATAGTTCTTTCCACACTAGAGGCCAGTGAAGCATCGGCACCCTCTTGTGGTGAGGAGGCCCCTACAGTGAATGGTCAGGCAGAGTCCTCCACCGACAGCATAGAGAGAGAGCCTGATCTGGAGCCTGCAGAGGAGATCACTGAGAACGGCCCTACAGACTCGCCCCCTGTGATAGCAGCACCTTCTATGTGGACCCGGCCACAGATAAAAGACTTTAAGGAAAAGATTCGCCAGGATGTTGACTCTGTGATCACGGTGGGCAGAGGAGAGGTAGTCACTGTGAGAGTCCCCACCCATGAAGAGGGCTCTTATCTCTTCTGGGAGTTTGCTACTGACTACTACGACATTGGCTTTGGTGTCTTCTTTGAATGGACAGATTCAACCAATGCCTCTGTTAGTGTGCACGTCAGCGAGTCTAGTGAcgaagatgaagatgaggaagAGCCTCAGAGTGAAGAAGAGAAGGCGAAAAAGGAGGCAGGAAAGCCGCAGGTAGATGAGATTGTGCCGGTGTACCGGCGGGACTGTCATGAAGAAGTTTATGCTGGAAGTCACCAGTATCCTGGCCGTGGCATCTACCTGCTTAAGTTCGACAACTCTTACTCACTCTGGCGGTCCAAGAGTGTCTATTACAGAGTCTACTACACCAGATAAGCCTGGAGTCAAGACTGTGGAGCAaacgtgtgtctgtgtgagagagtgtttaTGTGCGCATGTGTGGTTGAGGTGCGTCTCATGCTTTTCGACTTAAGGAGGTTTGGGCTCTGATGTAAACTTGCCACCTCTGTTTTTCACTCTAAAAGGCGTGCTCTAGGACTTTGTGCTTGTTGATAGTATTGTCTTCTGCACCCAGTGTGACTTATCCTCAGCCTCCATTCATCTTCTAATGTCATCCAAAAAGGTTCTTTGGCCACTTACAAGGACTTCTAGAGCTGTGTGTCCTTTAAGAAAGTGGGTGTGTTTCCTTGTCTTGCTTGGACACAGAACATAGTACTGCTTTTCCACCACTACCTGAAacctctttttatttctactgaCCTTTTCATTCAGCAATTGAGAATGCATTTCCATACACTGCTCTGTctgatgtaaaacatttttaaacaaggtGAATTGATCTCAGTGCTCATTTCTGCTTCTGTATTAGTGAGTATTAATTGCAGTTCATGTGTCACATTAGTAAAaagtgttggggggggggggagctgTGAAGATCTGCAGTAACATATTACTGAATTGCCCATTAATGCTTAATTGACGTGTTTTGAACAATTTACAGCAATGGTGCAAAAAAGCCAAAACATAATGAAATTTGGTAAGGCAGCTAATCCATAAGAACTTTATCATTCCcttaattattgtgtttttgtttgttgtcaTTTGGCTGCTTTCCTCTAACTGAAATTAGATATTGGGTTCTGATTCTTCCACACTGAGCAATATTTCACGCATCCGTTGTAATTGTGAACGTGGTTGAGGATTCAGGTGGTGGCGGAAAAGCAATATGACATGCCTTGCTCCTGGAGGACTTCCTTATTTAGGTCACTGCTGAGAATATCAACCAATGGTATATAAGCGCTTCACCAGTCAGCGTACAGTGCAGACATAAAGCAGCACGTTCTACATGGAGGCCGTTGGGAGggaaagaaaaatgaataaGACATGAATTTTCTACTGACGGAAGGATGAGAATGATGTATATCTAAGATTAAACTGGTGGAGGCCTTgaagagagattttttttgttttgcagcaGCCTTTGATAAAGTGGTTggattgtgtgtaaaacgtttattaaatatttattaacccCCCTGGTAGAGTAGGGTCCTTGATGTCTCTGTATGTCATCTTACATGTAACTCATTTCCCAACAGTTCATATTTCtgctttttaaatggttttgtctttctcatctcttctttttttttcattttgttttgagTTGGAGACTGGGCAGTATTGACTTTGTATGGTGGCATAACTAGCAGTTCGAACTCATCTTCTTGccttttttcattgtttctttttagttttcctttttttttttttacagtcagtcACTGTTACATTTTATGTGTGTAGTTCTAGACAAGCCACATGAAAACAGAACTtgtatatcattgctgtcatgcaaaaaaacttgtatctccATCCATGTTTGCAGTTTTTAGCATTTATAAATAATGTGAATTTGGTTGATGTTCTTAAATTTTATCAACATTTCATGATATATGAACCAATAGAAAGTgattggaataaaatatttttattgacatGCCATTGaaaattgtttttgcttttcctgtaaagttgttgttttggagatacaaggtttttgtgtgaGAGTGgcaatatatgtgtgtgtatatatataaatgtgtgtactCAGTTGAGAATTTTATAATTTCACACttctatttctcatttattatcTCTATTTGAAACTAAGAGTTTCTgttctttaatttactttataatactgtggctGCCCAATAGAATCAGATGAATAATCAAATGCAAAATTGAAATCTGTGAGTGCTTTGACTGTTCCCTTTTATTTATTGCTGTTTTGCAGTTCTGAAGACCAGTACAGTGAGCACTGCTGCTCACCAGTTCAAGGGTTATGTGCTCTCTTTGTTTGTGATGTTTGTTGGATTTTTCACAGCTTTAAACGAATGCTTCTTCATCCCAACTCCTCACTCAACATCTACACTCTAAACCATCTCTCCTCACTGGAGGTTTCATAGCTTTTCTGTATTAAGGTTGATTGAAacattaattttgtgtgtgtgtgtttgtgtgtatgccTGTGTAAAACAGGGCAGTTGGTTCAGCTAGACCACATGAGACCGTTTCCAGAAATACATTATTGTACAGATTTACATATGTGATATATGGGTGTGTATGTGCATATAGTGGTGCGCACAAAACACCACAAAGACGTGAATACACAAGCCTGACATCAAAAGTGGCCCAAAGAAATGATGCATCTACGTAATTTAATCTTAATTAACATTGGTAATCTCCCTGTTGTTGTTTTCTCTAACCTTTTCCAATGTTAATGAATTTAATTCAGGCCTTTGTAAAGTTGTGTGTAAAAGTGGGCTTGATGATGGACAGGGGGCATGGGGTATAAAAAGATGGAAGTGTGGTAAACTGTATCTTAACAAGGTGGACGTCGTGTAAATCCAATAACATGAGAACATGAAgaaacaacacttttttttgtattgatttGACCTGTATGATCTGTATGAGTTTGAGGATGAGTCTCCTTGAGCATATATTTAATCTTGATTAAACTTATGTTcatctgta

