LOC103036422 (LOC103036422,LOC108411258)


Basic Information

Item Value
gene id LOC103036422
gene name LOC103036422,LOC108411258
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 42719549 ~ 42727065 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007260854.3
ACAGTAGAGGAGTCGTTAGGGGAGTGGGGCGCTtagtcacagagagagagaacagagcgGACAGGAGGGGTTTTACCCGAATCTCCAGCACTTCTGCTTCAGAAACAGCTTGTGGATTTTCCTGACAGTTCGTTGTTGGAGGTTAATCACAAAATCTAGGAAGATGCTGAAATCTCTGGGTAAAATGTTTACAACAGGATTGGACAATCCGAAGTTTACTCTTCAAGAAAGCAAGGGCCAGGACTATGAGGTCCGCACCTACCAGCAAACAAACTGGGTCAGTACCACAGTGACTGAAATGGATCAGGACTCTGCCTTAAACACAGGCTTTAACCGACTCTTCAAATACATCCAGGGAAACAATGAAAAGAAGGTTAAGGTGGAGATGACTGCACCAGTCACCTGCATGATAAACCCTGGAGAAGGTCCAGCCTGTGAGAGCTCATTCTCTGTGTCCTTCTACGTTCCTGAAGAGCACCAGGCTGACCCACCCAAACCCAGCGCCCCGGAAATCTTTGTAGAGAACAGGAAGGAGTTCACTGTGTTTGTGAGAACCTATGGAGGTTTTGCCAACACACAGAACACCAATGAAGAGCTGCAGAAACTGATAGAGAGCCTGAAGAGGGATGGAATGGCCTTTAAAGAGGCTCCATATTACAGAGTGGGCTACGACAGTCCCTTCAAGCTGGTCAACCGCAGGAACGAAGTCTGGCTCATCAAACCAGAGGAAGGAAAGTAATGAGCACAAGTATGTTTACACTGTTTAAGGAAAAGAGGTCTGGATCATTAAAATCCTATAGTTTTTGGGAATTCTGTCTTTGCATTCACAAATGCCTGGAACATTTTTTAGGATTTTATAATACTCATTAATTTTAAGAGTTGAAAGGGTacaaatatctttaaatataaGAACGCTActaagtgtaaaaaaacacaaatgcttTTTGTTGTAACAAAAACGATGTGACTTTAACAGATTAGTATTATGATTGTAACATTTCTATTgatgttattaaaaatataaagagaaaaatTTGTTACAACATATTACATTAGATCAGACAGATAACTGACACAGCATAGAAGCTGTAACCAATCTTATGTAACATGATATAACACATGTCTCTGTTTGTTATTGGCATAGAAAGGGGactttaaaatgtgattttaattgCATCACTGAATTGATAAATATTGCCTTGCATGGTCAGTTCTCTTGTGCTGCTGTTACTTTAAATCTTTAAttgtaattagttttttttattgcacttGCCTGTAATGAATAAATTGACCAGCCTAATGTGAACACTAACACATTCCTATTAA
>XM_007260855.3
ACAGTAGAGGAGTCGTTAGGGGAGTGGGGCGCTtagtcacagagagagagaacagagcgGACAGGAGGGGTTTTACCCGAATCTCCAGCACTTCTGCTTCAGAAACAGTTCGTTGTTGGAGGTTAATCACAAAATCTAGGAAGATGCTGAAATCTCTGGGTAAAATGTTTACAACAGGATTGGACAATCCGAAGTTTACTCTTCAAGAAAGCAAGGGCCAGGACTATGAGGTCCGCACCTACCAGCAAACAAACTGGGTCAGTACCACAGTGACTGAAATGGATCAGGACTCTGCCTTAAACACAGGCTTTAACCGACTCTTCAAATACATCCAGGGAAACAATGAAAAGAAGGTTAAGGTGGAGATGACTGCACCAGTCACCTGCATGATAAACCCTGGAGAAGGTCCAGCCTGTGAGAGCTCATTCTCTGTGTCCTTCTACGTTCCTGAAGAGCACCAGGCTGACCCACCCAAACCCAGCGCCCCGGAAATCTTTGTAGAGAACAGGAAGGAGTTCACTGTGTTTGTGAGAACCTATGGAGGTTTTGCCAACACACAGAACACCAATGAAGAGCTGCAGAAACTGATAGAGAGCCTGAAGAGGGATGGAATGGCCTTTAAAGAGGCTCCATATTACAGAGTGGGCTACGACAGTCCCTTCAAGCTGGTCAACCGCAGGAACGAAGTCTGGCTCATCAAACCAGAGGAAGGAAAGTAATGAGCACAAGTATGTTTACACTGTTTAAGGAAAAGAGGTCTGGATCATTAAAATCCTATAGTTTTTGGGAATTCTGTCTTTGCATTCACAAATGCCTGGAACATTTTTTAGGATTTTATAATACTCATTAATTTTAAGAGTTGAAAGGGTacaaatatctttaaatataaGAACGCTActaagtgtaaaaaaacacaaatgcttTTTGTTGTAACAAAAACGATGTGACTTTAACAGATTAGTATTATGATTGTAACATTTCTATTgatgttattaaaaatataaagagaaaaatTTGTTACAACATATTACATTAGATCAGACAGATAACTGACACAGCATAGAAGCTGTAACCAATCTTATGTAACATGATATAACACATGTCTCTGTTTGTTATTGGCATAGAAAGGGGactttaaaatgtgattttaattgCATCACTGAATTGATAAATATTGCCTTGCATGGTCAGTTCTCTTGTGCTGCTGTTACTTTAAATCTTTAAttgtaattagttttttttattgcacttGCCTGTAATGAATAAATTGACCAGCCTAATGTGAACACTAACACATTCCTATTAA
>XM_022686141.1
agGAATATTTCTGTCATGCACTCTATCTCTGGTTCTTTTCGTTGTTGGAGGTTAATCACAAAATCTAGGAAGATGCTGAAATCTCTGGGTAAAATGTTTACAACAGGATTGGACAATCCGAAGTTTACTCTTCAAGAAAGCAAGGGCCAGGACTATGAGGTCCGCACCTACCAGCAAACAAACTGGGTCAGTACCACAGTGACTGAAATGGATCAGGACTCTGCCTTAAACACAGGCTTTAACCGACTCTTCAAATACATCCAGGGAAACAATGAAAAGAAGGTTAAGGTGGAGATGACTGCACCAGTCACCTGCATGATAAACCCTGGAGAAGGTCCAGCCTGTGAGAGCTCATTCTCTGTGTCCTTCTACGTTCCTGAAGAGCACCAGGCTGACCCACCCAAACCCAGCGCCCCGGAAATCTTTGTAGAGAACAGGAAGGAGTTCACTGTGTTTGTGAGAACCTATGGAGGTTTTGCCAACACACAGAACACCAATGAAGAGCTGCAGAAACTGATAGAGAGCCTGAAGAGGGATGGAATGGCCTTTAAAGAGGCTCCATATTACAGAGTGGGCTACGACAGTCCCTTCAAGCTGGTCAACCGCAGGAACGAAGTCTGGCTCATCAAACCAGAGGAAGGAAAGTAATGAGCACAAGTATGTTTACACTGTTTAAGGAAAAGAGGTCTGGATCATTAAAATCCTATAGTTTTTGGGAATTCTGTCTTTGCATTCACAAATGCCTGGAACATTTTTTAGGATTTTATAATACTCATTAATTTTAAGAGTTGAAAGGGTacaaatatctttaaatataaGAACGCTActaagtgtaaaaaaacacaaatgcttTTTGTTGTAACAAAAACGATGTGACTTTAACAGATTAGTATTATGATTGTAACATTTCTATTgatgttattaaaaatataaagagaaaaatTTGTTACAACATATTACATTAGATCAGACAGATAACTGACACAGCATAGAAGCTGTAACCAATCTTATGTAACATGATATAACACATGTCTCTGTTTGTTATTGGCATAGAAAGGGGactttaaaatgtgattttaattgCATCACTGAATTGATAAATATTGCCTTGCATGGTCAGTTCTCTTGTGCTGCTGTTACTTTAAATCTTTAAttgtaattagttttttttattgcacttGCCTGTAATGAATAAATTGACCAGCCTAATGTGAACACTAACACATTCCTATTAA

