opn5 (opn5)


Basic Information

Item Value
gene id opn5
gene name opn5
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 73219526 ~ 73247185 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_015604828.2
CTGTGGTCAGGGTGctgcagggcagacagacagttGTAAGAGCTCtcactctgagagagagagagagagagagagagagagagagagagcggagtCTGGATTATGGAGAAGTTAACAGCTCCACTCTGAGGAGACGCTGAACGCTGAGACCTGCGGCACAGTTCACCCACAGAGAGCGGGGGGCGATGCTCCTACACTCCTAGACAAGAAGCAGACTCCAGAGCCCCTATGGAGAACGAAACTTCAGTGCACACAGGCTACATTCCCCCTTATCTCCTCCGACAGGACCCTTTCGCCTCCAAGCTGTCCAAAGGGGGCGACATAGTGGCAGCCTTGTACATCCTCCTCATTGGGATCCTCTCAGCTATAGGAAATGGTTATGTTATCTACATGGCCATCAGAAGAAAGACAAAGTTAAAACCACCTGAAATAATGACTCTGAATTTAGCCATATTCGACTTCGGCATCTCAGTCACTGGGAAGCCATTTTTTGTAGTTTCGAGTTTTGCCCACCGCTGGCTGTTCGGCTGGGAGGGCTGTCGCTTCTACGGCTGGGCCGGCTTCTTCTTTGGCTGCGGCAGCCTCATCACCATGACTGTGGTCAGCTTTGAACGATATCTGAAAATCTGCCATTTAAGATACGGTACATGGATCAAGCGGCATCATGCCATGCTGAGCCTGCTCTTCATCTGGCTGTATGCAGCCTTCTGGGCCACTATGCCGCTGGTGGGCTGGGGCAGCTACGCCCCGGAACCGTTCGGCACCTCCTGCACACTGAACTGGTGGCTGGCCCAGGCCTCTGTAGCAGGACAAAGCTTCGTCATGTCCATCCTCTTCTTCTGCCTCGTCCTGCCCACGGTCGTCATCGTCTTCTCCTACGTCAGAATCATCATCAAGGTGAAGGCATCCGCTAAGGAAGTGTCCTGCTACGATGCCCGGAACAAGAACAACCACCTCCTGGAGATAAAGTTAACTAAGGTGGCAATGTTGATCTGTGCTGGATTTTTAATAGCGTGGATTCCGTATGCAGTGGTGTCAGTGATCTCTGCATTTGGGGTGCATGATTCAGTGCCTATTCCAGCTTCAGTCATACCAACTTTACTGGCCAAATCCTCCGCCATGTACAATCCCATCATATACCAGGTCATCGACTGCAAGAACAGCTGCTCTAAATCCTGCTGCTTTAAAGTCTTGAGCAAAAAGAAACAGTATAAATCTCCAAGGTTTTATTCTATCTCGGCATCCATCAAAGAGAGACCAGCAACAGAACCGCAAATTGAGATGTGAAAACGTCTGATAAAGTCAGATTTTACACTGGACATTTTTTCTCCTACATTAGTGTCATCCTCCCCATCAGACACCACGGACTGATCCATGACTGAATTAGCCTGCACTGTTTCTGCTGACGTTCCATTGCCTCTGGAATACTTAGTGTTATACATGTATTTGCAGACAGATGCTGTGATAAAgatatgtgtatttttatattttgtacagGTACTACATATATAACAGTCATATTCTGTGTGCATCTGCACTGTTTAAAGTGCATTGAACTTTACAGTGTGGTGATTCATAGCACAATACACTATATAAATATCAGCAGTATGTTTAAATGGAGAAAGCAGTACTTTGCATCAGTTGTGTTAAGCAAATACCAATCTTGCAGATTGTTCTAGTTAACAGTCTGTAATTTAAATCTAAGTTTACATTACTTGAGATGGACACAAGCGCTGGGTACTACACATACACTGCCATGTCTACACAAGTCTGTACAGTaatgtgtgttaaaaaaagaatattaagaGTAATATTTTTCTCAAAGCGATAAAACACTATgcactaaataaaacattgttaccttgtatttaaacatttctggCACATCAGTTTTGTTAAGGGTAATGTGCAATTGTTGTTTTAAAGGGATAATTcatcaatataataatattatattgtgcAACATATTTCATGCCTTTTTCTAGTGTTGTCTGTTATTTTGGCTACTACAGATTTATATTGAAACTGTAAGCCTAAATGTGTGAATAATGAGatgaaattattattagataATAGATTACTGTTCAGTTACCACGTCTGTACTGCTGTACATCACAGTAAGTGAGTGTACTGTAATTGTCCTGTACTCACTCAGCTTCAACGTCTTCATCCATTTATGTTCCCTCTTTCCTTATTCTTACTGCGTTGtccctgttctttatatttgGATCATCTGGACCAGATGTTTAATTAAAGCTTATTAAATAGAAGGAGTTAAACAAATTATGCCAGTGATTCTCCTCTGTGCTGATCTTGGTTTACCACTTCAGTACCATTTCAAGCCTgttatgtgcgtgtgtgtgaacCAGGGCTCATGGAATTGAGTGGCaatgaaaacactttttaacatgCTAAATGTTAAATGCTACTGGTGGGTAAACCCAAAAAAGTGACCCAATGGATTATAAGGATTTGAAGTCAAAATATGCAACGTAAATCAAGATCATTgatttaaatgacatttttaaaaaaggtgatttgaa

