LOC103033334


Basic Information

Item Value
gene id LOC103033334
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 50573760 ~ 50580682 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_015601331.2
aagctgatggcaagctgcctGACCGGGtatcaaaccagcgatctcccgatcatagcacagctttagaccgctggaccacttcattttctgtatAGTTCTGATAAAACTCACTAATCCTAAAGAAAGatcactttaaaatgtattgaaaCAACTTAGATTGGGTAGCATGAACATGTGTGGCACGTGTGATATGGTGCaaacattttctctgattttgcagcCCCTCTCTGCCTTCCCGTAAGAAGCGATGCCAGTACAGGCCATTCAACAACGAcgaTGCCGATTCAAACAATCCCACAAGTTCTCATTCAGACACAGGACTGCCGGCTTTGCTGATGCTGATAATTCATGGTGACTACATAAGAGCGGGTGGTCGTTACTGCAGACACCAGTTTCGTAATACGTGTGTCCTGGACTCAATCCTGGCTGCTTTTCACATTTGTTACATCAAATTCCAAAATGTACGATCGCTTTTAGAATCTAACGCCACATTCAAAGTCATGATgtcttatttaaatgcagcaaacTATGAGGACGCAAAAGGACTATGGCTGCGATCACTGATAAAGTTTGATACAATTGATATTGACATTTTGGGCACTGTGAAAGATCATTTTCCAGTGCTTGCTAAACTGGTGTGTGCTGAAGTCGACTACTTCCAAGAAACACCTGATGACAGTCCTGTATATCAAACAACAATGAGCAAATTTCGTGCACTTGGTGACTTGAAGGCTTTGGGCCGTGCAGATGATCCCACAATGATCCTGGTTGTTCCTAAGGTTGTGAATCTGCCCCTGCTTGTTGAAGATGAAATCAAAAGgaCCTTTAAGCTTCAGTTTTTGCTGCTTGGTAAAGAGAATCACATGGCCATGTGTTTCAACTTCTTAGAGAGCCTGTGGATCCTCTATGATAACAATCCAGCGTTGAGGTCTTTTCGTCCTTTCAACTTAGAGGATCGGAACCGTTATATGATCTGCTGGGCTGGCTACATCAATACGACACAAGCTGACGTGCAAAATAATGCCTCTCCTGAGACTGGAGTAGGAGCACAACCTTTCAACTGTGGTTCATTCGGACAGCAAGAGGATCCTGAAGAGTTCATGAAAGAGATACTGGCGAGTTTGGGAGCTCTAGCTTGTGACAGCTCTGGCTCGGAATAATGTTCTAAATCAGAAGTACGCATCAAAAAACACTGTCTGTGATTATATGAAGTATAGTTTATAGTGTATTTCACTGCAATAGCATTAGGACTCCTGGTTGTAAcatgtttctttatttgtatcTGCTGCTgccttgtgtttttgtgtttttctgtgcgTAGTATTACTTTTTGCCACCAGAGTATATGCTACCATGCCCAGACCAATCCAGTAACTtctgttagcctgttagctttgttacattttataaatttcAGAAAATAAGGAGTGAGAGCCATTCTAAGAGGGAGTTAGGGAGGTTtgtgtattttagtttattttgtttcagaATTAGGTAGTTGTTTATCATTAGATTTTGTTTGATGTTCACACCTGATGTCATATTTTCTACACTAATTAACTGGTTTACACAGTAATTACTGTCCTGTGTTTGGTCTGGATGGGGGTCCAGGAAGAGActgcactctctctttctctgtttattgCAGATCATAACAatagtatgtttaaaatggtACAATGCACCACTTGTTTctacattataatacagtataattactttttaaggTAGCACTTtcactgtatttattgttcagtATTGTCCAGCTTTTGTGAAAACCTTCTGAAGTGGATCTCAGACTCTGTTCCGTTCAGTttgttggttttgtttgtttaaataccTCTTTAGAATGTTTGCACATTGCCTAATTGTGAAATGTTACTAGTTTCAATGTAAACACATTTCTCATGTACAATACACAAGTGTTGCATAATGCctattaaatgtacagtttttacacatttctctttttaatgaatgtaataaaaataaataagaagagATCTGGACATAAATTGA
>XM_022662230.1
