LOC103031849 (kctd1,LOC108414594,LOC103031849,LOC108442723,LOC106599692,LOC107723550,LOC107561046,LOC107684804,LOC107746021,LOC107701518)


Basic Information

Item Value
gene id LOC103031849
gene name kctd1,LOC108414594,LOC103031849,LOC108442723,LOC106599692,LOC107723550,LOC107561046,LOC107684804,LOC107746021,LOC107701518
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 62009807 ~ 62039839 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_015601215.2
CATCCATTTGCAGGAAGCGCCCGGGGCAGCGCTCCATCCGCGCGCTGCAATCACAGCGTTCATCAGCGGCTCCGCAGCAGCTCACAGCCAGGGGAGCCTCCGCGCAGCCGCCGAGACACAGCGCGCGCGCAGCCGGCCTGCCCGACTGCACCAACAGCAGCACCACAACCCCAGAATCAGAACCATTACTAGCAGCTCAGTATCGCCGCCTTTATCGCTCTGTTCCGCGGCGCGCGAGCTGAGAGCGGAGCGCGACGGGGGCGGCAGGGCGCGCGGATACCCGGCGgcccacacgcacacacacacagcccggAGCTCAAGCACTCAGCGCTGGAGCGGAGCCAAGCCGTGCTGAACGAGAGAGGGGGCACCTGGTCCAGGAGCATTGCAGCAGCAGCGTGGCAATGTCGACTCGGCCGCTGTTGGCTCGCTCGCCGGCCTCCCCGCTGGGCACAGCTGGCATCCCTACGCCTGCCCAGCTCACCAAGGCCAACGCGCCAGTGCACATCGACGTGGGCGGACACATGTACACCAGCAGCCTCGCCACACTCACCAAATACCCTGAATCTAGAATCGGACGTTTGTTTGATGGCACAGAGCCCATAGTACTGGACAGTCTAAAGCAGCACTACTTCATTGATCGTGATGGTCACATGTTCCGCTACATCCTCAACTTCCTCAGGACCTCCAAGTTGCTCATCCCAGATGACTTTAAGgactACTCTCTGCTGTACGAGGAAGCCCGGTATTTCCAGCTGCAGCCACTTCAGACTGAGCTGGAGCGTTGGCGATCAGAGAGAGACTCAGGCTGTGTGTCAcggctgtgtgagtgtgtggtggtgcGAGTAGCTCCAGAGCTGGGTGAAAGGATCACGCTGAGCGGGGATAAGGCTCTTATTGAAGACATCTTCCCTGAGATCGGAGACGTCATGTGTAATTCAGTGAACGCAGGATGGAACCACGACTCCACCCATGTAATTCGCTTCCCTCTGAATGGGTACTGCCATCTCAACTCTGTGCAGgtTCTGGAGCGCCTCCAGCAGAGGGGGTTTGAGATTGCTGGCTCATGCGGAGGTGGTGTGGACTCGTCTCAGTTCAGTGAATATGTTTTGCGAAGGGAGGTCAAGCGAGGTCAGCGTGGGGTCACAACCTCCGTCATCCGAATAAAACAGGAGCCACTGGACTAAAAAACACATTGCAGAAAAGACAAACGACTTTTTCAAAGGACAGACATGACAATGGATTGTTTCTACTACAGCCCTTCACACTTGGCCAAAAGacacattttgtcattttgagtAAACACAGCCTCGGTAACcaaatacaatattttcaaaACATATACAGTGCAGTTTGTGCAAAGGTCTGGGCTTCTTACTGAGTCTAGACTTAATAAAAACCCTTATGGCAAAAATCACAACttgtaaacagtttttttgtagctgctaaaaaaaaatccgtTTTTCCACACTTCTTTGCAGAATGCCACATCTAAGATCATTTTTGCTTGTCTTACAAATGCAGCATGCTCAAGCTTTATTCAGAAACGTGtttctttattgtttctttaataGAAGCCTTTAGCCTTTTAACTAATGATTTTACTTTTGCATTCAGGATTTGAGGGTTCATTCTGTAATAAATTCTTTCTACCACCTGTGCCATATTACCAATACCACTGGTTGTAACTGAACCCCAGTggcaaatatataattaaagagatatatttatacactttaCAGCAATGAGTTATCTTTCATTACATacagtttcttttttgtccAAATACACCTTCGGTGATTGTGACCAGAAAAGTGTTATATGTTGACTTAGCACTTAGCACTTATctcatcataatttttttacataatctgTATTAGACTGTAAATGTTGAATTTTGTGATGAGGTCAAaggtaatgtttttatttcatgtttcttCCTGGAGGACTCTGTTTCTTCCAGTATAGCTGAACCACCTTctcattaatttaaatgttcatGCAGGTTCTTGGCAGTTACGATCATGGGAGCAATTCTCTAGTGTAGTGTATCTCCAACATCagtaatattgttattatttcattagcaaattttttaatatattttaggggTGCCTATGTCTGATAAGTGTTAGTACAAGATTTAAAGAGTCGGGTAATTTACAGCTCCTCAGgcctcatttgtttatttttaaatctaagcATCTGGAATATTTAGGGTGCAAAACTTTTAAAGGGGTCAAACTGATgatgctgatttatttatttatttatttatatgatctaaaaacaaaacacacttctacaataataaaaagtgtGTAGTAACTGTGCATTTAAGTTTGCTGAAAATATTTGGTCATTTATCGATGCTGTGTGTTACtacttctaaataaaaaaaaaaaaaagataaaatatgtcATCtagacaagggtgcccaaactcTCGTTTAAGACTGTATATACAGTGGATATACAcaacacatacaaaaaatatgatatgtAATGggcaaaaacatatttttttctgatgatTTGAATTGTCATGGTCTtataaacacataatttcacCTGATTTAATCTGATTATGGCAAGCACAagtttgttttaaaactttttggcTTGTATTTGCTGGGTTCCTCTGCACTGGGTGTAATAAACAGAAGAAAAGTCTATAGAAATCCAATCAATGCCCTGTGTAAGGAACTCAATCAAGGAAACTGTCCTATAAACTGTGTCGAACCAGCTGTACTGACGGAGATAAAAATGACCTTCACAGTTCAGAGAATCTGAATTGAGTATTGCATACACAAACTCATCACACAAAATGAGggattaataatttaaacatagACAATTTCATACAGACACTTTACAGATGATTCTGGAGATGTACACTAAACAGAACACTTACAGCTGATGAAACATCTCTTTTTAACTTGAATGGAATTTGaacacaatcaaataaaaaaaataacatgttaACTTTCACAGCCATTAATCACAAGAGGAACAATCTGTTATTGTCATAGACAATTCAAATGCCCACCTATTAAAATCTGTTACTGATAtggaaattaatataaaatgagcCCAGGCTATATTTCTACTGTACAGTTAAACATGGGCATAATCAGGATTTTATACATgtcagtataaaaataaagttggaaacCATGTCTGCATACTTTTATTTTCTGGAAATTTATTTACATGTCATTACATAttatttcactattaaacatgtCCCTGAGTTc
>XM_022664205.1
TGCATGTTCTACAGCTCTATAGTCTGTATGAGGCAGAGTGTAGATGTGTAGTAGAAATACGCAGCAGTGTTTGTGGGTgtcaaactgtgtgtgtgtatgtgttcccTAACTCAGAAACGGTCCAATACAGACCCAAGtctcctttttatctctctctcactctcaggcATTGTGcattcaagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagcgtgagcaGGGGGGTGGTGGGTGTCTAGTGATTTTTGGGAATGCTCACTCTGTTCTTCTCTCTGCACCTTTAAGAAGAGCGCGTGCCTGAGCTCGTAGCTGAAGGTCACTAAAACacgcgcgcacgcacacacacacaaaagctcTCAGCTCTGCGGTCCAATatagcgcatgcgcagtgccccGGGACTCATACAGTCTCAGACTGCAATATGGCGAGAATGCCTGGCAGCGGGGAGCACTGCTCGAGCggcggggagagagagagggaagcgGGCGccggagaggaggaagaggaggaggagggaggagagaaGGGGGATATCCGGGCCGTCCGCATCACGGAGGCTGGAGAGtgcgaggaggaagaggaggaggaggaagaagaggaagaggaaggcgAGGAGCACGCGTGGGGGCAGCGCGCGGAGCCGCGGGACGCGCGGACCGAGCTGGAGCCCGAGCCGGACTCGGATCCCGAGGGGGAGGCGCGCTCGCGCTCCCGCTCGCCTTCCGCGCGCTGCAGGCTGAGCGAGAACACGCGCCTGGCCACGCGCTACGCCGTGCGCATCTTCCGCGAGTACCTGAGCGAGAGGGCGCAGAGCACGGACTTCGAGAGCATGGACAAGCACGCGCTGTGCCGCGCGCTGCGCTCCTTCTACGCCGAGGCGCGCTCCAAGAGCGGCCAGCTGTACAGCAAGTCGTCGCTGATCAGCATCCGCAGCTCGCTTAACCGGTACTTGAACGAGCCGCCCTTCTGCCGCGCGCTCGACCTCACCAAGGACCCGGAGCTGCGCGCCGCCAACCTGGCGCTCGCTGCCGCGCTGCGCCGCCTCGAGGAGCAGGGCGCCGGGCCCGTGGTGCAGAAGCAGGCTATAGCGCGCGCCGACCTGCGGCGCCTGTACGCGTCAGCGGCGCTGAGCGCGAGCTCCCCGTTCGGGCTGCTCAACAAAGTGTGGTTCGAGACGTGCATGTACTTCTGTACGCGCGGCCGCGAGAACCAGCGCGAGCTTGAGGAGGACTCGTTCGGGCTGGCGGAGGACGAGGACGGCCGCCGCTTCGTCTACTTCAAGTCGCTCGGCGGCCCGTACCACCGGTCGCGCGCCACGGGAGGCGGGAGCAGCggtggcagcagcagtagcagcagcacgTGGGGCAAAAGGCGCGCGGACGCGGACGCCGACGAGGAGAGCGCGCCGCGCATGTACGAGACGGGCACGGCGCTGTGTCCGTACGCGAGCTTTGTAAAGTACCTGACCAAGCGCAACCCCGCGTGCCGAGCCTTCTTCCAGCGGCCGCGCGAGCACTGTGGTGAGGCGGACTCCACCTGGTACGAGAACAAGGCCGTGGGCAAGAACCTGCTGGGCACGCGCATGCAGATGCTGTCGCGCGCCGCGCAGCTCTCCAAGACCTACACCAACCACTGCATCGGCGCCGTATCCATAGCCACGCTGCACAGCGTGGCGGGATTTGGCTCCAAGGCGCCCCCTCCGCTGCCATCACCACCCGCGCACGCGTTGCAAACGTTGCAGACGCTGCAGTCACTGCAGACGCCCCTTACGCGCACCTCGAGCTGTGCCAGAGCGGGAAAACGGCCGCCGCGCGCTCCCCTTTCTGCTAACCCAAACGCCTCCAGCACGGAGCCCGGCGTTCCCGCCAAAAGACTCTGCGCCGAGCCTCCGGCGGTCACTGCGGTCAGCGCTCGCGAGCGCAACGGAGAGGCACAGGCCACGCACGCGCCGCCAGCGCagGAGCATTGCAGCAGCAGCGTGGCAATGTCGACTCGGCCGCTGTTGGCTCGCTCGCCGGCCTCCCCGCTGGGCACAGCTGGCATCCCTACGCCTGCCCAGCTCACCAAGGCCAACGCGCCAGTGCACATCGACGTGGGCGGACACATGTACACCAGCAGCCTCGCCACACTCACCAAATACCCTGAATCTAGAATCGGACGTTTGTTTGATGGCACAGAGCCCATAGTACTGGACAGTCTAAAGCAGCACTACTTCATTGATCGTGATGGTCACATGTTCCGCTACATCCTCAACTTCCTCAGGACCTCCAAGTTGCTCATCCCAGATGACTTTAAGgactACTCTCTGCTGTACGAGGAAGCCCGGTATTTCCAGCTGCAGCCACTTCAGACTGAGCTGGAGCGTTGGCGATCAGAGAGAGACTCAGGCTGTGTGTCAcggctgtgtgagtgtgtggtggtgcGAGTAGCTCCAGAGCTGGGTGAAAGGATCACGCTGAGCGGGGATAAGGCTCTTATTGAAGACATCTTCCCTGAGATCGGAGACGTCATGTGTAATTCAGTGAACGCAGGATGGAACCACGACTCCACCCATGTAATTCGCTTCCCTCTGAATGGGTACTGCCATCTCAACTCTGTGCAGgtTCTGGAGCGCCTCCAGCAGAGGGGGTTTGAGATTGCTGGCTCATGCGGAGGTGGTGTGGACTCGTCTCAGTTCAGTGAATATGTTTTGCGAAGGGAGGTCAAGCGAGGTCAGCGTGGGGTCACAACCTCCGTCATCCGAATAAAACAGGAGCCACTGGACTAAAAAACACATTGCAGAAAAGACAAACGACTTTTTCAAAGGACAGACATGACAATGGATTGTTTCTACTACAGCCCTTCACACTTGGCCAAAAGacacattttgtcattttgagtAAACACAGCCTCGGTAACcaaatacaatattttcaaaACATATACAGTGCAGTTTGTGCAAAGGTCTGGGCTTCTTACTGAGTCTAGACTTAATAAAAACCCTTATGGCAAAAATCACAACttgtaaacagtttttttgtagctgctaaaaaaaaatccgtTTTTCCACACTTCTTTGCAGAATGCCACATCTAAGATCATTTTTGCTTGTCTTACAAATGCAGCATGCTCAAGCTTTATTCAGAAACGTGtttctttattgtttctttaataGAAGCCTTTAGCCTTTTAACTAATGATTTTACTTTTGCATTCAGGATTTGAGGGTTCATTCTGTAATAAATTCTTTCTACCACCTGTGCCATATTACCAATACCACTGGTTGTAACTGAACCCCAGTggcaaatatataattaaagagatatatttatacactttaCAGCAATGAGTTATCTTTCATTACATacagtttcttttttgtccAAATACACCTTCGGTGATTGTGACCAGAAAAGTGTTATATGTTGACTTAGCACTTAGCACTTATctcatcataatttttttacataatctgTATTAGACTGTAAATGTTGAATTTTGTGATGAGGTCAAaggtaatgtttttatttcatgtttcttCCTGGAGGACTCTGTTTCTTCCAGTATAGCTGAACCACCTTctcattaatttaaatgttcatGCAGGTTCTTGGCAGTTACGATCATGGGAGCAATTCTCTAGTGTAGTGTATCTCCAACATCagtaatattgttattatttcattagcaaattttttaatatattttaggggTGCCTATGTCTGATAAGTGTTAGTACAAGATTTAAAGAGTCGGGTAATTTACAGCTCCTCAGgcctcatttgtttatttttaaatctaagcATCTGGAATATTTAGGGTGCAAAACTTTTAAAGGGGTCAAACTGATgatgctgatttatttatttatttatttatatgatctaaaaacaaaacacacttctacaataataaaaagtgtGTAGTAACTGTGCATTTAAGTTTGCTGAAAATATTTGGTCATTTATCGATGCTGTGTGTTACtacttctaaataaaaaaaaaaaaaagataaaatatgtcATCtagacaagggtgcccaaactcTCGTTTAAGACTGTATATACAGTGGATATACAcaacacatacaaaaaatatgatatgtAATGggcaaaaacatatttttttctgatgatTTGAATTGTCATGGTCTtataaacacataatttcacCTGATTTAATCTGATTATGGCAAGCACAagtttgttttaaaactttttggcTTGTATTTGCTGGGTTCCTCTGCACTGGGTGTAATAAACAGAAGAAAAGTCTATAGAAATCCAATCAATGCCCTGTGTAAGGAACTCAATCAAGGAAACTGTCCTATAAACTGTGTCGAACCAGCTGTACTGACGGAGATAAAAATGACCTTCACAGTTCAGAGAATCTGAATTGAGTATTGCATACACAAACTCATCACACAAAATGAGggattaataatttaaacatagACAATTTCATACAGACACTTTACAGATGATTCTGGAGATGTACACTAAACAGAACACTTACAGCTGATGAAACATCTCTTTTTAACTTGAATGGAATTTGaacacaatcaaataaaaaaaataacatgttaACTTTCACAGCCATTAATCACAAGAGGAACAATCTGTTATTGTCATAGACAATTCAAATGCCCACCTATTAAAATCTGTTACTGATAtggaaattaatataaaatgagcCCAGGCTATATTTCTACTGTACAGTTAAACATGGGCATAATCAGGATTTTATACATgtcagtataaaaataaagttggaaacCATGTCTGCATACTTTTATTTTCTGGAAATTTATTTACATGTCATTACATAttatttcactattaaacatgtCCCTGAGTTc