Function

symbol description
opn5 Enables 11-cis retinal binding activity and all-trans retinal binding activity. Acts upstream of or within absorption of visible light. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Is expressed in several structures, including gill; heart; integument; nervous system; and testis. Orthologous to human OPN5 (opsin 5).

NR:

description
PREDICTED: opsin-5-like

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0007601 visual perception biological_process
GO:0018298 protein-chromophore linkage biological_process
GO:0016021 integral component of membrane cellular_component
GO:0009881 photoreceptor activity molecular_function
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG:

id description
K08385 OPN5; G0-opsin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_015604828.2 True 2543 mRNA 0.43 7 73219526 73247185

Neighbor

gene id symbol gene type direction distance location
LOC103025777 mep1a coding upstream 371712 72833413 ~ 72847814 (+)
LOC103025272 LOC108440976 coding upstream 387911 72823559 ~ 72831615 (+)
LOC103024428 LOC103024428,LOC108440977 coding upstream 397249 72815642 ~ 72822277 (+)
tdrd6 NA coding upstream 415737 72786996 ~ 72803789 (+)
LOC103023468 vsnl1a,LOC103023468,LOC103379314,LOC107378186,LOC102798040,LOC104929407,LOC107553484 coding upstream 442469 72743018 ~ 72777057 (+)
LOC103034574 ptgs2b,LOC108442416,LOC107732418,LOC107698381,LOC107553505,LOC107726413,LOC107696154,LOC107599092 coding downstream 567785 73814970 ~ 73820823 (+)
pdc pdcb,pdc,LOC108442415,LOC106560557,LOC108257608,LOC107553454 coding downstream 632481 73879666 ~ 73884428 (+)
LOC103035930 tpr coding downstream 660677 73907862 ~ 73931368 (+)
scyl3 scyl3,LOC104956565 coding downstream 698893 73946078 ~ 73954704 (+)
sell NA coding downstream 752398 73999583 ~ 74004379 (+)
G32778 NA non-coding upstream 139952 73047002 ~ 73079574 (+)
G32806 NA non-coding upstream 156861 73061705 ~ 73062665 (+)
G32793 NA non-coding upstream 234663 72981012 ~ 72984863 (+)
G32787 NA non-coding upstream 274062 72944814 ~ 72945464 (+)
LOC111191374 NA non-coding upstream 341796 72877044 ~ 72877730 (+)
G32885 NA non-coding downstream 15130 73262315 ~ 73264493 (+)
G32886 NA non-coding downstream 17815 73265000 ~ 73265399 (+)
G32905 NA non-coding downstream 101012 73348197 ~ 73348620 (+)
G32939 NA non-coding downstream 294547 73541732 ~ 73541987 (+)
G32949 NA non-coding downstream 323808 73570993 ~ 73571378 (+)
cd2ap cd2ap other upstream 23306 73144650 ~ 73196220 (+)
sf3b6 SF3B6,sf3b6,pm14 other upstream 433163 72781793 ~ 72786363 (+)
G32641 NA other upstream 622589 72595906 ~ 72596937 (+)
usp24 usp24 other upstream 722462 72403534 ~ 72497064 (+)
dab1 dab1,LOC107581465 other upstream 1239163 71463100 ~ 71980363 (+)
LOC103030552 cnih3,LOC107601529,LOC107732540,LOC106607867,LOC107095392,LOC106527994,LOC108248696,LOC108440801,LOC106571455 other downstream 191871 73439056 ~ 73506987 (+)
selp NA other downstream 741316 73988501 ~ 74016347 (+)

Expression


Co-expression Network