acat2 (acat2,LOC107732634,LOC107549121,LOC107693222,LOC107696107)


Basic Information

Item Value
gene id acat2
gene name acat2,LOC107732634,LOC107549121,LOC107693222,LOC107696107
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 42746474 ~ 42751642 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007260860.3
ATGGTCCTTTTTAGCAAATGAAAGCAGAGATCTGCTCAGTGGGAGGGAGGGCAGTAATCAGTAAATGGACTGCGACTGAATTTACAGACACGATTCTTTACATTGAGGCAGCACCCAGCGGAGGAAAATGAACACCGAGCCAGTGGTGATCGTGTCTGCGGCCCGGACTCCTATAGGGTCTTTCAATGGGGCATTAAGCACTGTGCCCCTTAATGACCTGGGTGCTGTTGTCATTAAGGATGTACTTAAGAGAGCCAGTATAAAACCAGAGGAAGTATCTGAAGTCATCATGGGACATGTGCTCACTGCTGGTCATGGGCAGAACCCCACGAGGCAGGCTAGTGTTGAGGCAGGAATCCCATACCCAGTACCAGCATGGAGCTGTCAGATGGTTTGTGGTTCTGGTTTGAAGGCTGTGTGCCTTGGAGCTCAATCCATTATGATGGGGGAGTCCAATGTGGTGGTGGCAGGGGGCATGGAAAGCATGAGCCGGGCACCTCACACAGTTCAAATGAGGGCAGGAGTAAAGATGGGAGATGCTTCACTGCAGGATTCTATAGTGGCTGATGGACTCACTGATGCTTTTCACAACTGCCACATGGGCATCACAGcgGAGAACGTGGCTAAGCAGTGGACTGTTAGTCGAGAAGCTCAAGACCAGTATGCTGTCACCTCACAGAACAGAACCGAGGCAGCACAAAAAGCTGGTCACTTTAACCAGGAGATTGTGTCAGTGATTGTTCCTTCAAGGAAAGgCCCAGTTGAAGTGAAGGTTGATGAATTTCCTCGCCATGGTAGTAATATAGATGCCATGTCTAAACTGAAGCCATGTTTTGTGAAGGATGGGTCTGGATCAGTCACTGCTGGCAATGCATCAGGGATAAATGACGGAGCTGCAGCTACAGTTCTCATGAGCCAATCAGAGGCTCAGAGGCGGGGCCTTCGTCCAATGGCTAAAATCGTCTCATGGGCCCAAACTGGCCTTGACCCATCTATCATGGGCACAGGGCCAATATCTGCTATCAGGAAAGCAACAGAAAAAGCAGGGTGGCAGCTGGCTGAAGTAGATCTGTATGAGATCAATGAGGCCTTCGCTGCTCAGTGTGTGGCGGTGGTGCAGGACCTAGGACTGAACCCAGAcaagGTGAATATTAATGGAGGAGCTATATCTCTGGGACACCCTCTGGGTATGTCTGGCTGCAGGGTGTTGGTTACCCTGCTGCATGCACTCCAGAGGACTGGGGGCAAAAAGGGAGTTGCTGCTCTGTGTATTGGTGGTGGAATGGGAATTGCTATGTGTGTAGAGAGAGTTTAAAACAATCCGTTCTCAcacattaatgcattaaaagcAGCTGCTGATAGGGACAACTGGATCACGTTCGATTTTTACATGAATTCTGTTGGTGTTCATTTATgaactgtatttttgtaattcagtcaaatgttaaatattttagttaaagcaATGTTAAGTCAATGAACAGTTAATTCTCAAGAGGTACTTTACAACTTGCAGTGCAGAATATCATTAGTTCTGGTTTAGATCTGACTGGTATGTCTAGAGTGCAATTTTGGGAATGAGCGTTAAACTATTGcacacaaaactaaacataAAACTGACAGAAAAGAACAGTCTTATCCTGTACGTCCTGCacgaaatgtattgttttttaaaacctttaaacatTCCATGCAATAGAAGCATTACTGTAATACTCACGTTTTGTGGATCCGGCCTGCAGTATTGATCAGACCTGTTGCCAGCAGTAATCACATTCATTATAATGATCGGCCAGGGTCCGCAGAAGAGTACATGCAATAGATCAGACCTAAGAAAACACTACCATAGACTTGCCTTAGAGAACCTTGTGCCATAAGGCTAAACTAGCCTCATTCCTGTGCTTTCTGTAGACGGCTTTGTTATTGATGTAAGGAGTACTGTACAGTGCTTGTGTTTGCTTGAAATCTCAAGGGAAAATGTGTTTACATATCTAACCTTCACTGTGtatttcctcaataaataaataatgcaacgTGA

