LOC103024428 (LOC103024428,LOC108440977)


Basic Information

Item Value
gene id LOC103024428
gene name LOC103024428,LOC108440977
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 72815642 ~ 72822277 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_015604831.2
GCAAAATACCTACTGCTTCACACTCAGGATGTACTTGCTGGAACTACTTTTCTTTAGTGGACTGGCTGCTGGGGCAGTCTGCCATGCACTTCCAGTATCAGGTCGAGTGCATGAAGTTGAAGATGAGCCTAATGAGAATCCTTTCAGTAATCTGGGAGCACAAGCCCGCTTGATTGAAGGAGATATCCTCCTTCCTCCTGGACGAAATGCTCTGATCAATGAGGTTTATAGGTGGACATTCCCTATCCCTTACATTCTGTCTGACAGCCTTGagCTGAATGCAAAAGGAACAGTCTTTCAAGCTTTTGAAATGTATCGGCTGAAGTCCTGTATTGATTTTAAACCTTATGAAGGGGAGAAGTCATTCATCAAGTTTGAGAAACAAGGCGGGTGCTTTTCCAGTGTGGGGAAACAACCCAGTGGACAGGTACTATCTTTGGGCACCCGCTGTGACCATAAGGCTATTGTTGAGCATGAATTACTGCATGCACTGGGCTTTTACCACATGCAGTCACGTCAGGATCGAGATGACTATGTGAAGATCTGGTTGGATCAAGTCACTGACGGCCTGCAGCACAACTTCAACAAATATGACGACAGCTTTGTCACTGATATGAACACACCATACGACTATGAGTCAGTCATGCACTACAGGCCATTCTCTTTCAACAAAGACCCCGACAtccccaccatcaccaccaacaTCCCAGAGTTCTACAACATCATCGGGCAGTATCTAGACTTCAGCGAACAGGACGTTGTGAGactgaataaaatgtataaCTGCAGTTCCACTCTAACCTTGCTGGATCAGTGCACTTTCGAATACATCAATATATGCGGCATGATCCAGAGTCCCACGGATGATGAAGACTGGGTTCACACCAAGAGCACCCCTGGCTCTGAAGACCACACTCTTATAGGACAGTGTAGGGATGCAGGATACACAATGCACTTTGATACTGCGCTTGGAACAGCAGGGGGGTCTGCCATGCTGGAGTCCAGGCTACTTTACCCTAAAAGAAAGCTCCAGTGCCTTCAGTTCTTTTACAAAATGACTGGCAGCTCAATGGACAGGCTGGTCATCTGGGTCAAGATGGATGATGGAACAGGGACAGTGCGCAAGCTGAAGAAAGTGCACACAATTTGGGGTGACGATGATAAAGGCTGGAAAATTGCTCACGTGCCTATGGATGTTGGAGTGAAATTTCGTTATGCGTTTCAGGGGGTGAAGGGGGACCCTAGTAATTCCAATGGGGGTATGTTCATAGATGACATCAGTCTGGTTGAGACACGCTGCCCCTCTGCTGTCTGGCGCATCCAGAATTTCTCTCAGATCATGGCGGAAGCTGATCATAACACTTTCTTGGACAGCCCACCCTTCTACAGCCCTGAAGGTTACGCCTTTGGCATCCGCGTGTACCCTCTTGCAAACTACACTGACTACACAGGCAACTACACCGGCCTCTACTTCCATCTGGCCAGCGGAGAGAATGACATGGTCATGCAGTGGCCTGCTGTGGACCGCCAGGCCACTTTAGTAGTAATGGACCAGGATCCAGACATCAAACTGAGGATGTCCTCCGCTCGAAGTCTCACCACAGACCTGTCAACAACTCCTGAAGACAAATTGTATTGGGACAATCCAGCAAAGGTTGGAACCTACGACTCTGCCTGCCAGTGCTACAGAGGTGAATCAATGGGATGGAGAAATTTCATCAAACACTTTGATCTACGCAGACGTAATTACCTAAAAAATGATGACCTCATAATCTTTGCTGATTTTGAAGacttaACGCCCTTGAAGAATAGTGAAGTCCCTATTGTAACAGAGGAATAAAACTATGAAGAGTGTTTATCCTCGACCAGTCGCCAGTCCTGAAGAGCTGAAGAGTTGatgagatccagcagaagctgCAGTGAAATTACAT

