LOC103029737 (lrfn5b,LOC108411613,LOC108257655,LOC107712211,LOC107564320)


Basic Information

Item Value
gene id LOC103029737
gene name lrfn5b,LOC108411613,LOC108257655,LOC107712211,LOC107564320
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 46317964 ~ 46329110 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_015601184.2
TCATAGTGGCTATACAACAGCAGCACACAGCACGGATTAATGAAGTTCACCTTGATAGTGCCACTTAATCTCTCCTTCCTGAATGAAGCTGATTCTTTGCTTGAGCTTAATGTAGATGCTTAAGTGGTCCCATTAGCGTCCAGAGCCTTCTTCTAGATAGCATCAACAGAAGACGCGGGCGGTGATGAGAGGCCCTCCCTGCTTTTTTCCTCAGTTCTGAGAGGTTTGAGTttgggcagtagcagcagcagtataaCAGTAGTCGTCCAGATAGATGATCCATCCACGTTTCTCCTgacgcttcctatagcttcttCTTAGGCTCCTAGGGGGGGTGTAGGTAGGAATGCATGCTTTTCCAAAGCTCTCCAAAGGCACAGTGTGGAGCATGCACGTCCACCTGCAGTGTGCAGTACTGCGCCACAGCAGAGGAGGGGTGTGAAGTGGAAGGCTTACGGATGGGACACCTGCTCCATCCTCCCAGCCTGACACCACTGGAGGCCATATTTGGGGCGGGTGAGGCGGTGGTACTGATGGTAGTGGTGGTAGAGTAGGGATGGATGTGGGAGCAGACATGTGCTGGGGTGAAGTGATCTGAGAAAGAGCCGGGCGTTTCTTCTCAGTGAGGGggaaaaagagtaagagagagagaaagaaagagaggataaTAAGGGAAGCTATGCATATCTGGAGAGAAGACATGCAGGAGCAACAGAGGCGCGGAGAGACAGAAATGAAGGGTCTCTGAAGAAGGCGGACCCCTTTCCTCCTtcttcacacactgcacacgTTGGGACTGCTTGCTTTGGTTGCTTTTTCCTCTCTTGTGCTCGCGTCTCTTCTTCACTCCTGCAGAGATGGGCTTCTTCTTGAAGGACGCGCGCGTACCCGGAGCGCATCGCCGTCTTATTTGACCATCGTCGCCCCTCTTTATTATCTATCTGGGTCATCCGAAAGGAGCTTGGAGCAggtggatgcatggatggatagatggacggATGGACGGACCGCATGGACGAAACGAAAAATGACTGAGTAATTCGCAAAGGAAAACGACGGCTTTTTCAGCAGCTGCAAAGCTAATCTCCCTCTTATCTCCACAAGGTGTGTTATCACAACAGTGAATCCAGATGGAGACGCTATTTGTTTACTTGGTGGTCATTGTCATGGCAGTAAAAGCCCAGAAGATCCAAATATGTCCCAAACGCTGCATTTGTCAGGTGCTGTCTCCCAACCTGGCCACCTTATGTGATAAAAAGGGGCTGCTTTTTGTGCCCCCGAACATTGACAGGCACACTGTCGAACTGCGGCTGGGTGACAATTTTGTAACGACCATTAAACGGAAGGACTTtgccaacatgaccaagcttgTAGACCTGACCCTCTCTAGAAACACAATAGGCTCTGTGGCACCTCATGCTTTTAACGACTTGGAGAACTTGCGTGCCCTACACCTGGACAGCAATCGTCTTACGCGCATCACGAACGACACGTTTAGCGGTATGTCCAAACTCCATCATCTCATTCTGAATAACAACCAGCTCACTTACATCCACATCGGAGCCTTTAATGATCTCCTGGCCCTCGAGGAGCTTGATCTATCCTACAACAACCTAGAGGGTGCTCCATGGGTGGCCATCCAGCGTATGATCAGCCTCCACACCTTAAGCCTGGACCATAACATGATTGATTATATACCTGAGGGGACGTTTTCAGGACTCCTGAAGCTCAAGCGACTAGACGTTACCTCCAACAAGCTCCAGAAGCTTCCACCGGATCCGGTCTTCCAGCGAGCAGGTGTTTTGGCCACCTCAGGTATCTTGGGGCCATCATCATTTGCACTGAGTTTTGGAGGGAACCCACTGCGCTGTAACTGTGAGCTGCTGTGGTTAAGGAGGCTGCGGCGTGAGGATGACCTGGAGACGTGTGCGGCTCCCCAACACCTTTCTGGACGCTACTTTTGGACAGTGTCTGAGGAAGAGTTTCTGTGTGAGCCTCCTCTCATTACACGTCACTCGCAGGAGACCAGGGCATTGGAGGGTCAGCATGTTACCCTGCGCTGCAAAGCTCGGGGGGACCCAGATCCCGTCATCCACTGGATCGCCCCTGATGGAAGGCTGGTTTCCAACTCATCCAGAACGGTTGTCCACAGTGACGGGACACTAGAAATACTCATTAGCACAGTGAAGGATTCAGGTTCTTTTACCTGTGTGGCGTCCAACCCATCTGGAGAAGCTCAACAGAGTGTGGACTTGCTTATCACCAAACTTCCGCATTTCACGAATGACACAAGCCTGGTCCAGGAGCCTGACCCTGGCTCGTCAGACATTGCTACATCCACTAAAGTGGGTGGAGATGGAAGCCCTGCCATTGGCAACACCAAAGCTGGACAAGAAAAGCGGGTGGTGATCTCTGAAATCACGTCCTCCTCAGCCCTGGTGAAGTTCAACCTGCAGCGGAATATTCCAGGGATTCGGATGTTCCAAATCCAGTACAACGGCACTTATGATGACTCTCTGGTGTACAGAATGATCCCCCCAACCAGTAAAACCATCCTCGTCAACAATTTAGCAGCTGGGACGCTGTATGACCTCTGTGTGCTAGCCATTTATGATGATGTGATCACCACCCTGACGGCTACACGTGTGGTGGGATGCCTTCACTTCTCCACAGAGCCCCAGTATCTCCGCTGCCACTTCATGCAGTCCCAGTTTCTCGGAGGCACCATCGTCGTCATCATCGGAGGCGTCATCGTGGCCTCTGTCCTGTCTTTCATCATTTTCCTCATTGTGCGCTACCGGGTTTGCAACCAGGAGGGAGCAGACAAGGGGGTGGAGCTGGGTGACTTGCGTTCGCAGTCCAGGAGTGAGCAGCTGCAGGGCTGCGGAATCATCAAATCCATGTCAAAGCAGGTTCTTGGTGCAGAAAGGGACTCCTGCCGGAAAGTGTCACCACAGATGGAGTCAGTTCCAGCTCCTGCTCAAGCCGTGGCGCCCCAGCCGAAGCCTCGACCGCCCCCTAAACCCAGCCTCCCCGACTGCACAGTGTCTACCTCTGCCGCCAGCCACAGCTGGCACCCCGCCTCTCCCAACACCCGACGCCCCGCGCATGCTGTCGCCGCCGCCACCGCTAAACCTGCCATCCCACATAAAAAGGACACGCAGGTCAGCATGGAGCCCGacaacagcaacaaaaacaaCTCAACCAAGGCTCGGCCCAAATCGGCTCAAATCCGGGCCTACTCCACCATGGTGACCCCGGCATCCAGGAGAGCACAGCTGGAATCCTTGCACAACTACATGACTGTCCCGGTGGGGTACGCGAGAGTGAGCCGCAGGCACTCTCTGAATGTAGACTCCTGTAAACAACCAAGTTACATGActtaccagcagcagcagcagcagactggCAGCCTGCGCTCCAAACGCAGCCTGTCGATGAGCGGCGATCTGCCCCAGTTGGACACTTCAGGCAGACTCCACGGGAAAGACTCACTGTCCAGATCAGAGTGGGTTCTAGAAAGCACACTATAAtgaagatttttattttgttaaaaatctTACTGCATTGGTTTTTGATGGACTCACAGATCCTATTATGATCTGATGTCTTATAGCTAAGACTGCGaaccttttaaaaagtcttCAGATTCCATCTTGGACATGGCACTCTTATAttatgtgaattaaaaaaaaagagaaacctAACATAAAGGACTGGTACATGCCAATGTTTTTTAAGCACAAGCAAAATACcattttctgcatattctaaAATAATCCCACCTGTACACTACTTTGTTATATGGAATAATACATATGGTACATCGTGTACAAACAtgttacattgtgtaaaataaaatgtgaaaagccA