Function

symbol description
acbd3 Predicted to enable fatty-acyl-CoA binding activity. Predicted to be active in Golgi membrane. Orthologous to human ACBD3 (acyl-CoA binding domain containing 3).

NR:

description
Golgi resident protein GCP60-like isoform X4

GO: NA

KEGG:

id description
K23935 ACBD3; golgi resident protein GCP60

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007260845.3 False 4349 mRNA 0.44 8 42539429 42551073
XM_007260846.3 True 4433 mRNA 0.45 8 42539342 42551073

Neighbor

gene id symbol gene type direction distance location
LOC103034213 NA coding upstream 15269 42516732 ~ 42524073 (+)
LOC103042546 LOC108411077 coding upstream 43024 42403920 ~ 42496318 (+)
rnaseh1 LOC107693208 coding upstream 212938 42317523 ~ 42326404 (+)
kidins220 LOC103040274,LOC108410983,LOC108258057 coding upstream 805796 41708770 ~ 41733546 (+)
LOC103039741 mboat2b,LOC103039741,LOC108410960,LOC108257786,LOC107668249,LOC107601827,LOC107693237,LOC107756580,LOC106607658 coding upstream 833952 41634955 ~ 41705390 (+)
LOC103035072 NA coding downstream 4808 42555881 ~ 42716312 (+)
sod2 sod2,LOC107732630 coding downstream 211341 42762414 ~ 42766097 (+)
LOC103039464 NA coding downstream 362967 42914040 ~ 42916599 (+)
otof otof coding downstream 371520 42922593 ~ 43034392 (+)
LOC103041928 pdia6,LOC108411347,LOC107732640,LOC107693218,LOC107549125 coding downstream 493119 43044192 ~ 43051887 (+)
G25625 NA non-coding upstream 19400 42519641 ~ 42519942 (+)
G25624 NA non-coding upstream 34045 42503781 ~ 42505297 (+)
G25602 NA non-coding upstream 142044 42397002 ~ 42397298 (+)
G25577 NA non-coding upstream 217082 42320911 ~ 42322260 (+)
G25560 NA non-coding upstream 342689 42196383 ~ 42196653 (+)
G25650 NA non-coding downstream 54828 42605901 ~ 42606128 (+)
G25647 NA non-coding downstream 166585 42717658 ~ 42718389 (+)
G25657 NA non-coding downstream 176561 42727634 ~ 42729509 (+)
G25662 wtap,LOC107696108,LOC107601562,LOC107726473,LOC107549122 non-coding downstream 202285 42753358 ~ 42759971 (+)
G25828 hsp90aa1.1,LOC108411456,LOC101068853,LOC103369947,LOC108231826,LOC105919227,LOC102218115,LOC103457915,LOC103024454,LOC108257813,LOC108411468,LOC107704347,LOC107557012 non-coding downstream 778454 43329527 ~ 43341729 (+)
fgfr1op NA other upstream 22700 42497722 ~ 42516642 (+)
G25601 NA other upstream 146404 42391640 ~ 42392938 (+)
G24972 NA other upstream 2713624 39819276 ~ 39825718 (+)
eif2b2 eif2b2,LOC107697194,LOC107685362 other upstream 3141464 39388867 ~ 39397878 (+)
LOC111196173 NA other upstream 3198371 39325083 ~ 39340971 (+)
LOC103026014 LOC103026014,LOC108411425 other downstream 708547 43259620 ~ 43262099 (+)
rps29 NA other downstream 809396 43360469 ~ 43363444 (+)
G25879 NA other downstream 870698 43421771 ~ 43422046 (+)
G25880 NA other downstream 873319 43424392 ~ 43424906 (+)
LOC103033920 LOC108416105 other downstream 939250 43490323 ~ 43494316 (+)

Expression


Co-expression Network