Function

NR:

description
meprin A subunit alpha-like

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0016020 membrane cellular_component
GO:0004222 metalloendopeptidase activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_015604831.2 True 1931 mRNA 0.47 14 72815642 72822277

Neighbor

gene id symbol gene type direction distance location
tdrd6 NA coding upstream 11853 72786996 ~ 72803789 (+)
LOC103023468 vsnl1a,LOC103023468,LOC103379314,LOC107378186,LOC102798040,LOC104929407,LOC107553484 coding upstream 38585 72743018 ~ 72777057 (+)
LOC111191362 LOC108416099,LOC107559745,LOC107712833,LOC108248366 coding upstream 136559 72654819 ~ 72679083 (+)
sirt5 sirt5,LOC107687181,LOC107712885,LOC107581456 coding upstream 179394 72627240 ~ 72636248 (+)
LOC103033168 si:ch211-121a2.4,LOC103033168,LOC108416079,LOC107581514,LOC108257924,LOC107687197,LOC107712847 coding upstream 205460 72604213 ~ 72610182 (+)
LOC103025272 LOC108440976 coding downstream 1282 72823559 ~ 72831615 (+)
LOC103025777 mep1a coding downstream 11136 72833413 ~ 72847814 (+)
opn5 opn5 coding downstream 397249 73219526 ~ 73247185 (+)
LOC103034574 ptgs2b,LOC108442416,LOC107732418,LOC107698381,LOC107553505,LOC107726413,LOC107696154,LOC107599092 coding downstream 992693 73814970 ~ 73820823 (+)
pdc pdcb,pdc,LOC108442415,LOC106560557,LOC108257608,LOC107553454 coding downstream 1057389 73879666 ~ 73884428 (+)
G32716 NA non-coding upstream 113836 72701522 ~ 72701806 (+)
G32713 NA non-coding upstream 117877 72697449 ~ 72697765 (+)
G32644 NA non-coding upstream 188957 72626396 ~ 72626685 (+)
G32630 NA non-coding upstream 219964 72565009 ~ 72595678 (+)
G32579 NA non-coding upstream 452301 72362951 ~ 72363341 (+)
G32769 NA non-coding downstream 19574 72841851 ~ 72844396 (+)
LOC111191374 NA non-coding downstream 54767 72877044 ~ 72877730 (+)
G32787 NA non-coding downstream 122537 72944814 ~ 72945464 (+)
G32793 NA non-coding downstream 158735 72981012 ~ 72984863 (+)
G32778 NA non-coding downstream 224725 73047002 ~ 73079574 (+)
sf3b6 SF3B6,sf3b6,pm14 other upstream 29279 72781793 ~ 72786363 (+)
G32641 NA other upstream 218705 72595906 ~ 72596937 (+)
usp24 usp24 other upstream 318578 72403534 ~ 72497064 (+)
dab1 dab1,LOC107581465 other upstream 835279 71463100 ~ 71980363 (+)
G32229 NA other upstream 1646086 71167524 ~ 71169556 (+)
cd2ap cd2ap other downstream 322373 73144650 ~ 73196220 (+)
LOC103030552 cnih3,LOC107601529,LOC107732540,LOC106607867,LOC107095392,LOC106527994,LOC108248696,LOC108440801,LOC106571455 other downstream 616779 73439056 ~ 73506987 (+)
selp NA other downstream 1166224 73988501 ~ 74016347 (+)

Expression


Co-expression Network