Function

symbol description
lrfn5b Is expressed in central nervous system and cranial ganglion. Orthologous to human LRFN5 (leucine rich repeat and fibronectin type III domain containing 5).

NR:

description
PREDICTED: leucine-rich repeat and fibronectin type-III domain-containing protein 5-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_015601184.2 True 3873 mRNA 0.51 3 46317964 46329110

Neighbor

gene id symbol gene type direction distance location
LOC103025714 NA coding downstream 188722 46108572 ~ 46129242 (-)
LOC103025404 NA coding downstream 211795 46078208 ~ 46106169 (-)
pak5 pak5 coding downstream 262026 45948028 ~ 46055938 (-)
LOC111194348 NA coding downstream 265241 46049834 ~ 46052723 (-)
fermt1 fermt1,LOC106571740 coding downstream 786571 45515195 ~ 45531393 (-)
LOC103042705 samd15 coding upstream 296 46329406 ~ 46337541 (-)
LOC103043020 LOC103043020,LOC108411620,LOC108258012,LOC103375802 coding upstream 23099 46352209 ~ 46360826 (-)
LOC111194350 NA coding upstream 35019 46364129 ~ 46374917 (-)
LOC103044046 NA coding upstream 58549 46387659 ~ 46395067 (-)
LOC107197829 NA coding upstream 67389 46396499 ~ 46404613 (-)
G26605 NA non-coding downstream 155865 46076136 ~ 46162099 (-)
G26612 NA non-coding downstream 250776 46066648 ~ 46067188 (-)
G26564 NA non-coding downstream 468372 45847617 ~ 45849592 (-)
G26563 NA non-coding downstream 473033 45843174 ~ 45844931 (-)
LOC111197418 NA non-coding downstream 575114 45733316 ~ 45742850 (-)
G26663 NA non-coding upstream 32608 46361718 ~ 46361918 (-)
G26666 NA non-coding upstream 66851 46395961 ~ 46409064 (-)
LOC111197648 NA non-coding upstream 249177 46578287 ~ 46599431 (-)
G26751 NA non-coding upstream 333009 46662119 ~ 46663963 (-)
G26771 NA non-coding upstream 776205 47105315 ~ 47106324 (-)
G26636 LOC108411685,LOC108258103,LOC101066055,LOC105902101 other downstream 25158 46292087 ~ 46292806 (-)
G26588 NA other downstream 382342 45935153 ~ 45935622 (-)
G26388 NA other downstream 880379 45436109 ~ 45437585 (-)
G26295 atad2b,LOC107697175,LOC107603081 other downstream 1432163 44882778 ~ 44885801 (-)
ubxn2a ubxn2a,LOC107603085,LOC107750080,LOC107697178 other downstream 1447274 44856099 ~ 44870690 (-)
naa30 naa30,LOC108270341 other upstream 98307 46427417 ~ 46435925 (-)
G26695 prpf39,LOC107729032 other upstream 189761 46518871 ~ 46525996 (-)
fkbp3 fkbp3 other upstream 204585 46533695 ~ 46535835 (-)
G26754 NA other upstream 375237 46704347 ~ 46738736 (-)
LOC103039734 LOC108424428 other upstream 1888396 48217506 ~ 48324662 (-)

Expression


Co-expression Network