LOC103045011 (LOC103045011,LOC108414810)


Basic Information

Item Value
gene id LOC103045011
gene name LOC103045011,LOC108414810
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 37984712 ~ 37988933 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_015603274.2
GGGAGTGTGTTCTCTGCCAAATTTAACCTCACACATACAGGGTCCTCATAGCTCCATAAAATCTCAGTCGAGCTCAGTGTGAGTCCAGCATTCACAGCGAAAGTGTgtctgagtgtttgtgtgtgtttgtaagggTTCCTGTGCTGGATGTGAACAAAGACTGAAGATATTGTTATTTCCTGTTGTCTGTATCTCCCTGTGTAGCGTGTGGAAATGGGAGACTTTGGTTCTCTGGGTAAATTGCTGGAGAAAGCTCAGGAGCACTCCACAGTTGTTGGAAAAGTATGGCTGACCGTTCTCTTCATTTTCCGTATTCTGGTGCTCGGAGCAGCAGCTGAGAAGGTCTGGGGAGATGAACAGTCAGGTTTCACCTGCGATACGAAACAGCCTGGTTGTCAGAACGTCTGCTATGACAAAACCTTCCCCATTTCTCATATCCGCTTCTGGGTCATGCAGATCATTTTCATCTCTCTGCCAACACTCATCTACTTGGGTCACATCCTGCATCTGGTGAGGATGGATGAGAAGAGGAAGGAATTGATAAAATCTGGCCAGATCTCTGAGAAGCAAGCACTACTGCCTTCTGGGAAATCCCGGAAAGCTCCGATCATCGATGAACGTGGAAAAATCCACCTGCAGGGAGCGCTCCTTCGCACCTACGTGCTTAATGTCATCTTCAAGACACTGCTGGAGGTGGGCTTTATTGTGGCACAGTACTTCCTGTATGGGTTCCAGCTGAAGCCCATGTACACCTGCAGCAGTTGGCCATGTCCAAACACAGTGAACTGCTACATCTCTCGACCAACGGAGAAAACCATCTTTATCCTGTTCATGCTGGCTGTGGCCTGCTTGTCGCTGCTGCTGAACATGGTGGAGATGTACCACCTGGGCTTCACCAAGTGCCGCCAGGGCCTGCGATATCGCCGCTCACAGCTCAATGGCAACCCTAAAGGCCCCAGTGAGGATGCTGTGGTGCCGTTCGTGGCCAGTTTCCCTTATTTCCCAACCCATCCACCTGAACACCAGTACAGAATCCCCGACATGGATGCCACATTACCCGCCTACAAACAGAACCGCCAGAATCTTGCTGTAGAGCGCGGTAGCGGCAAGCCACCTGGCCTGGGAACCAAGACAGACACAATGGAAACCCAGATTGACACCACCAGCATAGATGCCATGCCAGATGCTGTGGCCCTGGAGACCACCAGGGTGAAGAAGACCTCAAGTTCTGCCCCCGGATCTCCTTACAATCAGCGCAGGCCCAGCTACGCTAGTCGCTACAGCAACAACAAGACCAGGCTGGATGACCTGAAGATATGAGAAGAGTGAAGGGTGGAGGAATGAAGTTTGAGGCCAGAGTAAATGGTGGTGACATAAGAATTCTCACAGATCcatgaaaaataagtatttgtgTTTTCTGTAAATTTGTAAGAATTCCTAGTGTCACCGTGAGACTGAATGAGAGTGAAGCACTACCAGGAATGATTTCTTGgtatgtatgagagagagagagagagagacagagagaggggctTTGAATTGAATGAAACATGTGGTGACCAGTTATCTTAACATCACATACAaagaaatactaaaatacttgagaaaatgtattttgtttctttacttaatGGGACGTCAATTCCCTAATGGGAAAACGATTTCCTGAAAGTCTATGTGGACCTTGAGGTTGGGATGATACTAATGACCTTAGTGcaggtcatttttaaaaagtggtaTGTTAGTCAAATGATTACAACAAAAATATAGGGAATATTATTTgtgctgcactgtccactgtgggtggtactgctttttattacatattcccggtacacacgtgacactgtggacctcgccttgtcatgagcacattggccagtgttcaacctcacttacaagataacaccttacgtCTATATAGGTATggatgttcacaagccatcacaAGCCATTTTAGCTTGCcagtgttttgtatttgtatttgtacttGATTATTATTGTAACTGAATACTTATTTGTTTTGTCATGAAAGAAACAAACTTATACGGTTGATAAAAACCTCAAACAACAACTGTCATTCAcattaaatgccttaaaattttaatttctcaaatttttattttagatttaataataaataataatgacaagctagctatgttatctaTGTTATCAACACACTGATATATTCTAAGCTTTATTACCTTTACTGGAGTGAATAGCATCAGTGCTAGCTGCACAGATAACTTGTGAACAGGATCTAaggcaggtttttttttagtatcctAAATGAGTCCTTTAATCTGGCTGTTGTTTTCTTAACATAGTGTAGCAGAACCATTTTTCGATTTTGCAATGTATAACTGATTCATTATGCTGTTTACTCTGTGTGGAACAGAATAATCAGAATAGCGGTTGGGGGATAAAGCAAGTCTGACAGAAGTCAGTATAGGCTGCTGCTACCTAAACCCCACTGCTAACTGAGACTAGCAAAATTCCTGTttaaaacaaacaggaaatgaaGTAAAATCATATCTTACCTTTTCTGCTGCTAGTTTTGATTTTAGGGGAgtacttgtttatttatattttttggagcTGTTTTATGTTTTCCATTTCTCAGggtttttgctgtgttttgtcTCTATTGTAAAAACTGCtgtctgagccaatcagcttctTGTGTGCTGTAATGTCAATGTTTACCAATAAACCAAATTAAGCACAAATTTAAA