Function

NR:

description
heme-binding protein 2-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007260854.3 True 1326 mRNA 0.40 5 42719549 42727065
XM_007260855.3 False 1306 mRNA 0.40 5 42719549 42727065
XM_022686141.1 False 1235 mRNA 0.38 5 42719549 42724151

Neighbor

gene id symbol gene type direction distance location
rps7 rps7,LOC107668222,LOC107601753,LOC107726469 coding downstream 402807 42310350 ~ 42316742 (-)
allc allc coding downstream 411559 42299869 ~ 42307990 (-)
sox11 sox11b,LOC108411020,LOC107756575,LOC107668258,LOC107601767,LOC108258189 coding downstream 658098 42058830 ~ 42061451 (-)
LOC103030723 rnf144ab,LOC108411012,LOC107549108,LOC107693234,LOC107601775,LOC107668259,LOC107721372 coding downstream 807773 41885575 ~ 41911776 (-)
LOC103041202 NA coding downstream 981526 41734581 ~ 41738023 (-)
kif25 kif25,LOC107602573,LOC105010024 coding upstream 1361 42728426 ~ 42744729 (-)
acat2 acat2,LOC107732634,LOC107549121,LOC107693222,LOC107696107 coding upstream 19409 42746474 ~ 42751642 (-)
wtap wtap,LOC107696108,LOC107601562,LOC107726473,LOC107549122 coding upstream 24944 42752009 ~ 42759990 (-)
fndc1 fndc1,LOC107549078 coding upstream 99003 42826068 ~ 42891072 (-)
c3h2orf70 NA coding upstream 168708 42895773 ~ 42898483 (-)
G25642 acbd3,LOC107601671,LOC107726445,LOC107668205 non-coding downstream 174832 42542636 ~ 42544717 (-)
G25628 NA non-coding downstream 202801 42511497 ~ 42516748 (-)
G25607 NA non-coding downstream 322513 42396810 ~ 42397036 (-)
G25579 NA non-coding downstream 393197 42324834 ~ 42326352 (-)
G25578 NA non-coding downstream 394817 42317545 ~ 42324732 (-)
G25691 NA non-coding upstream 74690 42801755 ~ 42804141 (-)
G25697 NA non-coding upstream 96420 42823485 ~ 42824112 (-)
G25718 NA non-coding upstream 188996 42916061 ~ 42916736 (-)
G25739 NA non-coding upstream 304613 43031678 ~ 43033442 (-)
G25769 pdia6 non-coding upstream 319037 43046102 ~ 43047586 (-)
G25678 NA other downstream 1160 42717666 ~ 42718389 (-)
LOC111196586 LOC108262118 other downstream 839125 41869024 ~ 41880424 (-)
LOC111196508 NA other downstream 853705 41856095 ~ 41865844 (-)
arhgap11a NA other downstream 1277055 41436041 ~ 41442494 (-)
G25265 slco5a1 other downstream 1500720 41214421 ~ 41218829 (-)
G25785 NA other upstream 371757 43098822 ~ 43111401 (-)
LOC103027084 LOC108416115,LOC103358919 other upstream 768354 43495419 ~ 43517157 (-)
G25967 mcm3l,LOC108416133,LOC108258154,LOC107697457 other upstream 947960 43675025 ~ 43678862 (-)
cbr4 cbr4,LOC107597475,LOC107665353 other upstream 1163564 43890629 ~ 43899760 (-)
fkbp1b fkbp1b other upstream 2042199 44769264 ~ 44799505 (-)

Expression


Co-expression Network