Gene
RNA
| Item | Value |
|---|---|
| gene id | derl2 |
| gene name | derl2,LOC106567674 |
| gene type | coding |
| species | mexican tetra (Astyanax mexicanus) |
| category of species | ornamental fish |
| Item | Value |
|---|---|
| chromosome id | NC_035899.1 |
| NCBI id | CM008302.1 |
| chromosome length | 74127438 |
| location | 2563803 ~ 2569599 (+) |
| genome version | Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome |
| symbol | description |
|---|---|
| derl2 | Predicted to enable misfolded protein binding activity and ubiquitin-specific protease binding activity. Predicted to be involved in endoplasmic reticulum unfolded protein response and ubiquitin-dependent ERAD pathway. Predicted to be located in endoplasmic reticulum and membrane. Predicted to be integral component of membrane. Predicted to be part of Hrd1p ubiquitin ligase ERAD-L complex. Predicted to be integral component of endoplasmic reticulum membrane. Orthologous to human DERL2 (derlin 2). |
| description |
|---|
| PREDICTED: derlin-2 |
| id | description |
|---|---|
| K13989 | DERL2_3; Derlin-2/3 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_015604814.2 | True | 1220 | mRNA | 0.47 | 7 | 2563803 | 2569599 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| ccdc84 | ccdc84 | coding | upstream | 233262 | 2325547 ~ 2330541 (+) |
| LOC103045030 | foxr1 | coding | upstream | 238252 | 2320857 ~ 2325551 (+) |
| upk2 | NA | coding | upstream | 245436 | 2315209 ~ 2318367 (+) |
| pou2f3 | pou2f3,LOC107664296,LOC107691752,LOC107600771,LOC107556425,LOC107712933,LOC107744320 | coding | upstream | 249503 | 2298591 ~ 2314300 (+) |
| LOC103038019 | LOC108428643 | coding | upstream | 268303 | 2281756 ~ 2295500 (+) |
| LOC111191739 | NA | coding | downstream | 3852 | 2573451 ~ 2576652 (+) |
| rabep1 | rabep1,LOC107691762 | coding | downstream | 19980 | 2589579 ~ 2616863 (+) |
| LOC103041644 | LOC103041644,LOC108428528,LOC107709757 | coding | downstream | 72998 | 2642597 ~ 2685350 (+) |
| prkrip1 | prkrip1,LOC106567678,LOC107600793 | coding | downstream | 134715 | 2704314 ~ 2707975 (+) |
| LOC103040935 | LOC103040935 | coding | downstream | 142772 | 2712371 ~ 2719413 (+) |
| G15995 | NA | non-coding | upstream | 230547 | 2330822 ~ 2333256 (+) |
| G15963 | NA | non-coding | upstream | 378727 | 2184854 ~ 2185076 (+) |
| G15947 | NA | non-coding | upstream | 433523 | 2129879 ~ 2130280 (+) |
| G15940 | NA | non-coding | upstream | 461254 | 2102272 ~ 2102549 (+) |
| G15932 | NA | non-coding | upstream | 489965 | 2073539 ~ 2073838 (+) |
| G16113 | NA | non-coding | downstream | 117698 | 2687297 ~ 2688041 (+) |
| G16141 | NA | non-coding | downstream | 337329 | 2906928 ~ 2907676 (+) |
| G16204 | NA | non-coding | downstream | 445823 | 3015422 ~ 3016421 (+) |
| G16230 | NA | non-coding | downstream | 620813 | 3190412 ~ 3191314 (+) |
| G16229 | NA | non-coding | downstream | 621961 | 3191560 ~ 3201320 (+) |
| nrgn | NA | other | upstream | 392596 | 2150630 ~ 2171207 (+) |
| G15839 | NA | other | upstream | 881781 | 1681159 ~ 1682022 (+) |
| fdxacb1 | fdxacb1 | other | upstream | 1034386 | 1516497 ~ 1529417 (+) |
| LOC103025578 | NA | other | upstream | 1223003 | 1322516 ~ 1340800 (+) |
| LOC103031762 | gnb2,LOC108428986,LOC107663406,LOC105023919 | other | upstream | 2442622 | 70784 ~ 121181 (+) |
| LOC103038305 | NA | other | downstream | 1946398 | 4515997 ~ 4517309 (+) |
| LOC103025913 | NA | other | downstream | 3599161 | 6168760 ~ 6177884 (+) |
| G16820 | NA | other | downstream | 3962797 | 6532396 ~ 6532868 (+) |
| LOC103032995 | NA | other | downstream | 4852972 | 7422571 ~ 7429391 (+) |
| LOC103041197 | NA | other | downstream | 5599240 | 8168839 ~ 8184837 (+) |