gtgtggaagggacagaggagctaacagcaccagacgtgacattctgtgtgtgtgaagctcATATGTGTGTGGCGTAGCAGCCAGctcttctctgattggctggatgcAGTGTGGCGGCCggattcatttaaataaagttgagaTCTGCTGAACTTTTTGCCGGAGGGTGGGGCTCCATTCAACAcaacgcaacccagcatgcaccgcGGCATGCAGCTGCTCTCTCTattgaaatgaatgggatgcGTCGGCActtaagtgccagtggacgTGCACCGATATACATATATtctacatatatacattaatacAGTAGTCACCTATTGTTTGTGTTAAATACTTCTATATAAAATAGTTAACATGCTACGTCATTTCACCCTTAGACCCCAATACCTAATAATACCAACACATATCTGTTTCTATTTACAAAGCTGTCAAAAACATGTTATGACAACTGATGTTTCTTATAATAAGTTTAATAAATGACAGTTTTTTGAAAGATCAAAGTTGATTGACATGGTGCCAGACAAATGTTTCCCTAATAAAGGGCCCTAGTATCTAATAGTGTCAACAGTTTATACCATCTTTTGACTGCTTACATAAACTCCTAATAATTACTTAAGTACTGctacataaatatatgtttaaatgctTGTACATGTGCTATGCAGCGACTGTCTCTGTGGTGACGCTGTGTTCACCTACGGGGTCTTCTTCTTTCACTTTTACTGTCACTTCCTGTTCTATGTGTTTGCGTggctgtattgtattttttggagGCATTGAGCCGACCATGGCGAGCAGCAGCGTGTAACCTTGTAGCGGTTTAGcCCCTCTCTGCCTTCCCGTAAGAAGCGATGCCAGTACAGGCCATTCAACAACGAcgaTGCCGATTCAAACAATCCCACAAGTTCTCATTCAGACACAGGACTGCCGGCTTTGCTGATGCTGATAATTCATGGTGACTACATAAGAGCGGGTGGTCGTTACTGCAGACACCAGTTTCGTAATACGTGTGTCCTGGACTCAATCCTGGCTGCTTTTCACATTTGTTACATCAAATTCCAAAATGTACGATCGCTTTTAGAATCTAACGCCACATTCAAAGTCATGATgtcttatttaaatgcagcaaacTATGAGGACGCAAAAGGACTATGGCTGCGATCACTGATAAAGTTTGATACAATTGATATTGACATTTTGGGCACTGTGAAAGATCATTTTCCAGTGCTTGCTAAACTGGTGTGTGCTGAAGTCGACTACTTCCAAGAAACACCTGATGACAGTCCTGTATATCAAACAACAATGAGCAAATTTCGTGCACTTGGTGACTTGAAGGCTTTGGGCCGTGCAGATGATCCCACAATGATCCTGGTTGTTCCTAAGGTTGTGAATCTGCCCCTGCTTGTTGAAGATGAAATCAAAAGgaCCTTTAAGCTTCAGTTTTTGCTGCTTGGTAAAGAGAATCACATGGCCATGTGTTTCAACTTCTTAGAGAGCCTGTGGATCCTCTATGATAACAATCCAGCGTTGAGGTCTTTTCGTCCTTTCAACTTAGAGGATCGGAACCGTTATATGATCTGCTGGGCTGGCTACATCAATACGACACAAGCTGACGTGCAAAATAATGCCTCTCCTGAGACTGGAGTAGGAGCACAACCTTTCAACTGTGGTTCATTCGGACAGCAAGAGGATCCTGAAGAGTTCATGAAAGAGATACTGGCGAGTTTGGGAGCTCTAGCTTGTGACAGCTCTGGCTCGGAATAATGTTCTAAATCAGAAGTACGCATCAAAAAACACTGTCTGTGATTATATGAAGTATAGTTTATAGTGTATTTCACTGCAATAGCATTAGGACTCCTGGTTGTAAcatgtttctttatttgtatcTGCTGCTgccttgtgtttttgtgtttttctgtgcgTAGTATTACTTTTTGCCACCAGAGTATATGCTACCATGCCCAGACCAATCCAGTAACTtctgttagcctgttagctttgttacattttataaatttcAGAAAATAAGGAGTGAGAGCCATTCTAAGAGGGAGTTAGGGAGGTTtgtgtattttagtttattttgtttcagaATTAGGTAGTTGTTTATCATTAGATTTTGTTTGATGTTCACACCTGATGTCATATTTTCTACACTAATTAACTGGTTTACACAGTAATTACTGTCCTGTGTTTGGTCTGGATGGGGGTCCAGGAAGAGActgcactctctctttctctgtttattgCAGATCATAACAatagtatgtttaaaatggtACAATGCACCACTTGTTTctacattataatacagtataattactttttaaggTAGCACTTtcactgtatttattgttcagtATTGTCCAGCTTTTGTGAAAACCTTCTGAAGTGGATCTCAGACTCTGTTCCGTTCAGTttgttggttttgtttgtttaaataccTCTTTAGAATGTTTGCACATTGCCTAATTGTGAAATGTTACTAGTTTCAATGTAAACACATTTCTCATGTACAATACACAAGTGTTGCATAATGCctattaaatgtacagtttttacacatttctctttttaatgaatgtaataaaaataaataagaagagATCTGGACATAAATTGA

