LOC103035042 (LOC108439590)


Basic Information

Item Value
gene id LOC103035042
gene name LOC108439590
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 68004234 ~ 68018991 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_015601389.2
GATTATTGAGGACCTGCAGGACACCAAATATGCTCTCGATGCCAAAGAAAGGCAGGCAGAGAAGCTAAACAGGCAGCTCTGAGGAGaAGGTATATGCAGCCCAGACAGAACAAAATCATCAGTCCATTCCTGCAGTGACTGGATTAACGTCTGACGCAGACTGAGACAGACGGACAAGATGATTCTCCTGTCACTCCTGGGGGTCCTGTACCTATTCACAGCTCCAGTGTTCTCTttAAGGCAGCCGAGTGATGACCACTGGGGAGAATACGGCCCGTATGGAGAGTGCAGCCGAACCTGTGGCACTGGAGTAGCTGTAAGGACCAGGGTTTGCAACACTATgagGACTGATGGTGGACATAATTGTGTGGGACCTTCTAAGTCTTACAAAACCTGCAACACTCAGGAATGTCCCTCTGGATCTCGTGATTTCCGTGAGGAGCAGTGCTCCCAGTTTGACAGGATGGATTTCCAGGGCAAACGCTACACCTGGCAGCCATACTATGGAGCTTCAAACCCTTGTGAGCTGGTGTGTGTACCCAGAGGAGAGAATTTCTACTATCGCCATCGTCCAACTGTGGTTGACGGCACTATGTGTTACGTGGGCCGCAATGACATCTGTGTGGAGGGTGTCTGCAGGGCGGTGAGTCATGGTGAAATTGTGGGCTTTGACCACACAACCCCTACTCGAGTCCAAAGACCTGGAATAACTCACTCTACAGAGGCTTACAGGTACTCTTTCGGTACATATTCTGAGTGCTCTGCACCATGTGGTGGGGGCATGCAGACTCGCAGTGTGAACTGCGCACTCAACGGACATGTAGTGGACGACTCATATTGTACCGCTCAGGGTCTACAGAGGCCAGCCGCCCAGAGAGCCTGCAACCAGCATGCTTGCGCTGAGTACAGTGTCGGCAGCTTCAGCTCGTGCTCAGTGACATGTGGGGAAGGTCAGCAGGTGAGGGAGGTTTTCTGCGTCGGTGGCCGAGGGGAGCGTCTCCCTGAGCATGATTGCAGGGGTCTCTCACGTCCAGCGGAGGTCAGAACCTGTCAGAAACCTGCCTGCCACCAGGTCTTCCGTTACTTCGTCAATGACTGGAGTCTGTGCACTCGGAGCTGTGGAACAGGGACACGGACCCGCAGAGTGGTGTGTATGGATCCGGATCGGAACCAGTATGGAGATGAGAGATGCTCCTCTCAGAGCAAACCTCGTACGGTGGAGAACTGCAACACACAGGCCTGCCCTGGAGCACAGCaggtgcCCAGTGTTCAAGACTCCAGGGGCCATGAGAGCACTCTGCGGGGATTTGTTCCCCATACACACAGTGAACCCTCAGTTCATACACCATACGATCCATACGCAACTGTAGTCGGCCCACACTGTGCTCAGTCTTACTACGGTTGCTGTCCTGATGGCCACACCGCCGCTTCAGGACCACGAGGAGAGGGCTGCACAGATGACTGTGTCAGAAGCAGATACGGCTGCTGTCTGGATGGAGTAACTACTGCTCAGGGCTTTGCCAGAGCAGGATGTCCCGAGTATACCCACAGGGATCATCCCTCTGTGCACGCTGAGGTGTGCTCTTTGCCCCGAGATGTTGGTTCATGTTATGAGTATAAGTCTCGTTTCTACTTTGACTCTTCTGCCCGTACCTGCACACAATTTTGGTATGGTGGCTGCCAGGGCAATGGCAACAACTTTGCCACTGTTGAGGAGTGCAGAAGAATGTGTGGAGAGTCAACCAGAGTCTCCACTTCTGCTCATGCCTACAGAGACCAGGCACCAAGAAGAGTCTATAGAGGAAGATATCGTGCCCGTGCTTGAAGAGGAACAAAAAATTTGAGTCAGAATCACATACACAAATGtatccatgtgtaaaaaaaacaaaacaaaacaaaataaaaataaatcatcatTCATCCATTCAGAAAACATGTGGTCAAATAGTTCAAATAGTTCTTTTAAAGCCTTTTAAGAATGTGTATcaaatgtaacataaatgaaCGTAACTTAATAGAGACAGTCCTCTTTAATGCTTAGGCCATATTGTTCTCCTGTCTGTAATCTCCCTGCTAAAAATCCAGCTATAACCAGCTGGTCATTCAGAGACCATATCCTATGCAGCTGTTACTTAGCTGGATTTTTATTAGCAGGGCTACAGTATGTGCTTTTCCTGTATCTTCATCTAAAAGATTAAATGGATTAAGCTGGTCAAA