Function

NR:

description
gap junction Cx32.2 protein-like

GO:

id name namespace
GO:0010644 cell communication by electrical coupling biological_process
GO:0031444 slow-twitch skeletal muscle fiber contraction biological_process
GO:0044425 obsolete membrane part cellular_component
GO:0005886 plasma membrane cellular_component
GO:0005921 gap junction cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_015603274.2 True 2738 mRNA 0.43 2 37984712 37988933

Neighbor

gene id symbol gene type direction distance location
LOC103046026 cx27.5,LOC108414812,LOC107597344,LOC107687661,LOC107680359,LOC107592389,LOC107732608 coding upstream 9453 37969234 ~ 37975259 (+)
LOC103021778 NA coding upstream 347084 37633781 ~ 37637628 (+)
igbp1 igbp1 coding upstream 466845 37510934 ~ 37517867 (+)
LOC103022398 LOC103022398,LOC108412744,LOC108259816 coding upstream 480759 37497889 ~ 37503953 (+)
eda eda,LOC106603304,LOC107655915,LOC107757537,LOC106567777 coding upstream 494479 37438083 ~ 37490233 (+)
col10a1 col10a1,col10a1b,LOC108415286,LOC107548284,LOC107704357,LOC107710900 coding downstream 355456 38344389 ~ 38350324 (+)
LOC103029663 NA coding downstream 392657 38381590 ~ 38400321 (+)
hs3st5 hs3st5 coding downstream 427817 38416750 ~ 38427918 (+)
hdac2 hdac2,LOC108416127 coding downstream 439716 38428649 ~ 38438064 (+)
lama4 NA coding downstream 537645 38526578 ~ 38577159 (+)
G24340 fam76b,fa76b,LOC107680374,LOC107687655,LOC107592275,LOC106603374 non-coding upstream 40778 37938839 ~ 37943934 (+)
G24341 LOC108415597 non-coding upstream 74189 37906277 ~ 37910523 (+)
G24334 LOC108415958,LOC108259810,LOC106603378,LOC105025982 non-coding upstream 95959 37885981 ~ 37888753 (+)
G24321 NA non-coding upstream 116301 37865835 ~ 37868411 (+)
G24324 NA non-coding upstream 119803 37863362 ~ 37864909 (+)
G24359 NA non-coding downstream 38840 38027773 ~ 38036748 (+)
G24432 NA non-coding downstream 254552 38243485 ~ 38246289 (+)
G24437 ufl1 non-coding downstream 267268 38256201 ~ 38259249 (+)
G24474 NA non-coding downstream 451419 38440352 ~ 38440660 (+)
G24476 NA non-coding downstream 461062 38449995 ~ 38492705 (+)
G24345 cwc15,LOC107747811,LOC107597228,LOC107732607 other upstream 50723 37928355 ~ 37933989 (+)
LOC111194342 NA other upstream 270330 37589106 ~ 37714382 (+)
ar ar,LOC108443198 other upstream 1525783 36249824 ~ 36458929 (+)
LOC103040783 LOC108411309 other upstream 1887986 36043431 ~ 36096726 (+)
trdn NA other upstream 2682365 35226798 ~ 35302347 (+)
G24390 NA other downstream 104041 38092974 ~ 38098324 (+)
G24431 NA other downstream 243660 38232593 ~ 38237041 (+)
G24463 NA other downstream 370402 38359335 ~ 38382310 (+)
LOC111191729 LOC108416192 other downstream 370527 38359460 ~ 38379336 (+)
G24534 NA other downstream 596506 38585439 ~ 38586278 (+)

Expression


Co-expression Network