Function

GO:

id name namespace
GO:0048884 neuromast development biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_015601331.2 False 2019 mRNA 0.39 6 50573760 50576687
XM_022662230.1 True 2629 mRNA 0.40 8 50573760 50580682

Neighbor

gene id symbol gene type direction distance location
epha7 epha7 coding downstream 632754 49808094 ~ 49941006 (-)
LOC111191920 NA coding downstream 1138107 49434912 ~ 49435653 (-)
map3k7 map3k7 coding downstream 1426277 49119962 ~ 49147483 (-)
bach2 bach2 coding downstream 1497866 48909552 ~ 49075894 (-)
mdn1 mdn1,LOC107755265,LOC107601919,LOC107737285,LOC107597457 coding downstream 1722115 48746900 ~ 48851645 (-)
map3k5 map3k5,LOC107653159,LOC107660504 coding upstream 1665 50582347 ~ 50703118 (-)
ankrd6 ankrd6 coding upstream 198652 50779334 ~ 50855315 (-)
pm20d2 pm20d2 coding upstream 568781 51149463 ~ 51174390 (-)
pnrc1 NA coding upstream 593802 51174484 ~ 51178351 (-)
gli3 gli3,LOC102779559,LOC108444237,LOC107675308 coding upstream 665107 51245789 ~ 51421392 (-)
G27409 NA non-coding downstream 24332 50546608 ~ 50549428 (-)
G27407 LOC108415780,LOC108431875 non-coding downstream 31701 50540122 ~ 50542059 (-)
G27398 NA non-coding downstream 36251 50521885 ~ 50537509 (-)
G27406 NA non-coding downstream 40330 50517022 ~ 50533430 (-)
LOC111188462 NA non-coding downstream 53076 50519575 ~ 50520684 (-)
G27425 NA non-coding upstream 141015 50721697 ~ 50723923 (-)
G27428 nup43 non-coding upstream 164276 50744958 ~ 50746883 (-)
G27454 NA non-coding upstream 304849 50885531 ~ 50885896 (-)
G27461 NA non-coding upstream 373936 50954618 ~ 50972656 (-)
G27502 LOC108427479,LOC103380695 non-coding upstream 448474 51029156 ~ 51031301 (-)
LOC103034285 NA other downstream 34088 50522899 ~ 50539672 (-)
G27400 NA other downstream 42121 50481889 ~ 50531639 (-)
G27258 NA other downstream 934316 49638759 ~ 49639444 (-)
G27145 NA other downstream 1682732 48886994 ~ 48891028 (-)
LOC103039734 LOC108424428 other downstream 2249098 48217506 ~ 48324662 (-)
pcmt1 pcmt1 other upstream 144381 50725063 ~ 50740434 (-)
LOC103040973 NA other upstream 1713198 52293880 ~ 52321920 (-)
G27821 LOC108413844,LOC108411774,LOC108411773,LOC108417426,LOC108417958 other upstream 2205790 52786472 ~ 52849906 (-)
trnal-cag NA other upstream 3041389 53622071 ~ 53622358 (-)
akap7 NA other upstream 3162198 53742880 ~ 53907412 (-)

Expression


Co-expression Network