Function

symbol description
kctd1 Predicted to enable transcription corepressor activity. Predicted to be involved in negative regulation of transcription, DNA-templated. Predicted to act upstream of or within protein homooligomerization. Predicted to be active in nucleus. Human ortholog(s) of this gene implicated in scalp-ear-nipple syndrome. Orthologous to human KCTD1 (potassium channel tetramerization domain containing 1).

NR:

description
PREDICTED: uncharacterized protein LOC108414594

GO:

id name namespace
GO:0051260 protein homooligomerization biological_process

KEGG:

id description
K21754 KCTD1_15; BTB/POZ domain-containing protein KCTD1/15

RNA

RNA id representative length rna type GC content exon number start site end site
XM_015601215.2 False 3256 mRNA 0.42 5 62009807 62039839
XM_022664205.1 True 4840 mRNA 0.49 5 62009807 62025657

Neighbor

gene id symbol gene type direction distance location
LOC103031530 NA coding downstream 1181 61996353 ~ 62008626 (-)
LOC103042845 daam1b,LOC108412077,LOC107755211,LOC108257948,LOC107701451 coding downstream 194221 61707691 ~ 61815586 (-)
nudt14 nudt14,LOC107683965,LOC107755236,LOC107718404,LOC107701483 coding downstream 579528 61369995 ~ 61430279 (-)
LOC103028984 LOC108412120 coding downstream 808584 61169502 ~ 61201223 (-)
btbd6 btbd6,btbd6b,LOC107755235,LOC107718408,LOC107589075,LOC107701487,LOC107560384 coding downstream 1273956 60731202 ~ 60735851 (-)
LOC103030167 LOC108414838,LOC107684806,LOC107723431 coding upstream 6852 62046691 ~ 62057863 (-)
LOC111191939 NA coding upstream 173321 62213160 ~ 62214666 (-)
LOC103030680 cdh2,LOC108416271,LOC108258170,LOC107561048,LOC107746014,LOC107701519,LOC107571545 coding upstream 261308 62301147 ~ 62362260 (-)
LOC103034091 NA coding upstream 758780 62798619 ~ 62817748 (-)
b4galt6 b4galt6,LOC107712262,LOC107687169,LOC107712895 coding upstream 903234 62943073 ~ 62962918 (-)
G30047 psma8,LOC103029839,LOC107572146,LOC100304914,LOC107723426 non-coding downstream 19147 61984674 ~ 61990660 (-)
G30021 LOC108414863 non-coding downstream 26256 61979563 ~ 61983551 (-)
G30014 NA non-coding downstream 30345 61950417 ~ 61979462 (-)
G30058 NA non-coding upstream 70429 62110268 ~ 62110469 (-)
G30066 NA non-coding upstream 138353 62178192 ~ 62178433 (-)
G30083 NA non-coding upstream 193089 62232928 ~ 62236594 (-)
G30081 NA non-coding upstream 193979 62233818 ~ 62235787 (-)
G30093 NA non-coding upstream 220283 62260122 ~ 62260326 (-)
LOC103043586 mark3b,LOC108412004,LOC107697167,LOC108258043 other downstream 119078 61831841 ~ 61890729 (-)
LOC103029720 jag2,jag2b,LOC107718403,LOC107755239 other downstream 644929 61292876 ~ 61364878 (-)
LOC111191938 NA other downstream 1640193 60369046 ~ 60369614 (-)
LOC103035785 ppm1a,LOC108434987,LOC108258036 other downstream 1645063 60351272 ~ 60364744 (-)
LOC103034188 LOC108434976 other downstream 1847741 60149397 ~ 60162066 (-)
fryl fryl,LOC107683942,LOC107665346 other upstream 1097112 63136951 ~ 63288108 (-)
G30376 NA other upstream 1290205 63330044 ~ 63334846 (-)
usp46 usp46 other upstream 1393953 63433792 ~ 63485021 (-)
scfd2 scfd2 other upstream 1488442 63528281 ~ 63763673 (-)
LOC103036530 cyp2p7,cyp2j20,LOC108415355 other upstream 2734845 64774684 ~ 64799176 (-)

Expression


Co-expression Network