Function

NR:

description
PREDICTED: papilin-like

GO:

id name namespace
GO:0004867 serine-type endopeptidase inhibitor activity molecular_function
GO:0008237 metallopeptidase activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_015601389.2 True 2217 mRNA 0.50 15 68004234 68018991

Neighbor

gene id symbol gene type direction distance location
LOC103045824 LOC108256302,LOC108439581 coding upstream 74319 67878540 ~ 67929915 (+)
swt1 NA coding upstream 425153 67533815 ~ 67579081 (+)
LOC103028999 NA coding upstream 475878 67515932 ~ 67528356 (+)
LOC111194389 NA coding upstream 807807 67195516 ~ 67196427 (+)
LOC111194388 NA coding upstream 810182 67193228 ~ 67194052 (+)
ppp4r3a ppp4r3a,smek1,LOC107555622,LOC107726626,LOC107698404,LOC107696138,LOC107601285 coding downstream 4946 68023937 ~ 68042368 (+)
nbas nbas,LOC108442060,LOC108439588,LOC106593169,LOC102775840 coding downstream 333436 68352427 ~ 68724643 (+)
nr2e1 nr2e1,LOC107726614,LOC107601200,LOC107726424,LOC107602776 coding downstream 1184843 69203834 ~ 69215863 (+)
afg1l NA coding downstream 1224727 69243718 ~ 69279965 (+)
foxo3 foxo3,LOC108436468,LOC107679488,LOC107601202,LOC107696126,LOC107601425,LOC107726429 coding downstream 1267024 69286015 ~ 69321707 (+)
G31583 NA non-coding upstream 16557 67987433 ~ 67987677 (+)
G31512 arpc5,LOC103045524,LOC104921830,LOC108431159,LOC107677751,LOC107722639 non-coding upstream 141961 67860633 ~ 67862273 (+)
G31479 NA non-coding upstream 349629 67654149 ~ 67654605 (+)
G31406 NA non-coding upstream 424327 67489637 ~ 67579907 (+)
G31410 NA non-coding upstream 487200 67482593 ~ 67517034 (+)
G31595 NA non-coding downstream 56206 68075197 ~ 68075581 (+)
G31596 NA non-coding downstream 77824 68096815 ~ 68097060 (+)
G31629 NA non-coding downstream 262349 68281340 ~ 68281596 (+)
G31648 NA non-coding downstream 606298 68625289 ~ 68660107 (+)
G31715 NA non-coding downstream 947488 68966479 ~ 68966810 (+)
hmcn1 hmcn1,LOC107698379,LOC107732365,LOC106560561 other upstream 159600 67691441 ~ 67844634 (+)
LOC103027733 NA other upstream 497336 67483335 ~ 67506898 (+)
G31407 NA other upstream 506537 67497203 ~ 67497697 (+)
G31355 NA other upstream 789048 67214305 ~ 67215186 (+)
G31000 NA other upstream 2166869 65828781 ~ 65837365 (+)
LOC103035359 erh,ERH,LOC107580641,LOC105904210,LOC106607637 other downstream 1049 68020040 ~ 68022940 (+)
G31702 fam84a other downstream 807652 68826643 ~ 68827572 (+)
G31718 sec63,LOC107726621,LOC107696131,LOC107726458 other downstream 988450 69007441 ~ 69161883 (+)
G31939 NA other downstream 2177934 70196925 ~ 70199742 (+)
G32009 cdc40 other downstream 2284045 70303036 ~ 70329028 (+)

Expression


Co-expression Network