Function

symbol description
acat2 Predicted to enable acetyl-CoA C-acetyltransferase activity. Predicted to be involved in fatty acid beta-oxidation. Predicted to be active in mitochondrion. Is expressed in central nervous system; hindbrain; liver; neurons; and yolk syncytial layer. Human ortholog(s) of this gene implicated in coronary artery disease. Orthologous to human ACAT2 (acetyl-CoA acetyltransferase 2).

NR:

description
acetyl-CoA acetyltransferase, cytosolic

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0003985 acetyl-CoA C-acetyltransferase activity molecular_function

KEGG:

id description
K00626 ACAT, atoB; acetyl-CoA C-acetyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007260860.3 True 2038 mRNA 0.46 9 42746474 42751642

Neighbor

gene id symbol gene type direction distance location
kif25 kif25,LOC107602573,LOC105010024 coding downstream 1745 42728426 ~ 42744729 (-)
LOC103036422 LOC103036422,LOC108411258 coding downstream 19409 42719549 ~ 42727065 (-)
rps7 rps7,LOC107668222,LOC107601753,LOC107726469 coding downstream 429732 42310350 ~ 42316742 (-)
allc allc coding downstream 438484 42299869 ~ 42307990 (-)
sox11 sox11b,LOC108411020,LOC107756575,LOC107668258,LOC107601767,LOC108258189 coding downstream 685023 42058830 ~ 42061451 (-)
wtap wtap,LOC107696108,LOC107601562,LOC107726473,LOC107549122 coding upstream 367 42752009 ~ 42759990 (-)
fndc1 fndc1,LOC107549078 coding upstream 74426 42826068 ~ 42891072 (-)
c3h2orf70 NA coding upstream 144131 42895773 ~ 42898483 (-)
LOC103042238 hpcal1,LOC108411356,LOC107549126,LOC101077504,LOC108258003 coding upstream 300246 43051888 ~ 43063168 (-)
slc25a29 slc25a29,LOC107678310,LOC107557018,LOC107728117,LOC108257962,LOC107564594 coding upstream 427785 43179427 ~ 43189359 (-)
G25642 acbd3,LOC107601671,LOC107726445,LOC107668205 non-coding downstream 201757 42542636 ~ 42544717 (-)
G25628 NA non-coding downstream 229726 42511497 ~ 42516748 (-)
G25607 NA non-coding downstream 349438 42396810 ~ 42397036 (-)
G25579 NA non-coding downstream 420122 42324834 ~ 42326352 (-)
G25578 NA non-coding downstream 421742 42317545 ~ 42324732 (-)
G25691 NA non-coding upstream 50113 42801755 ~ 42804141 (-)
G25697 NA non-coding upstream 71843 42823485 ~ 42824112 (-)
G25718 NA non-coding upstream 164419 42916061 ~ 42916736 (-)
G25739 NA non-coding upstream 280036 43031678 ~ 43033442 (-)
G25769 pdia6 non-coding upstream 294460 43046102 ~ 43047586 (-)
G25678 NA other downstream 28085 42717666 ~ 42718389 (-)
LOC111196586 LOC108262118 other downstream 866050 41869024 ~ 41880424 (-)
LOC111196508 NA other downstream 880630 41856095 ~ 41865844 (-)
arhgap11a NA other downstream 1303980 41436041 ~ 41442494 (-)
G25265 slco5a1 other downstream 1527645 41214421 ~ 41218829 (-)
G25785 NA other upstream 347180 43098822 ~ 43111401 (-)
LOC103027084 LOC108416115,LOC103358919 other upstream 743777 43495419 ~ 43517157 (-)
G25967 mcm3l,LOC108416133,LOC108258154,LOC107697457 other upstream 923383 43675025 ~ 43678862 (-)
cbr4 cbr4,LOC107597475,LOC107665353 other upstream 1138987 43890629 ~ 43899760 (-)
fkbp1b fkbp1b other upstream 2017622 44769264 ~ 44799505 (-)

Expression


Co-expression Network